RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TRAV12-1A0A0B4J245 112 aa9.48□□□□□ -0.89
CLN3-264ENST00000637985 RPL24P83731 157 aaKnown RBP9.48□□□□□ -0.89
CLN3-264ENST00000637985 VPREB1P12018 145 aa9.47□□□□□ -0.89
CLN3-264ENST00000637985 KRTAP13-1Q8IUC0 172 aa9.47□□□□□ -0.89
CLN3-264ENST00000637985 IFI27L1Q96BM0 104 aa9.47□□□□□ -0.89
CLN3-264ENST00000637985 IGLV7-46A0A075B6I9 117 aa9.46□□□□□ -0.9
CLN3-264ENST00000637985 IGKV2-28A0A075B6P5 120 aa9.46□□□□□ -0.9
CLN3-264ENST00000637985 IGKV2D-28P01615 120 aa9.46□□□□□ -0.9
CLN3-264ENST00000637985 CRYGAP11844 174 aa9.46□□□□□ -0.9
CLN3-264ENST00000637985 UBE2AP49459 152 aa9.46□□□□□ -0.9
CLN3-264ENST00000637985 TYMSOSQ8TAI1 123 aa9.46□□□□□ -0.9
CLN3-264ENST00000637985 ZNF625Q96I27 306 aaPredicted RBP9.46□□□□□ -0.9
CLN3-264ENST00000637985 TMEM223A0PJW6 202 aa9.44□□□□□ -0.9
CLN3-264ENST00000637985 SCO1O75880 301 aa9.44□□□□□ -0.9
CLN3-264ENST00000637985 HSBP1O75506 76 aa9.41□□□□□ -0.9
CLN3-264ENST00000637985 LINC00158P58513 81 aa9.41□□□□□ -0.9
CLN3-264ENST00000637985 KRTAP4-1Q9BYQ7 146 aa9.41□□□□□ -0.9
CLN3-264ENST00000637985 TMEM126AQ9H061 195 aa9.41□□□□□ -0.9
CLN3-264ENST00000637985 FAM229BQ4G0N7 80 aa9.4□□□□□ -0.9
CLN3-264ENST00000637985 CBLN2Q8IUK8 224 aa9.4□□□□□ -0.9
CLN3-264ENST00000637985 TMEM238C9JI98 176 aa9.39□□□□□ -0.91
CLN3-264ENST00000637985 FAM19A1Q7Z5A9 133 aa9.39□□□□□ -0.91
CLN3-264ENST00000637985 Q8NDZ9 215 aa9.39□□□□□ -0.91
CLN3-264ENST00000637985 KRTAP9-7A8MTY7 169 aa9.38□□□□□ -0.91
CLN3-264ENST00000637985 M0R378 163 aa9.38□□□□□ -0.91
CLN3-264ENST00000637985 HERV-K104P63124 156 aa9.38□□□□□ -0.91
CLN3-264ENST00000637985 ASB16-AS1Q495Z4 193 aa9.38□□□□□ -0.91
CLN3-264ENST00000637985 FAM19A2Q8N3H0 131 aa9.38□□□□□ -0.91
CLN3-264ENST00000637985 LINC00587B1AMM8 73 aa9.37□□□□□ -0.91
CLN3-264ENST00000637985 ATP6V1G1O75348 118 aa9.37□□□□□ -0.91
CLN3-264ENST00000637985 TRGC2P03986 189 aa9.37□□□□□ -0.91
CLN3-264ENST00000637985 PRLHP81277 87 aa9.37□□□□□ -0.91
CLN3-264ENST00000637985 KRTAP13-2Q52LG2 175 aa9.37□□□□□ -0.91
CLN3-264ENST00000637985 PPDPFQ9H3Y8 114 aa9.37□□□□□ -0.91
CLN3-264ENST00000637985 ANAPC11Q9NYG5 84 aa9.37□□□□□ -0.91
CLN3-264ENST00000637985 A0A0U1RRA0 63 aa9.36□□□□□ -0.91
CLN3-264ENST00000637985 LINC00304Q8N9R0 145 aa9.36□□□□□ -0.91
CLN3-264ENST00000637985 LEPROTL1O95214 131 aa9.35□□□□□ -0.91
CLN3-264ENST00000637985 SMIM13P0DJ93 91 aa9.35□□□□□ -0.91
CLN3-264ENST00000637985 MEIG1Q5JSS6 88 aa9.35□□□□□ -0.91
CLN3-264ENST00000637985 NDUFA12Q9UI09 145 aa9.34□□□□□ -0.91
CLN3-264ENST00000637985 IGKV2D-26A0A0A0MRZ7 120 aa9.33□□□□□ -0.92
CLN3-264ENST00000637985 MYMXA0A1B0GTQ4 84 aa9.33□□□□□ -0.92
CLN3-264ENST00000637985 H0Y8G0 127 aa9.33□□□□□ -0.92
CLN3-264ENST00000637985 SERF1AO75920 110 aa9.33□□□□□ -0.92
CLN3-264ENST00000637985 LCE2CQ5TA81 110 aa9.33□□□□□ -0.92
CLN3-264ENST00000637985 MIR7-3HGQ8N6C7 128 aa9.33□□□□□ -0.92
CLN3-264ENST00000637985 PLEKHB2Q96CS7 222 aa9.33□□□□□ -0.92
CLN3-264ENST00000637985 CTAG1AP78358 180 aa9.32□□□□□ -0.92
CLN3-264ENST00000637985 BOD1L2Q8IYS8 172 aa9.32□□□□□ -0.92
CLN3-264ENST00000637985 MAP1LC3CQ9BXW4 147 aa9.32□□□□□ -0.92
CLN3-264ENST00000637985 PLNP26678 52 aa9.31□□□□□ -0.92
CLN3-264ENST00000637985 LINC00310P59036 64 aa9.31□□□□□ -0.92
CLN3-264ENST00000637985 HSPB8Q9UJY1 196 aa9.31□□□□□ -0.92
CLN3-264ENST00000637985 PRYO14603 147 aa9.3□□□□□ -0.92
CLN3-264ENST00000637985 LEPROTO15243 131 aa9.3□□□□□ -0.92
CLN3-264ENST00000637985 HIGD2AQ9BW72 106 aa9.3□□□□□ -0.92
CLN3-264ENST00000637985 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.29□□□□□ -0.92
CLN3-264ENST00000637985 KCNQ1DNQ9H478 68 aa9.29□□□□□ -0.92
CLN3-264ENST00000637985 COLCA2A8K830 154 aa9.28□□□□□ -0.92
CLN3-264ENST00000637985 SLC7A5P1Q8MH63 180 aa9.28□□□□□ -0.92
CLN3-264ENST00000637985 LINC00337Q8N6G1 96 aa9.28□□□□□ -0.92
CLN3-264ENST00000637985 LOC107984156A0A0G2JMH3 177 aa9.27□□□□□ -0.93
CLN3-264ENST00000637985 NCR3O14931 201 aa9.27□□□□□ -0.93
CLN3-264ENST00000637985 DPM2O94777 84 aa9.27□□□□□ -0.93
CLN3-264ENST00000637985 FABP4P15090 132 aa9.27□□□□□ -0.93
CLN3-264ENST00000637985 SPRR1AP35321 89 aa9.27□□□□□ -0.93
CLN3-264ENST00000637985 TSPEAR-AS2P59090 65 aa9.27□□□□□ -0.93
CLN3-264ENST00000637985 HERVK_113P61574 105 aa9.27□□□□□ -0.93
CLN3-264ENST00000637985 ARL17AQ8IVW1 177 aa9.27□□□□□ -0.93
CLN3-264ENST00000637985 ZNF706Q9Y5V0 76 aaPredicted RBP9.27□□□□□ -0.93
CLN3-264ENST00000637985 NMUP48645 174 aa9.26□□□□□ -0.93
CLN3-264ENST00000637985 SEC61BP60468 96 aaKnown RBP9.26□□□□□ -0.93
CLN3-264ENST00000637985 KRTAP13-3Q3SY46 172 aa9.26□□□□□ -0.93
CLN3-264ENST00000637985 SPRR4Q96PI1 79 aa9.26□□□□□ -0.93
CLN3-264ENST00000637985 J3QQQ9 107 aa9.25□□□□□ -0.93
CLN3-264ENST00000637985 IGKCP01834 107 aa9.25□□□□□ -0.93
CLN3-264ENST00000637985 CFC1BP0CG36 223 aa9.25□□□□□ -0.93
CLN3-264ENST00000637985 S100A12P80511 92 aa9.25□□□□□ -0.93
CLN3-264ENST00000637985 KRTAP4-16G5E9R7 235 aaPredicted RBP9.24□□□□□ -0.93
CLN3-264ENST00000637985 MT1HP80294 61 aa9.24□□□□□ -0.93
CLN3-264ENST00000637985 C3orf22Q8N5N4 141 aa9.24□□□□□ -0.93
CLN3-264ENST00000637985 TRBV10-3A0A0K0K1G6 114 aa9.23□□□□□ -0.93
CLN3-264ENST00000637985 ETDCA0A1B0GVM5 59 aa9.23□□□□□ -0.93
CLN3-264ENST00000637985 LGALS3P17931 250 aaKnown RBP9.23□□□□□ -0.93
CLN3-264ENST00000637985 FP248Q71RG6 208 aaPredicted RBP9.23□□□□□ -0.93
CLN3-264ENST00000637985 PMCHL2Q9BQD1 86 aa9.23□□□□□ -0.93
CLN3-264ENST00000637985 TRBV10-2A0A0K0K1G8 114 aa9.22□□□□□ -0.93
CLN3-264ENST00000637985 LORP23490 312 aaPredicted RBP9.22□□□□□ -0.93
CLN3-264ENST00000637985 KRTAP19-2Q3LHN2 52 aa9.22□□□□□ -0.93
CLN3-264ENST00000637985 SPAG11AQ6PDA7 123 aa9.22□□□□□ -0.93
CLN3-264ENST00000637985 DAND5Q8N907 189 aa9.22□□□□□ -0.93
CLN3-264ENST00000637985 SMCR5Q8TEV8 140 aa9.21□□□□□ -0.94
CLN3-264ENST00000637985 MIEN1Q9BRT3 115 aa9.21□□□□□ -0.94
CLN3-264ENST00000637985 DDTP30046 118 aa9.2□□□□□ -0.94
CLN3-264ENST00000637985 SPANXB1Q9NS25 103 aaPredicted RBP9.2□□□□□ -0.94
CLN3-264ENST00000637985 NDUFC2O95298 119 aa9.19□□□□□ -0.94
CLN3-264ENST00000637985 E9PLD3 99 aa9.18□□□□□ -0.94
CLN3-264ENST00000637985 B5MCH6 92 aa9.17□□□□□ -0.94
CLN3-264ENST00000637985 KRTAP10-6P60371 365 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms