RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 LINC00587B1AMM8 73 aa12.2□□□□□ -0.46
SHKBP1-214ENST00000597396 SMIM13P0DJ93 91 aa12.2□□□□□ -0.46
SHKBP1-214ENST00000597396 NMUP48645 174 aa12.2□□□□□ -0.46
SHKBP1-214ENST00000597396 HIST1H2BLQ99880 126 aa12.2□□□□□ -0.46
SHKBP1-214ENST00000597396 PLA2G2DQ9UNK4 145 aa12.2□□□□□ -0.46
SHKBP1-214ENST00000597396 HNRNPA3P51991 378 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-214ENST00000597396 LBHQ53QV2 105 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-214ENST00000597396 PSORS1C2Q9UIG4 136 aa12.19□□□□□ -0.46
SHKBP1-214ENST00000597396 SNRPEP62304 92 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-214ENST00000597396 NKAPP1Q8N9T2 125 aa12.18□□□□□ -0.46
SHKBP1-214ENST00000597396 TP73-AS1Q9UF72 201 aa12.18□□□□□ -0.46
SHKBP1-214ENST00000597396 J3QL48 77 aa12.16□□□□□ -0.46
SHKBP1-214ENST00000597396 AKR1D1P51857 326 aa12.16□□□□□ -0.46
SHKBP1-214ENST00000597396 C1orf137Q5JT78 98 aa12.16□□□□□ -0.46
SHKBP1-214ENST00000597396 MRPL55Q7Z7F7 128 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-214ENST00000597396 IGLV5-37A0A075B6J1 123 aa12.15□□□□□ -0.46
SHKBP1-214ENST00000597396 MIR7-3HGQ8N6C7 128 aa12.15□□□□□ -0.46
SHKBP1-214ENST00000597396 RPL24P83731 157 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-214ENST00000597396 KRTAP11-1Q8IUC1 163 aa12.14□□□□□ -0.47
SHKBP1-214ENST00000597396 ATOH7Q8N100 152 aa12.14□□□□□ -0.47
SHKBP1-214ENST00000597396 PKHD1L1Q86WI1 4243 aa12.14□□□□□ -0.47
SHKBP1-214ENST00000597396 C5orf52A6NGY3 159 aa12.12□□□□□ -0.47
SHKBP1-214ENST00000597396 VPREB1P12018 145 aa12.12□□□□□ -0.47
SHKBP1-214ENST00000597396 LINC00167Q96N53 147 aa12.12□□□□□ -0.47
SHKBP1-214ENST00000597396 GAGE10A6NGK3 116 aa12.11□□□□□ -0.47
SHKBP1-214ENST00000597396 IGKV2D-26A0A0A0MRZ7 120 aa12.1□□□□□ -0.47
SHKBP1-214ENST00000597396 A0A0J9YXY3 114 aa12.09□□□□□ -0.47
SHKBP1-214ENST00000597396 RPL37AP8A6NKH3 93 aa12.09□□□□□ -0.47
SHKBP1-214ENST00000597396 ZNF815PA8K554 130 aa12.09□□□□□ -0.47
SHKBP1-214ENST00000597396 BOD1L2Q8IYS8 172 aa12.09□□□□□ -0.47
SHKBP1-214ENST00000597396 DAND5Q8N907 189 aa12.09□□□□□ -0.47
SHKBP1-214ENST00000597396 ANKRD39Q53RE8 183 aa12.08□□□□□ -0.48
SHKBP1-214ENST00000597396 SPINK6Q6UWN8 80 aa12.08□□□□□ -0.48
SHKBP1-214ENST00000597396 IGLV7-43P04211 117 aa12.07□□□□□ -0.48
SHKBP1-214ENST00000597396 Q8NDZ9 215 aa12.07□□□□□ -0.48
SHKBP1-214ENST00000597396 MIEN1Q9BRT3 115 aa12.06□□□□□ -0.48
SHKBP1-214ENST00000597396 TTTY13Q9BZ97 58 aa12.06□□□□□ -0.48
SHKBP1-214ENST00000597396 SRSF9Q13242 221 aaKnown RBP eCLIP12.05□□□□□ -0.48
SHKBP1-214ENST00000597396 IGKV2-28A0A075B6P5 120 aa12.04□□□□□ -0.48
SHKBP1-214ENST00000597396 IGKV2D-28P01615 120 aa12.04□□□□□ -0.48
SHKBP1-214ENST00000597396 KRTAP29-1A8MX34 341 aaPredicted RBP12.03□□□□□ -0.48
SHKBP1-214ENST00000597396 HSBP1L1C9JCN9 74 aa12.03□□□□□ -0.48
SHKBP1-214ENST00000597396 M0R378 163 aa12.03□□□□□ -0.48
SHKBP1-214ENST00000597396 SCGB1D1O95968 90 aa12.03□□□□□ -0.48
SHKBP1-214ENST00000597396 OXTP01178 125 aa12.03□□□□□ -0.48
SHKBP1-214ENST00000597396 LOC107984156A0A0G2JMH3 177 aa12.01□□□□□ -0.49
SHKBP1-214ENST00000597396 NCR3O14931 201 aa12.01□□□□□ -0.49
SHKBP1-214ENST00000597396 TIMM17BO60830 172 aa12.01□□□□□ -0.49
SHKBP1-214ENST00000597396 NPC2P61916 151 aa12.01□□□□□ -0.49
SHKBP1-214ENST00000597396 ADAMTSL4-AS1Q5T5F5 129 aa12.01□□□□□ -0.49
SHKBP1-214ENST00000597396 SCGB1D4Q6XE38 83 aa12.01□□□□□ -0.49
SHKBP1-214ENST00000597396 ARL17AQ8IVW1 177 aa12.01□□□□□ -0.49
SHKBP1-214ENST00000597396 IGLV1-50A0A075B6I6 118 aa12□□□□□ -0.49
SHKBP1-214ENST00000597396 BCE1O60756 84 aa12□□□□□ -0.49
SHKBP1-214ENST00000597396 REG3GQ6UW15 175 aa12□□□□□ -0.49
SHKBP1-214ENST00000597396 DIRC1Q969H9 104 aa12□□□□□ -0.49
SHKBP1-214ENST00000597396 PCP2Q8IVA1 136 aa11.98□□□□□ -0.49
SHKBP1-214ENST00000597396 LITAFQ99732 161 aa11.98□□□□□ -0.49
SHKBP1-214ENST00000597396 TMA7Q9Y2S6 64 aaKnown RBP11.98□□□□□ -0.49
SHKBP1-214ENST00000597396 SOSTDC1Q6X4U4 206 aa11.97□□□□□ -0.49
SHKBP1-214ENST00000597396 TMEM238C9JI98 176 aa11.96□□□□□ -0.49
SHKBP1-214ENST00000597396 ZNF861PO60384 105 aa11.96□□□□□ -0.49
SHKBP1-214ENST00000597396 H0Y9J4 135 aa11.95□□□□□ -0.5
SHKBP1-214ENST00000597396 RPL28P46779 137 aaKnown RBP11.95□□□□□ -0.5
SHKBP1-214ENST00000597396 UBE2AP49459 152 aa11.95□□□□□ -0.5
SHKBP1-214ENST00000597396 LINC00308Q8TCZ7 52 aa11.95□□□□□ -0.5
SHKBP1-214ENST00000597396 TMEM126AQ9H061 195 aa11.95□□□□□ -0.5
SHKBP1-214ENST00000597396 SPANXB1Q9NS25 103 aaPredicted RBP11.95□□□□□ -0.5
SHKBP1-214ENST00000597396 NDUFC2O95298 119 aa11.94□□□□□ -0.5
SHKBP1-214ENST00000597396 FAT3Q8TDW7 4589 aa11.93□□□□□ -0.5
SHKBP1-214ENST00000597396 LRP1Q07954 4544 aaKnown RBP11.93□□□□□ -0.5
SHKBP1-214ENST00000597396 TRBV10-2A0A0K0K1G8 114 aa11.93□□□□□ -0.5
SHKBP1-214ENST00000597396 EIF4EBP3O60516 100 aaPredicted RBP11.93□□□□□ -0.5
SHKBP1-214ENST00000597396 TRBV10-3A0A0K0K1G6 114 aa11.92□□□□□ -0.5
SHKBP1-214ENST00000597396 PRYO14603 147 aa11.92□□□□□ -0.5
SHKBP1-214ENST00000597396 S100A12P80511 92 aa11.92□□□□□ -0.5
SHKBP1-214ENST00000597396 FAM19A1Q7Z5A9 133 aa11.92□□□□□ -0.5
SHKBP1-214ENST00000597396 SPANXDQ9BXN6 97 aa11.92□□□□□ -0.5
SHKBP1-214ENST00000597396 SPANXCQ9NY87 97 aa11.92□□□□□ -0.5
SHKBP1-214ENST00000597396 DDTP30046 118 aa11.9□□□□□ -0.5
SHKBP1-214ENST00000597396 S100A7L2Q5SY68 101 aa11.9□□□□□ -0.5
SHKBP1-214ENST00000597396 LINC01600Q96MT4 127 aa11.9□□□□□ -0.5
SHKBP1-214ENST00000597396 COPS9Q8WXC6 57 aa11.89□□□□□ -0.51
SHKBP1-214ENST00000597396 PRLHP81277 87 aa11.88□□□□□ -0.51
SHKBP1-214ENST00000597396 JOSD1Q15040 202 aaPredicted RBP11.88□□□□□ -0.51
SHKBP1-214ENST00000597396 KCNQ1DNQ9H478 68 aa11.88□□□□□ -0.51
SHKBP1-214ENST00000597396 Q6ZVH6 145 aa11.87□□□□□ -0.51
SHKBP1-214ENST00000597396 KRTAP13-1Q8IUC0 172 aa11.87□□□□□ -0.51
SHKBP1-214ENST00000597396 IFITM1P13164 125 aa11.86□□□□□ -0.51
SHKBP1-214ENST00000597396 ETDCA0A1B0GVM5 59 aa11.84□□□□□ -0.51
SHKBP1-214ENST00000597396 MT1HL1P0DM35 61 aa11.84□□□□□ -0.51
SHKBP1-214ENST00000597396 VAMP8Q9BV40 100 aa11.84□□□□□ -0.51
SHKBP1-214ENST00000597396 PAM16Q9Y3D7 125 aa11.84□□□□□ -0.51
SHKBP1-214ENST00000597396 IGLV6-57P01721 117 aa11.83□□□□□ -0.52
SHKBP1-214ENST00000597396 SPATA45Q537H7 98 aa11.83□□□□□ -0.52
SHKBP1-214ENST00000597396 LINC00518Q8N0U6 118 aa11.83□□□□□ -0.52
SHKBP1-214ENST00000597396 LINC00337Q8N6G1 96 aa11.83□□□□□ -0.52
SHKBP1-214ENST00000597396 OR13C6PQ8NH95 151 aa11.83□□□□□ -0.52
SHKBP1-214ENST00000597396 COX8AP10176 69 aa11.82□□□□□ -0.52
SHKBP1-214ENST00000597396 SPRR1AP35321 89 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms