RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 VAMP8Q9BV40 100 aa12.59□□□□□ -0.39
SHKBP1-222ENST00000600320 TP73-AS1Q9UF72 201 aa12.59□□□□□ -0.39
SHKBP1-222ENST00000600320 SPATA45Q537H7 98 aa12.58□□□□□ -0.4
SHKBP1-222ENST00000600320 SMR3BP02814 79 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-222ENST00000600320 HSPG2P98160 4391 aa12.57□□□□□ -0.4
SHKBP1-222ENST00000600320 TIMM17BO60830 172 aa12.56□□□□□ -0.4
SHKBP1-222ENST00000600320 Q8NDZ9 215 aa12.56□□□□□ -0.4
SHKBP1-222ENST00000600320 COX8AP10176 69 aa12.55□□□□□ -0.4
SHKBP1-222ENST00000600320 SCGB1D4Q6XE38 83 aa12.54□□□□□ -0.4
SHKBP1-222ENST00000600320 PHF5AQ7RTV0 110 aaKnown RBP12.54□□□□□ -0.4
SHKBP1-222ENST00000600320 PLA2G2DQ9UNK4 145 aa12.54□□□□□ -0.4
SHKBP1-222ENST00000600320 EIF4EBP3O60516 100 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-222ENST00000600320 SOSTDC1Q6X4U4 206 aa12.53□□□□□ -0.4
SHKBP1-222ENST00000600320 BOD1L2Q8IYS8 172 aa12.53□□□□□ -0.4
SHKBP1-222ENST00000600320 C14orf144Q96I85 54 aa12.53□□□□□ -0.4
SHKBP1-222ENST00000600320 M0QXV9 152 aa12.52□□□□□ -0.41
SHKBP1-222ENST00000600320 VPREB1P12018 145 aa12.52□□□□□ -0.41
SHKBP1-222ENST00000600320 NPC2P61916 151 aa12.52□□□□□ -0.41
SHKBP1-222ENST00000600320 C22orf24Q9Y442 160 aa12.51□□□□□ -0.41
SHKBP1-222ENST00000600320 IGLV5-37A0A075B6J1 123 aa12.5□□□□□ -0.41
SHKBP1-222ENST00000600320 LINC00528Q8N1L1 170 aa12.5□□□□□ -0.41
SHKBP1-222ENST00000600320 LOC107984156A0A0G2JMH3 177 aa12.49□□□□□ -0.41
SHKBP1-222ENST00000600320 ARL17AQ8IVW1 177 aa12.49□□□□□ -0.41
SHKBP1-222ENST00000600320 TMEM238C9JI98 176 aa12.48□□□□□ -0.41
SHKBP1-222ENST00000600320 DLEU1O43261 78 aa12.48□□□□□ -0.41
SHKBP1-222ENST00000600320 KRTAP11-1Q8IUC1 163 aa12.48□□□□□ -0.41
SHKBP1-222ENST00000600320 LINC00308Q8TCZ7 52 aa12.48□□□□□ -0.41
SHKBP1-222ENST00000600320 SPANXDQ9BXN6 97 aa12.48□□□□□ -0.41
SHKBP1-222ENST00000600320 SPANXCQ9NY87 97 aa12.48□□□□□ -0.41
SHKBP1-222ENST00000600320 FAT1Q14517 4588 aa12.46□□□□□ -0.41
SHKBP1-222ENST00000600320 PRR3P79522 188 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-222ENST00000600320 RPL24P83731 157 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-222ENST00000600320 SMIM6P0DI80 62 aa12.45□□□□□ -0.42
SHKBP1-222ENST00000600320 MRPL55Q7Z7F7 128 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-222ENST00000600320 Q8N1X5 172 aa12.45□□□□□ -0.42
SHKBP1-222ENST00000600320 C7orf33Q8WU49 177 aa12.45□□□□□ -0.42
SHKBP1-222ENST00000600320 MIEN1Q9BRT3 115 aa12.45□□□□□ -0.42
SHKBP1-222ENST00000600320 GAGE10A6NGK3 116 aa12.44□□□□□ -0.42
SHKBP1-222ENST00000600320 SLC25A34Q6PIV7 304 aa12.44□□□□□ -0.42
SHKBP1-222ENST00000600320 NKAPP1Q8N9T2 125 aa12.44□□□□□ -0.42
SHKBP1-222ENST00000600320 LINC00167Q96N53 147 aa12.44□□□□□ -0.42
SHKBP1-222ENST00000600320 S100A12P80511 92 aa12.43□□□□□ -0.42
SHKBP1-222ENST00000600320 SPANXB1Q9NS25 103 aaPredicted RBP12.43□□□□□ -0.42
SHKBP1-222ENST00000600320 NCR3O14931 201 aa12.42□□□□□ -0.42
SHKBP1-222ENST00000600320 LBHQ53QV2 105 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-222ENST00000600320 Q5VSD8 79 aa12.42□□□□□ -0.42
SHKBP1-222ENST00000600320 C2orf91Q6ZV80 131 aa12.42□□□□□ -0.42
SHKBP1-222ENST00000600320 UBE2BP63146 152 aa12.41□□□□□ -0.42
SHKBP1-222ENST00000600320 Q6ZVH6 145 aa12.41□□□□□ -0.42
SHKBP1-222ENST00000600320 MUSTN1Q8IVN3 82 aa12.41□□□□□ -0.42
SHKBP1-222ENST00000600320 RPL37AP8A6NKH3 93 aa12.4□□□□□ -0.42
SHKBP1-222ENST00000600320 KRTAP10-4P60372 401 aaPredicted RBP12.4□□□□□ -0.42
SHKBP1-222ENST00000600320 RPL37AP61513 92 aaKnown RBP12.4□□□□□ -0.42
SHKBP1-222ENST00000600320 FAM229AH3BQW9 127 aa12.39□□□□□ -0.43
SHKBP1-222ENST00000600320 M0R378 163 aa12.39□□□□□ -0.43
SHKBP1-222ENST00000600320 NDUFC2O95298 119 aa12.39□□□□□ -0.43
SHKBP1-222ENST00000600320 IFITM1P13164 125 aa12.39□□□□□ -0.43
SHKBP1-222ENST00000600320 SRSF9Q13242 221 aaKnown RBP eCLIP12.38□□□□□ -0.43
SHKBP1-222ENST00000600320 KRTAP4-5Q9BYR2 181 aa12.38□□□□□ -0.43
SHKBP1-222ENST00000600320 HIGD1BQ9P298 99 aa12.38□□□□□ -0.43
SHKBP1-222ENST00000600320 PSORS1C2Q9UIG4 136 aa12.38□□□□□ -0.43
SHKBP1-222ENST00000600320 ABCA13Q86UQ4 5058 aa12.37□□□□□ -0.43
SHKBP1-222ENST00000600320 PPDPFQ9H3Y8 114 aa12.37□□□□□ -0.43
SHKBP1-222ENST00000600320 IGLV1-50A0A075B6I6 118 aa12.35□□□□□ -0.43
SHKBP1-222ENST00000600320 IGKV2-28A0A075B6P5 120 aa12.35□□□□□ -0.43
SHKBP1-222ENST00000600320 IGKV2D-28P01615 120 aa12.35□□□□□ -0.43
SHKBP1-222ENST00000600320 PRO1933Q9H354 126 aa12.35□□□□□ -0.43
SHKBP1-222ENST00000600320 TRBV10-2A0A0K0K1G8 114 aa12.34□□□□□ -0.43
SHKBP1-222ENST00000600320 PLA2G1BP04054 148 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-222ENST00000600320 HIST1H4GQ99525 98 aa12.34□□□□□ -0.43
SHKBP1-222ENST00000600320 UQCR10Q9UDW1 63 aa12.34□□□□□ -0.43
SHKBP1-222ENST00000600320 TRBV10-3A0A0K0K1G6 114 aa12.33□□□□□ -0.44
SHKBP1-222ENST00000600320 COPS9Q8WXC6 57 aa12.33□□□□□ -0.44
SHKBP1-222ENST00000600320 C12orf57Q99622 126 aa12.33□□□□□ -0.44
SHKBP1-222ENST00000600320 C1orf137Q5JT78 98 aa12.32□□□□□ -0.44
SHKBP1-222ENST00000600320 HNRNPA3P51991 378 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-222ENST00000600320 A4D1N5 150 aa12.29□□□□□ -0.44
SHKBP1-222ENST00000600320 DDTP30046 118 aa12.29□□□□□ -0.44
SHKBP1-222ENST00000600320 LINC00337Q8N6G1 96 aa12.29□□□□□ -0.44
SHKBP1-222ENST00000600320 VPS13BQ7Z7G8 4022 aa12.28□□□□□ -0.44
SHKBP1-222ENST00000600320 IGLV6-57P01721 117 aa12.28□□□□□ -0.44
SHKBP1-222ENST00000600320 LINC00518Q8N0U6 118 aa12.28□□□□□ -0.44
SHKBP1-222ENST00000600320 TAL2Q16559 108 aa12.27□□□□□ -0.45
SHKBP1-222ENST00000600320 S100A7L2Q5SY68 101 aa12.27□□□□□ -0.45
SHKBP1-222ENST00000600320 TMEM126AQ9H061 195 aa12.27□□□□□ -0.45
SHKBP1-222ENST00000600320 REG3GQ6UW15 175 aa12.26□□□□□ -0.45
SHKBP1-222ENST00000600320 KCNQ1DNQ9H478 68 aa12.26□□□□□ -0.45
SHKBP1-222ENST00000600320 PRYO14603 147 aa12.25□□□□□ -0.45
SHKBP1-222ENST00000600320 BCE1O60756 84 aa12.25□□□□□ -0.45
SHKBP1-222ENST00000600320 IGLV7-43P04211 117 aa12.25□□□□□ -0.45
SHKBP1-222ENST00000600320 OR13C6PQ8NH95 151 aa12.25□□□□□ -0.45
SHKBP1-222ENST00000600320 CEND1Q8N111 149 aa12.24□□□□□ -0.45
SHKBP1-222ENST00000600320 SPRR1AP35321 89 aa12.23□□□□□ -0.45
SHKBP1-222ENST00000600320 HSD52Q0P140 79 aa12.23□□□□□ -0.45
SHKBP1-222ENST00000600320 TRAV23DV6A0A075B6W5 121 aa12.21□□□□□ -0.45
SHKBP1-222ENST00000600320 FXYD2P54710 66 aa12.21□□□□□ -0.45
SHKBP1-222ENST00000600320 A6NDN8 102 aa12.2□□□□□ -0.46
SHKBP1-222ENST00000600320 KRTAP4-16G5E9R7 235 aaPredicted RBP12.2□□□□□ -0.46
SHKBP1-222ENST00000600320 PRLHP81277 87 aa12.19□□□□□ -0.46
SHKBP1-222ENST00000600320 FAM19A1Q7Z5A9 133 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms