RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 UBE2BP63146 152 aa9.36□□□□□ -0.91
LIG1-219ENST00000600055 LEPROTO15243 131 aa9.35□□□□□ -0.91
LIG1-219ENST00000600055 TSPEAR-AS2P59090 65 aa9.35□□□□□ -0.91
LIG1-219ENST00000600055 SRSF9Q13242 221 aaKnown RBP eCLIP9.35□□□□□ -0.91
LIG1-219ENST00000600055 A0A0U1RRA0 63 aa9.34□□□□□ -0.91
LIG1-219ENST00000600055 LINC00587B1AMM8 73 aa9.34□□□□□ -0.91
LIG1-219ENST00000600055 E9PLD3 99 aa9.34□□□□□ -0.91
LIG1-219ENST00000600055 OXTP01178 125 aa9.34□□□□□ -0.91
LIG1-219ENST00000600055 LGALS3P17931 250 aaKnown RBP9.34□□□□□ -0.91
LIG1-219ENST00000600055 NMUP48645 174 aa9.34□□□□□ -0.91
LIG1-219ENST00000600055 JOSD1Q15040 202 aaPredicted RBP9.34□□□□□ -0.91
LIG1-219ENST00000600055 SND1-IT1Q9HBX3 110 aa9.34□□□□□ -0.91
LIG1-219ENST00000600055 MYMXA0A1B0GTQ4 84 aa9.33□□□□□ -0.92
LIG1-219ENST00000600055 HERV-K104P63124 156 aa9.33□□□□□ -0.92
LIG1-219ENST00000600055 COX17Q14061 63 aa9.33□□□□□ -0.92
LIG1-219ENST00000600055 SPINK6Q6UWN8 80 aa9.33□□□□□ -0.92
LIG1-219ENST00000600055 PLA2G2DQ9UNK4 145 aa9.33□□□□□ -0.92
LIG1-219ENST00000600055 J3QQQ9 107 aa9.32□□□□□ -0.92
LIG1-219ENST00000600055 LINC00158P58513 81 aa9.32□□□□□ -0.92
LIG1-219ENST00000600055 LCE2DQ5TA82 110 aaPredicted RBP9.32□□□□□ -0.92
LIG1-219ENST00000600055 MRPL55Q7Z7F7 128 aaKnown RBP9.32□□□□□ -0.92
LIG1-219ENST00000600055 TP73-AS1Q9UF72 201 aa9.32□□□□□ -0.92
LIG1-219ENST00000600055 NDUFA12Q9UI09 145 aa9.32□□□□□ -0.92
LIG1-219ENST00000600055 IGLV7-43P04211 117 aa9.31□□□□□ -0.92
LIG1-219ENST00000600055 SMIM13P0DJ93 91 aa9.31□□□□□ -0.92
LIG1-219ENST00000600055 LBHQ53QV2 105 aaPredicted RBP9.31□□□□□ -0.92
LIG1-219ENST00000600055 ATOH7Q8N100 152 aa9.31□□□□□ -0.92
LIG1-219ENST00000600055 LINC00167Q96N53 147 aa9.31□□□□□ -0.92
LIG1-219ENST00000600055 IGLV5-37A0A075B6J1 123 aa9.3□□□□□ -0.92
LIG1-219ENST00000600055 GAGE10A6NGK3 116 aa9.3□□□□□ -0.92
LIG1-219ENST00000600055 MEIG1Q5JSS6 88 aa9.3□□□□□ -0.92
LIG1-219ENST00000600055 Q8NDZ9 215 aa9.3□□□□□ -0.92
LIG1-219ENST00000600055 RPL37AP8A6NKH3 93 aa9.29□□□□□ -0.92
LIG1-219ENST00000600055 VPREB1P12018 145 aa9.29□□□□□ -0.92
LIG1-219ENST00000600055 NKAPP1Q8N9T2 125 aa9.29□□□□□ -0.92
LIG1-219ENST00000600055 HERC1Q15751 4861 aa9.29□□□□□ -0.92
LIG1-219ENST00000600055 C4orf48Q5BLP8 95 aa9.28□□□□□ -0.92
LIG1-219ENST00000600055 MT1HL1P0DM35 61 aa9.27□□□□□ -0.93
LIG1-219ENST00000600055 VAMP8Q9BV40 100 aa9.27□□□□□ -0.93
LIG1-219ENST00000600055 S100A12P80511 92 aa9.26□□□□□ -0.93
LIG1-219ENST00000600055 MIR7-3HGQ8N6C7 128 aa9.26□□□□□ -0.93
LIG1-219ENST00000600055 DMBT1Q9UGM3 2413 aaPredicted RBP9.25□□□□□ -0.93
LIG1-219ENST00000600055 ZNF815PA8K554 130 aa9.24□□□□□ -0.93
LIG1-219ENST00000600055 RPL24P83731 157 aaKnown RBP9.24□□□□□ -0.93
LIG1-219ENST00000600055 PYY3Q5JQD4 70 aa9.24□□□□□ -0.93
LIG1-219ENST00000600055 REG3GQ6UW15 175 aa9.24□□□□□ -0.93
LIG1-219ENST00000600055 LINC01600Q96MT4 127 aa9.24□□□□□ -0.93
LIG1-219ENST00000600055 KRTAP3-3Q9BYR6 98 aa9.24□□□□□ -0.93
LIG1-219ENST00000600055 KRTAP3-2Q9BYR7 98 aa9.24□□□□□ -0.93
LIG1-219ENST00000600055 IGKV2-28A0A075B6P5 120 aa9.23□□□□□ -0.93
LIG1-219ENST00000600055 IGKV2D-28P01615 120 aa9.23□□□□□ -0.93
LIG1-219ENST00000600055 ANKRD39Q53RE8 183 aa9.23□□□□□ -0.93
LIG1-219ENST00000600055 DAND5Q8N907 189 aa9.23□□□□□ -0.93
LIG1-219ENST00000600055 SCGB1D4Q6XE38 83 aa9.22□□□□□ -0.93
LIG1-219ENST00000600055 DIRC1Q969H9 104 aa9.22□□□□□ -0.93
LIG1-219ENST00000600055 IGLV1-50A0A075B6I6 118 aa9.21□□□□□ -0.94
LIG1-219ENST00000600055 IGKV2D-26A0A0A0MRZ7 120 aa9.21□□□□□ -0.94
LIG1-219ENST00000600055 H0Y9J4 135 aa9.21□□□□□ -0.94
LIG1-219ENST00000600055 BCE1O60756 84 aa9.21□□□□□ -0.94
LIG1-219ENST00000600055 SPATA45Q537H7 98 aa9.21□□□□□ -0.94
LIG1-219ENST00000600055 BOD1L2Q8IYS8 172 aa9.21□□□□□ -0.94
LIG1-219ENST00000600055 PAM16Q9Y3D7 125 aa9.21□□□□□ -0.94
LIG1-219ENST00000600055 ZNF861PO60384 105 aa9.2□□□□□ -0.94
LIG1-219ENST00000600055 TIMM17BO60830 172 aa9.2□□□□□ -0.94
LIG1-219ENST00000600055 SMIM6P0DI80 62 aa9.2□□□□□ -0.94
LIG1-219ENST00000600055 COPS9Q8WXC6 57 aa9.2□□□□□ -0.94
LIG1-219ENST00000600055 A0A0J9YXY3 114 aa9.19□□□□□ -0.94
LIG1-219ENST00000600055 LOC105371267A0A1B0GV96 52 aa9.19□□□□□ -0.94
LIG1-219ENST00000600055 TTTY13Q9BZ97 58 aa9.19□□□□□ -0.94
LIG1-219ENST00000600055 TMEM238C9JI98 176 aa9.18□□□□□ -0.94
LIG1-219ENST00000600055 M0R378 163 aa9.18□□□□□ -0.94
LIG1-219ENST00000600055 NCR3O14931 201 aa9.18□□□□□ -0.94
LIG1-219ENST00000600055 COX8AP10176 69 aa9.18□□□□□ -0.94
LIG1-219ENST00000600055 ADAMTSL4-AS1Q5T5F5 129 aa9.18□□□□□ -0.94
LIG1-219ENST00000600055 DLEU1O43261 78 aa9.17□□□□□ -0.94
LIG1-219ENST00000600055 KRTAP10-8P60410 259 aa9.17□□□□□ -0.94
LIG1-219ENST00000600055 PCP2Q8IVA1 136 aa9.17□□□□□ -0.94
LIG1-219ENST00000600055 MIEN1Q9BRT3 115 aa9.17□□□□□ -0.94
LIG1-219ENST00000600055 TNXBP22105 4242 aa9.16□□□□□ -0.94
LIG1-219ENST00000600055 SLC25A34Q6PIV7 304 aa9.16□□□□□ -0.94
LIG1-219ENST00000600055 Q6ZVH6 145 aa9.16□□□□□ -0.94
LIG1-219ENST00000600055 TMEM126AQ9H061 195 aa9.16□□□□□ -0.94
LIG1-219ENST00000600055 LOC107984156A0A0G2JMH3 177 aa9.15□□□□□ -0.94
LIG1-219ENST00000600055 EIF4EBP3O60516 100 aaPredicted RBP9.15□□□□□ -0.94
LIG1-219ENST00000600055 KRTAP1-4P0C5Y4 121 aa9.15□□□□□ -0.94
LIG1-219ENST00000600055 RPL28P46779 137 aaKnown RBP9.15□□□□□ -0.94
LIG1-219ENST00000600055 UBE2AP49459 152 aa9.15□□□□□ -0.94
LIG1-219ENST00000600055 NPC2P61916 151 aa9.15□□□□□ -0.94
LIG1-219ENST00000600055 SOSTDC1Q6X4U4 206 aa9.15□□□□□ -0.94
LIG1-219ENST00000600055 KRTAP13-1Q8IUC0 172 aa9.15□□□□□ -0.94
LIG1-219ENST00000600055 ARL17AQ8IVW1 177 aa9.15□□□□□ -0.94
LIG1-219ENST00000600055 LITAFQ99732 161 aa9.14□□□□□ -0.95
LIG1-219ENST00000600055 PRLHP81277 87 aa9.13□□□□□ -0.95
LIG1-219ENST00000600055 FAM19A1Q7Z5A9 133 aa9.13□□□□□ -0.95
LIG1-219ENST00000600055 PRR26Q8N8Z3 221 aa9.13□□□□□ -0.95
LIG1-219ENST00000600055 C14orf144Q96I85 54 aa9.13□□□□□ -0.95
LIG1-219ENST00000600055 IFITM1P13164 125 aa9.12□□□□□ -0.95
LIG1-219ENST00000600055 TRBV10-3A0A0K0K1G6 114 aa9.11□□□□□ -0.95
LIG1-219ENST00000600055 SPANXDQ9BXN6 97 aa9.11□□□□□ -0.95
LIG1-219ENST00000600055 SPANXCQ9NY87 97 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms