RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 NDUFA5Q16718 116 aa7.93□□□□□ -1.14
TRIM28-211ENST00000597968 TPRXLQ17RH7 258 aa7.93□□□□□ -1.14
TRIM28-211ENST00000597968 YPEL4Q96NS1 127 aa7.93□□□□□ -1.14
TRIM28-211ENST00000597968 TMEM170BQ5T4T1 132 aa7.92□□□□□ -1.14
TRIM28-211ENST00000597968 FAM19A1Q7Z5A9 133 aa7.92□□□□□ -1.14
TRIM28-211ENST00000597968 SPAG11AQ6PDA7 123 aa7.91□□□□□ -1.14
TRIM28-211ENST00000597968 ANAPC11Q9NYG5 84 aa7.91□□□□□ -1.14
TRIM28-211ENST00000597968 M0R378 163 aa7.9□□□□□ -1.14
TRIM28-211ENST00000597968 PRLHP81277 87 aa7.9□□□□□ -1.14
TRIM28-211ENST00000597968 Q8NDZ9 215 aa7.9□□□□□ -1.14
TRIM28-211ENST00000597968 PLEKHB2Q96CS7 222 aa7.9□□□□□ -1.14
TRIM28-211ENST00000597968 CHTOPQ9Y3Y2 248 aaKnown RBP7.9□□□□□ -1.14
TRIM28-211ENST00000597968 CBLN2Q8IUK8 224 aa7.89□□□□□ -1.15
TRIM28-211ENST00000597968 ZNF706Q9Y5V0 76 aaPredicted RBP7.88□□□□□ -1.15
TRIM28-211ENST00000597968 A0A0U1RRA0 63 aa7.87□□□□□ -1.15
TRIM28-211ENST00000597968 LINC00587B1AMM8 73 aa7.87□□□□□ -1.15
TRIM28-211ENST00000597968 TMEM238C9JI98 176 aa7.87□□□□□ -1.15
TRIM28-211ENST00000597968 FAM19A2Q8N3H0 131 aa7.87□□□□□ -1.15
TRIM28-211ENST00000597968 IFI27L1Q96BM0 104 aa7.87□□□□□ -1.15
TRIM28-211ENST00000597968 CHCHD1Q96BP2 118 aaKnown RBP7.87□□□□□ -1.15
TRIM28-211ENST00000597968 CDIP1Q9H305 208 aa7.87□□□□□ -1.15
TRIM28-211ENST00000597968 IGLV7-46A0A075B6I9 117 aa7.86□□□□□ -1.15
TRIM28-211ENST00000597968 TRAV12-1A0A0B4J245 112 aa7.86□□□□□ -1.15
TRIM28-211ENST00000597968 TMEM223A0PJW6 202 aa7.86□□□□□ -1.15
TRIM28-211ENST00000597968 MUC17Q685J3 4493 aa7.86□□□□□ -1.15
TRIM28-211ENST00000597968 FAT4Q6V0I7 4981 aa7.86□□□□□ -1.15
TRIM28-211ENST00000597968 LINC00158P58513 81 aa7.85□□□□□ -1.15
TRIM28-211ENST00000597968 FP248Q71RG6 208 aaPredicted RBP7.85□□□□□ -1.15
TRIM28-211ENST00000597968 HERV-K104P63124 156 aa7.84□□□□□ -1.15
TRIM28-211ENST00000597968 LINC00337Q8N6G1 96 aa7.84□□□□□ -1.15
TRIM28-211ENST00000597968 HIGD2AQ9BW72 106 aa7.84□□□□□ -1.15
TRIM28-211ENST00000597968 PRYO14603 147 aa7.83□□□□□ -1.16
TRIM28-211ENST00000597968 TRGC2P03986 189 aa7.83□□□□□ -1.16
TRIM28-211ENST00000597968 S100A1P23297 94 aa7.83□□□□□ -1.16
TRIM28-211ENST00000597968 SPRR4Q96PI1 79 aa7.83□□□□□ -1.16
TRIM28-211ENST00000597968 RETNLBQ9BQ08 111 aa7.83□□□□□ -1.16
TRIM28-211ENST00000597968 H0Y8G0 127 aa7.82□□□□□ -1.16
TRIM28-211ENST00000597968 HSBP1O75506 76 aa7.82□□□□□ -1.16
TRIM28-211ENST00000597968 SMIM13P0DJ93 91 aa7.82□□□□□ -1.16
TRIM28-211ENST00000597968 SPRR1AP35321 89 aa7.82□□□□□ -1.16
TRIM28-211ENST00000597968 S100A12P80511 92 aa7.82□□□□□ -1.16
TRIM28-211ENST00000597968 C4orf48Q5BLP8 95 aa7.82□□□□□ -1.16
TRIM28-211ENST00000597968 LCE2AQ5TA79 106 aaPredicted RBP7.82□□□□□ -1.16
TRIM28-211ENST00000597968 SLC7A5P1Q8MH63 180 aa7.82□□□□□ -1.16
TRIM28-211ENST00000597968 KCNQ1DNQ9H478 68 aa7.82□□□□□ -1.16
TRIM28-211ENST00000597968 LINC00310P59036 64 aa7.81□□□□□ -1.16
TRIM28-211ENST00000597968 PPDPFQ9H3Y8 114 aa7.81□□□□□ -1.16
TRIM28-211ENST00000597968 C3orf22Q8N5N4 141 aa7.8□□□□□ -1.16
TRIM28-211ENST00000597968 MAP1LC3CQ9BXW4 147 aa7.8□□□□□ -1.16
TRIM28-211ENST00000597968 SPINK1P00995 79 aa7.79□□□□□ -1.16
TRIM28-211ENST00000597968 BOD1L2Q8IYS8 172 aa7.79□□□□□ -1.16
TRIM28-211ENST00000597968 SERF1AO75920 110 aa7.78□□□□□ -1.16
TRIM28-211ENST00000597968 RPS29P62273 56 aaKnown RBP7.78□□□□□ -1.16
TRIM28-211ENST00000597968 MEIG1Q5JSS6 88 aa7.78□□□□□ -1.16
TRIM28-211ENST00000597968 LOC107984156A0A0G2JMH3 177 aa7.77□□□□□ -1.17
TRIM28-211ENST00000597968 MYMXA0A1B0GTQ4 84 aa7.77□□□□□ -1.17
TRIM28-211ENST00000597968 ETDCA0A1B0GVM5 59 aa7.77□□□□□ -1.17
TRIM28-211ENST00000597968 KRTAP4-16G5E9R7 235 aaPredicted RBP7.77□□□□□ -1.17
TRIM28-211ENST00000597968 ARL17AQ8IVW1 177 aa7.77□□□□□ -1.17
TRIM28-211ENST00000597968 MIR7-3HGQ8N6C7 128 aa7.77□□□□□ -1.17
TRIM28-211ENST00000597968 NDUFA12Q9UI09 145 aa7.77□□□□□ -1.17
TRIM28-211ENST00000597968 NCR3O14931 201 aa7.76□□□□□ -1.17
TRIM28-211ENST00000597968 LEPROTL1O95214 131 aa7.76□□□□□ -1.17
TRIM28-211ENST00000597968 FABP4P15090 132 aa7.76□□□□□ -1.17
TRIM28-211ENST00000597968 TSPEAR-AS2P59090 65 aa7.76□□□□□ -1.17
TRIM28-211ENST00000597968 LINC00483Q53H64 154 aa7.76□□□□□ -1.17
TRIM28-211ENST00000597968 PMCHL2Q9BQD1 86 aa7.76□□□□□ -1.17
TRIM28-211ENST00000597968 TRBV10-2A0A0K0K1G8 114 aa7.75□□□□□ -1.17
TRIM28-211ENST00000597968 COLCA2A8K830 154 aa7.75□□□□□ -1.17
TRIM28-211ENST00000597968 KRTAP9-2Q9BYQ4 174 aa7.75□□□□□ -1.17
TRIM28-211ENST00000597968 DAND5Q8N907 189 aa7.74□□□□□ -1.17
TRIM28-211ENST00000597968 Q8NBF4 154 aa7.74□□□□□ -1.17
TRIM28-211ENST00000597968 SMCR5Q8TEV8 140 aa7.74□□□□□ -1.17
TRIM28-211ENST00000597968 SSBP3-AS1Q7Z2R9 100 aa7.73□□□□□ -1.17
TRIM28-211ENST00000597968 TRBV10-3A0A0K0K1G6 114 aa7.72□□□□□ -1.17
TRIM28-211ENST00000597968 LEPROTO15243 131 aa7.72□□□□□ -1.17
TRIM28-211ENST00000597968 PLNP26678 52 aa7.72□□□□□ -1.17
TRIM28-211ENST00000597968 NMUP48645 174 aa7.72□□□□□ -1.17
TRIM28-211ENST00000597968 B5MCH6 92 aa7.71□□□□□ -1.18
TRIM28-211ENST00000597968 KRTAP13-3Q3SY46 172 aa7.71□□□□□ -1.18
TRIM28-211ENST00000597968 ASB16-AS1Q495Z4 193 aa7.71□□□□□ -1.18
TRIM28-211ENST00000597968 HSPB8Q9UJY1 196 aa7.71□□□□□ -1.18
TRIM28-211ENST00000597968 J3QQQ9 107 aa7.7□□□□□ -1.18
TRIM28-211ENST00000597968 DPM2O94777 84 aa7.7□□□□□ -1.18
TRIM28-211ENST00000597968 NDUFC2O95298 119 aa7.7□□□□□ -1.18
TRIM28-211ENST00000597968 DDTP30046 118 aa7.7□□□□□ -1.18
TRIM28-211ENST00000597968 SPANXB1Q9NS25 103 aaPredicted RBP7.7□□□□□ -1.18
TRIM28-211ENST00000597968 C5orf52A6NGY3 159 aa7.69□□□□□ -1.18
TRIM28-211ENST00000597968 JOSD1Q15040 202 aaPredicted RBP7.69□□□□□ -1.18
TRIM28-211ENST00000597968 MIEN1Q9BRT3 115 aa7.69□□□□□ -1.18
TRIM28-211ENST00000597968 CBY1Q9Y3M2 126 aa7.69□□□□□ -1.18
TRIM28-211ENST00000597968 IGKCP01834 107 aa7.68□□□□□ -1.18
TRIM28-211ENST00000597968 SEC61BP60468 96 aaKnown RBP7.68□□□□□ -1.18
TRIM28-211ENST00000597968 HERVK_113P61574 105 aa7.68□□□□□ -1.18
TRIM28-211ENST00000597968 Q6ZRX8 168 aa7.68□□□□□ -1.18
TRIM28-211ENST00000597968 SLC25A20O43772 301 aa7.67□□□□□ -1.18
TRIM28-211ENST00000597968 GAGE2AQ6NT46 116 aa7.67□□□□□ -1.18
TRIM28-211ENST00000597968 EIF4EBP3O60516 100 aaPredicted RBP7.66□□□□□ -1.18
TRIM28-211ENST00000597968 IGLV6-57P01721 117 aa7.66□□□□□ -1.18
TRIM28-211ENST00000597968 LGALS3P17931 250 aaKnown RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms