RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 SLPIP03973 132 aa3.06□□□□□ -1.92
SCN1A-210ENST00000635776 C9orf116Q5BN46 136 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-210ENST00000635776 PRB2P02812 416 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-210ENST00000635776 KRTAP10-11P60412 298 aa3.05□□□□□ -1.92
SCN1A-210ENST00000635776 UBR5O95071 2799 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-210ENST00000635776 LINC00526Q96FQ7 95 aa3.05□□□□□ -1.92
SCN1A-210ENST00000635776 IGLV5-37A0A075B6J1 123 aa3.05□□□□□ -1.92
SCN1A-210ENST00000635776 B9D2Q9BPU9 175 aa3.05□□□□□ -1.92
SCN1A-210ENST00000635776 C10orf25Q5T742 122 aa3.05□□□□□ -1.92
SCN1A-210ENST00000635776 KCNQ1DNQ9H478 68 aa3.05□□□□□ -1.92
SCN1A-210ENST00000635776 NDUFC1O43677 76 aa3.05□□□□□ -1.92
SCN1A-210ENST00000635776 COL6A3P12111 3177 aa3.05□□□□□ -1.92
SCN1A-210ENST00000635776 DSPP15924 2871 aaKnown RBP3.05□□□□□ -1.92
SCN1A-210ENST00000635776 IGKV3D-7A0A0C4DH55 119 aa3.04□□□□□ -1.92
SCN1A-210ENST00000635776 BPY2O14599 106 aa3.04□□□□□ -1.92
SCN1A-210ENST00000635776 ZNF706Q9Y5V0 76 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-210ENST00000635776 MTORP42345 2549 aa3.04□□□□□ -1.92
SCN1A-210ENST00000635776 MRPL55Q7Z7F7 128 aaKnown RBP3.04□□□□□ -1.92
SCN1A-210ENST00000635776 LINC00846Q9NV44 126 aa3.04□□□□□ -1.92
SCN1A-210ENST00000635776 LINC00588Q9Y4M8 146 aa3.04□□□□□ -1.92
SCN1A-210ENST00000635776 CCDC179H3BU77 68 aa3.04□□□□□ -1.92
SCN1A-210ENST00000635776 LINC00528Q8N1L1 170 aa3.04□□□□□ -1.92
SCN1A-210ENST00000635776 FN1P02751 2386 aaKnown RBP3.04□□□□□ -1.92
SCN1A-210ENST00000635776 UNC79Q9P2D8 2635 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 CFAP46Q8IYW2 2715 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 TMEM258P61165 79 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 EYSQ5T1H1 3165 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 FLNAP21333 2647 aaKnown RBP3.03□□□□□ -1.92
SCN1A-210ENST00000635776 REG3GQ6UW15 175 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 ATP5EP56381 51 aaPredicted RBP3.03□□□□□ -1.92
SCN1A-210ENST00000635776 PRR3P79522 188 aaKnown RBP3.03□□□□□ -1.92
SCN1A-210ENST00000635776 Q6ZQT0 140 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 C7orf33Q8WU49 177 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 C15orf56Q8N910 161 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 USP34Q70CQ2 3546 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 UBE2AP49459 152 aa3.03□□□□□ -1.92
SCN1A-210ENST00000635776 Q6ZRX8 168 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 ITPR3Q14573 2671 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 FASNP49327 2511 aaKnown RBP3.02□□□□□ -1.93
SCN1A-210ENST00000635776 CRYGAP11844 174 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 TRAV7A0A075B6U4 112 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 CNBPP62633 177 aaKnown RBP3.02□□□□□ -1.93
SCN1A-210ENST00000635776 C16orf90A8MZG2 172 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 FRYLO94915 3013 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 Q6ZVQ6 151 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 FAM19A1Q7Z5A9 133 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 K7EIL1 84 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 FAM19A5Q7Z5A7 132 aaPredicted RBP3.02□□□□□ -1.93
SCN1A-210ENST00000635776 C22orf24Q9Y442 160 aa3.02□□□□□ -1.93
SCN1A-210ENST00000635776 TRBV7-4A0A0J9YYF1 115 aa3.01□□□□□ -1.93
SCN1A-210ENST00000635776 NDUFB1O75438 58 aa3.01□□□□□ -1.93
SCN1A-210ENST00000635776 DEFB105AQ8NG35 78 aa3.01□□□□□ -1.93
SCN1A-210ENST00000635776 IGLV1-50A0A075B6I6 118 aa3.01□□□□□ -1.93
SCN1A-210ENST00000635776 Q6ZRP5 223 aa3.01□□□□□ -1.93
SCN1A-210ENST00000635776 SPTSSBQ8NFR3 76 aa3.01□□□□□ -1.93
SCN1A-210ENST00000635776 Q8N3U1 123 aa3.01□□□□□ -1.93
SCN1A-210ENST00000635776 C1orf137Q5JT78 98 aa3.01□□□□□ -1.93
SCN1A-210ENST00000635776 DMXL2Q8TDJ6 3036 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 ADGRG4Q8IZF6 3080 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 ITPR1Q14643 2758 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 FREM2Q5SZK8 3169 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 CDK2AP2O75956 126 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 LINC01547P58512 204 aaPredicted RBP3□□□□□ -1.93
SCN1A-210ENST00000635776 KRTAP26-1Q6PEX3 210 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 DMXL1Q9Y485 3027 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 IGKV2-24A0A0C4DH68 120 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 MPLKIPQ8TAP9 179 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 FLNCQ14315 2725 aa3□□□□□ -1.93
SCN1A-210ENST00000635776 RPL37AP61513 92 aaKnown RBP2.99□□□□□ -1.93
SCN1A-210ENST00000635776 HIGD2AQ9BW72 106 aa2.99□□□□□ -1.93
SCN1A-210ENST00000635776 HRNRQ86YZ3 2850 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-210ENST00000635776 NBDYA0A0U1RRE5 68 aa2.99□□□□□ -1.93
SCN1A-210ENST00000635776 MP68P56378 58 aa2.99□□□□□ -1.93
SCN1A-210ENST00000635776 Q8NBF4 154 aa2.99□□□□□ -1.93
SCN1A-210ENST00000635776 IGLV5-48A0A075B6I7 105 aa2.99□□□□□ -1.93
SCN1A-210ENST00000635776 H0Y9J4 135 aa2.99□□□□□ -1.93
SCN1A-210ENST00000635776 ERC2-IT1O76042 136 aa2.99□□□□□ -1.93
SCN1A-210ENST00000635776 SPRR1AP35321 89 aa2.98□□□□□ -1.93
SCN1A-210ENST00000635776 C1orf195Q5TG92 126 aa2.98□□□□□ -1.93
SCN1A-210ENST00000635776 RPS28P62857 69 aaKnown RBP2.98□□□□□ -1.93
SCN1A-210ENST00000635776 ATMQ13315 3056 aa2.98□□□□□ -1.93
SCN1A-210ENST00000635776 APLNQ9ULZ1 77 aa2.98□□□□□ -1.93
SCN1A-210ENST00000635776 C9orf129Q5T035 196 aaKnown RBP2.98□□□□□ -1.93
SCN1A-210ENST00000635776 K7ERS5 55 aa2.98□□□□□ -1.93
SCN1A-210ENST00000635776 FRYQ5TBA9 3013 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 C9orf163Q8N9P6 203 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 SMCR5Q8TEV8 140 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 HELZ2Q9BYK8 2649 aaKnown RBP2.97□□□□□ -1.93
SCN1A-210ENST00000635776 HECTD1Q9ULT8 2610 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 SEC61GP60059 68 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 MDFIQ99750 246 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 JMJD1CQ15652 2540 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 HRCT1Q6UXD1 115 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 C20orf197Q8N268 126 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 BOD1L1Q8NFC6 3051 aa2.97□□□□□ -1.93
SCN1A-210ENST00000635776 FAM236DA0A1B0GTK5 79 aa2.96□□□□□ -1.93
SCN1A-210ENST00000635776 FAM236CP0DP71 79 aa2.96□□□□□ -1.93
SCN1A-210ENST00000635776 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-210ENST00000635776 SERTAD4-AS1Q5TG53 156 aa2.96□□□□□ -1.94
SCN1A-210ENST00000635776 A0A087WVE0 104 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 148.6 ms