RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 EIF4EBP3O60516 100 aaPredicted RBP12.44□□□□□ -0.42
PTPRE-201ENST00000254667 IGFL1Q6UW32 110 aa12.44□□□□□ -0.42
PTPRE-201ENST00000254667 K7EQZ3 153 aa12.44□□□□□ -0.42
PTPRE-201ENST00000254667 SPAG11AQ6PDA7 123 aa12.42□□□□□ -0.42
PTPRE-201ENST00000254667 FLNBO75369 2602 aaKnown RBP12.4□□□□□ -0.42
PTPRE-201ENST00000254667 GOLGB1Q14789 3259 aaKnown RBP12.39□□□□□ -0.43
PTPRE-201ENST00000254667 Q8N377 158 aa12.39□□□□□ -0.43
PTPRE-201ENST00000254667 APLNQ9ULZ1 77 aa12.39□□□□□ -0.43
PTPRE-201ENST00000254667 CNBPP62633 177 aaKnown RBP12.38□□□□□ -0.43
PTPRE-201ENST00000254667 HECTD1Q9ULT8 2610 aa12.38□□□□□ -0.43
PTPRE-201ENST00000254667 PRR15Q8IV56 129 aa12.36□□□□□ -0.43
PTPRE-201ENST00000254667 LINC00304Q8N9R0 145 aa12.36□□□□□ -0.43
PTPRE-201ENST00000254667 J3QL48 77 aa12.35□□□□□ -0.43
PTPRE-201ENST00000254667 LINC00336Q6ZUF6 198 aa12.35□□□□□ -0.43
PTPRE-201ENST00000254667 PRO0628Q9UI54 55 aa12.35□□□□□ -0.43
PTPRE-201ENST00000254667 C8orf17Q9NRJ1 99 aa12.35□□□□□ -0.43
PTPRE-201ENST00000254667 ZNF575Q86XF7 245 aa12.33□□□□□ -0.44
PTPRE-201ENST00000254667 A0A1B0GVX0 72 aa12.31□□□□□ -0.44
PTPRE-201ENST00000254667 IGLV7-43P04211 117 aa12.3□□□□□ -0.44
PTPRE-201ENST00000254667 A0A1W2PNN7 141 aa12.27□□□□□ -0.44
PTPRE-201ENST00000254667 DSCR10P59022 87 aa12.26□□□□□ -0.45
PTPRE-201ENST00000254667 IGLV5-37A0A075B6J1 123 aa12.26□□□□□ -0.45
PTPRE-201ENST00000254667 PSORS1C2Q9UIG4 136 aa12.25□□□□□ -0.45
PTPRE-201ENST00000254667 SPRR4Q96PI1 79 aa12.24□□□□□ -0.45
PTPRE-201ENST00000254667 CASC10Q5T4H9 136 aa12.24□□□□□ -0.45
PTPRE-201ENST00000254667 COA5Q86WW8 74 aa12.22□□□□□ -0.45
PTPRE-201ENST00000254667 MGAM2Q2M2H8 2515 aa12.21□□□□□ -0.45
PTPRE-201ENST00000254667 KLKP1Q107X0 134 aa12.2□□□□□ -0.46
PTPRE-201ENST00000254667 C4orf26Q17RF5 130 aa12.2□□□□□ -0.46
PTPRE-201ENST00000254667 PRRC2CQ9Y520 2896 aaKnown RBP12.19□□□□□ -0.46
PTPRE-201ENST00000254667 WIPF1O43516 503 aa12.19□□□□□ -0.46
PTPRE-201ENST00000254667 OBSCN-AS1Q96MR7 158 aa12.19□□□□□ -0.46
PTPRE-201ENST00000254667 USP24Q9UPU5 2620 aa12.16□□□□□ -0.46
PTPRE-201ENST00000254667 SMR3BP02814 79 aaPredicted RBP12.16□□□□□ -0.46
PTPRE-201ENST00000254667 CYP4F30PQ9H0H9 118 aa12.16□□□□□ -0.46
PTPRE-201ENST00000254667 A0A1W2PNM2 257 aa12.14□□□□□ -0.47
PTPRE-201ENST00000254667 IGLV5-48A0A075B6I7 105 aa12.13□□□□□ -0.47
PTPRE-201ENST00000254667 A0A0G2JQZ4 141 aa12.13□□□□□ -0.47
PTPRE-201ENST00000254667 LINC01600Q96MT4 127 aa12.13□□□□□ -0.47
PTPRE-201ENST00000254667 ANAPC11Q9NYG5 84 aa12.13□□□□□ -0.47
PTPRE-201ENST00000254667 IGLV8-61A0A075B6I0 122 aa12.13□□□□□ -0.47
PTPRE-201ENST00000254667 FLNAP21333 2647 aaKnown RBP12.11□□□□□ -0.47
PTPRE-201ENST00000254667 COX6B2Q6YFQ2 88 aa12.11□□□□□ -0.47
PTPRE-201ENST00000254667 C9orf92A6NGG3 77 aa12.1□□□□□ -0.47
PTPRE-201ENST00000254667 DNAH12Q6ZR08 3092 aa12.1□□□□□ -0.47
PTPRE-201ENST00000254667 UQCR11O14957 56 aa12.09□□□□□ -0.47
PTPRE-201ENST00000254667 A8MUN3 132 aa12.04□□□□□ -0.48
PTPRE-201ENST00000254667 ITPR3Q14573 2671 aa12.04□□□□□ -0.48
PTPRE-201ENST00000254667 CD164Q04900 197 aa12.04□□□□□ -0.48
PTPRE-201ENST00000254667 HELZ2Q9BYK8 2649 aaKnown RBP12.04□□□□□ -0.48
PTPRE-201ENST00000254667 TNP2Q05952 138 aa12.01□□□□□ -0.49
PTPRE-201ENST00000254667 H7BZZ5 65 aa12□□□□□ -0.49
PTPRE-201ENST00000254667 FAM104AQ969W3 186 aa11.99□□□□□ -0.49
PTPRE-201ENST00000254667 SPANXA2-OT1Q8N9U9 137 aa11.98□□□□□ -0.49
PTPRE-201ENST00000254667 RBM12B-AS1Q9P1G2 102 aa11.98□□□□□ -0.49
PTPRE-201ENST00000254667 ATRQ13535 2644 aa11.94□□□□□ -0.5
PTPRE-201ENST00000254667 MIR22HGQ0VDD5 57 aa11.93□□□□□ -0.5
PTPRE-201ENST00000254667 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.91□□□□□ -0.5
PTPRE-201ENST00000254667 FAM229BQ4G0N7 80 aa11.9□□□□□ -0.5
PTPRE-201ENST00000254667 BPTFQ12830 3046 aa11.88□□□□□ -0.51
PTPRE-201ENST00000254667 MAST4O15021 2626 aa11.88□□□□□ -0.51
PTPRE-201ENST00000254667 CHD7Q9P2D1 2997 aa11.88□□□□□ -0.51
PTPRE-201ENST00000254667 PLAC8Q9NZF1 115 aa11.86□□□□□ -0.51
PTPRE-201ENST00000254667 CFAP46Q8IYW2 2715 aa11.84□□□□□ -0.51
PTPRE-201ENST00000254667 CR1P17927 2039 aa11.83□□□□□ -0.51
PTPRE-201ENST00000254667 UTRNP46939 3433 aa11.83□□□□□ -0.51
PTPRE-201ENST00000254667 CEP350Q5VT06 3117 aa11.83□□□□□ -0.52
PTPRE-201ENST00000254667 OCR1Q9BZK8 76 aa11.82□□□□□ -0.52
PTPRE-201ENST00000254667 SPRR1AP35321 89 aa11.82□□□□□ -0.52
PTPRE-201ENST00000254667 CRIPTQ9P021 101 aa11.8□□□□□ -0.52
PTPRE-201ENST00000254667 SPINT4Q6UDR6 99 aa11.79□□□□□ -0.52
PTPRE-201ENST00000254667 Q8N1X5 172 aa11.78□□□□□ -0.52
PTPRE-201ENST00000254667 PRR26Q8N8Z3 221 aa11.77□□□□□ -0.53
PTPRE-201ENST00000254667 CHD9Q3L8U1 2897 aa11.76□□□□□ -0.53
PTPRE-201ENST00000254667 IGLV7-46A0A075B6I9 117 aa11.74□□□□□ -0.53
PTPRE-201ENST00000254667 Q6ZSA8 131 aa11.73□□□□□ -0.53
PTPRE-201ENST00000254667 SPRR1BP22528 89 aa11.72□□□□□ -0.53
PTPRE-201ENST00000254667 Q8NDZ9 215 aa11.68□□□□□ -0.54
PTPRE-201ENST00000254667 CENPEQ02224 2701 aa11.64□□□□□ -0.55
PTPRE-201ENST00000254667 MMP24-AS1A0A0U1RRL7 71 aa11.64□□□□□ -0.55
PTPRE-201ENST00000254667 CDC42SE1Q9NRR8 79 aa11.62□□□□□ -0.55
PTPRE-201ENST00000254667 KRTAP26-1Q6PEX3 210 aa11.62□□□□□ -0.55
PTPRE-201ENST00000254667 ZNF292O60281 2723 aa11.61□□□□□ -0.55
PTPRE-201ENST00000254667 HRES1P13985 223 aa11.61□□□□□ -0.55
PTPRE-201ENST00000254667 KRTAP1-5Q9BYS1 174 aa11.6□□□□□ -0.55
PTPRE-201ENST00000254667 LINC01554Q52M75 96 aa11.59□□□□□ -0.55
PTPRE-201ENST00000254667 ZCCHC13Q8WW36 166 aaKnown RBP11.59□□□□□ -0.55
PTPRE-201ENST00000254667 Q1T7F1 81 aa11.58□□□□□ -0.56
PTPRE-201ENST00000254667 C5orf42Q9H799 3197 aa11.58□□□□□ -0.56
PTPRE-201ENST00000254667 A0A0D9SG42 100 aa11.57□□□□□ -0.56
PTPRE-201ENST00000254667 HTTP42858 3142 aa11.55□□□□□ -0.56
PTPRE-201ENST00000254667 LINC00472Q9H8W2 130 aa11.55□□□□□ -0.56
PTPRE-201ENST00000254667 KTN1-AS1Q86SY8 53 aa11.54□□□□□ -0.56
PTPRE-201ENST00000254667 TRANK1O15050 2925 aa11.52□□□□□ -0.56
PTPRE-201ENST00000254667 STAB1Q9NY15 2570 aa11.52□□□□□ -0.57
PTPRE-201ENST00000254667 LCE6AA0A183 80 aa11.5□□□□□ -0.57
PTPRE-201ENST00000254667 A0A1B0GU33 70 aa11.47□□□□□ -0.57
PTPRE-201ENST00000254667 LCA10Q71F78 164 aa11.47□□□□□ -0.57
PTPRE-201ENST00000254667 Q8N9P0 234 aaPredicted RBP11.44□□□□□ -0.58
PTPRE-201ENST00000254667 Q5W150 140 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms