RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 PET117Q6UWS5 81 aa10.64□□□□□ -0.71
SHKBP1-212ENST00000596163 SND1-IT1Q9HBX3 110 aa10.64□□□□□ -0.71
SHKBP1-212ENST00000596163 DMBT1Q9UGM3 2413 aaPredicted RBP10.63□□□□□ -0.71
SHKBP1-212ENST00000596163 IGLV5-37A0A075B6J1 123 aa10.63□□□□□ -0.71
SHKBP1-212ENST00000596163 MEIG1Q5JSS6 88 aa10.63□□□□□ -0.71
SHKBP1-212ENST00000596163 IGLV7-43P04211 117 aa10.62□□□□□ -0.71
SHKBP1-212ENST00000596163 LGALS3P17931 250 aaKnown RBP10.61□□□□□ -0.71
SHKBP1-212ENST00000596163 NMUP48645 174 aa10.61□□□□□ -0.71
SHKBP1-212ENST00000596163 KRTAP11-1Q8IUC1 163 aa10.61□□□□□ -0.71
SHKBP1-212ENST00000596163 J3QQQ9 107 aa10.6□□□□□ -0.71
SHKBP1-212ENST00000596163 LINC01545Q5VT33 79 aa10.6□□□□□ -0.71
SHKBP1-212ENST00000596163 LINC00167Q96N53 147 aa10.6□□□□□ -0.71
SHKBP1-212ENST00000596163 A0A0U1RRA0 63 aa10.59□□□□□ -0.71
SHKBP1-212ENST00000596163 SMIM13P0DJ93 91 aa10.59□□□□□ -0.71
SHKBP1-212ENST00000596163 DIRC1Q969H9 104 aa10.59□□□□□ -0.71
SHKBP1-212ENST00000596163 HERC1Q15751 4861 aa10.58□□□□□ -0.72
SHKBP1-212ENST00000596163 C3orf79P0CE67 100 aa10.57□□□□□ -0.72
SHKBP1-212ENST00000596163 KRTDAPP60985 99 aa10.57□□□□□ -0.72
SHKBP1-212ENST00000596163 C20orf202A1L168 122 aa10.56□□□□□ -0.72
SHKBP1-212ENST00000596163 GAGE10A6NGK3 116 aa10.56□□□□□ -0.72
SHKBP1-212ENST00000596163 RPL37AP8A6NKH3 93 aa10.56□□□□□ -0.72
SHKBP1-212ENST00000596163 E9PLD3 99 aa10.56□□□□□ -0.72
SHKBP1-212ENST00000596163 VPREB1P12018 145 aa10.56□□□□□ -0.72
SHKBP1-212ENST00000596163 TSPEAR-AS2P59090 65 aa10.56□□□□□ -0.72
SHKBP1-212ENST00000596163 MIR7-3HGQ8N6C7 128 aa10.56□□□□□ -0.72
SHKBP1-212ENST00000596163 LINC01600Q96MT4 127 aa10.56□□□□□ -0.72
SHKBP1-212ENST00000596163 FAT3Q8TDW7 4589 aa10.56□□□□□ -0.72
SHKBP1-212ENST00000596163 AKR1D1P51857 326 aa10.55□□□□□ -0.72
SHKBP1-212ENST00000596163 LRP1Q07954 4544 aaKnown RBP10.54□□□□□ -0.72
SHKBP1-212ENST00000596163 ZNF861PO60384 105 aa10.53□□□□□ -0.72
SHKBP1-212ENST00000596163 BCE1O60756 84 aa10.53□□□□□ -0.72
SHKBP1-212ENST00000596163 S100A6P06703 90 aa10.53□□□□□ -0.72
SHKBP1-212ENST00000596163 H0Y9J4 135 aa10.52□□□□□ -0.73
SHKBP1-212ENST00000596163 S100A2P29034 98 aa10.52□□□□□ -0.73
SHKBP1-212ENST00000596163 RPL28P46779 137 aaKnown RBP10.52□□□□□ -0.73
SHKBP1-212ENST00000596163 BOD1L2Q8IYS8 172 aa10.52□□□□□ -0.73
SHKBP1-212ENST00000596163 IGLV1-50A0A075B6I6 118 aa10.51□□□□□ -0.73
SHKBP1-212ENST00000596163 M0R378 163 aa10.51□□□□□ -0.73
SHKBP1-212ENST00000596163 IGKV2-28A0A075B6P5 120 aa10.5□□□□□ -0.73
SHKBP1-212ENST00000596163 IGKV2D-28P01615 120 aa10.5□□□□□ -0.73
SHKBP1-212ENST00000596163 MT1HL1P0DM35 61 aa10.49□□□□□ -0.73
SHKBP1-212ENST00000596163 MIEN1Q9BRT3 115 aa10.49□□□□□ -0.73
SHKBP1-212ENST00000596163 IGKV2D-26A0A0A0MRZ7 120 aa10.48□□□□□ -0.73
SHKBP1-212ENST00000596163 HIST3H2BBQ8N257 126 aa10.48□□□□□ -0.73
SHKBP1-212ENST00000596163 LOC107984156A0A0G2JMH3 177 aa10.47□□□□□ -0.73
SHKBP1-212ENST00000596163 A0A0J9YXY3 114 aa10.47□□□□□ -0.73
SHKBP1-212ENST00000596163 UBE2AP49459 152 aa10.47□□□□□ -0.73
SHKBP1-212ENST00000596163 ARL17AQ8IVW1 177 aa10.47□□□□□ -0.73
SHKBP1-212ENST00000596163 Q8NDZ9 215 aa10.47□□□□□ -0.73
SHKBP1-212ENST00000596163 DAND5Q8N907 189 aa10.46□□□□□ -0.73
SHKBP1-212ENST00000596163 KRTAP10-8P60410 259 aa10.45□□□□□ -0.74
SHKBP1-212ENST00000596163 S100A12P80511 92 aa10.45□□□□□ -0.74
SHKBP1-212ENST00000596163 HIST1H2BLQ99880 126 aa10.45□□□□□ -0.74
SHKBP1-212ENST00000596163 TMEM126AQ9H061 195 aa10.45□□□□□ -0.74
SHKBP1-212ENST00000596163 ZNF815PA8K554 130 aa10.44□□□□□ -0.74
SHKBP1-212ENST00000596163 SNRPEP62304 92 aaKnown RBP10.44□□□□□ -0.74
SHKBP1-212ENST00000596163 NCR3O14931 201 aa10.43□□□□□ -0.74
SHKBP1-212ENST00000596163 TIMM17BO60830 172 aa10.43□□□□□ -0.74
SHKBP1-212ENST00000596163 TMEM238C9JI98 176 aa10.42□□□□□ -0.74
SHKBP1-212ENST00000596163 NDUFC2O95298 119 aa10.42□□□□□ -0.74
SHKBP1-212ENST00000596163 FAM19A1Q7Z5A9 133 aa10.42□□□□□ -0.74
SHKBP1-212ENST00000596163 TRBV10-2A0A0K0K1G8 114 aa10.41□□□□□ -0.74
SHKBP1-212ENST00000596163 PRYO14603 147 aa10.4□□□□□ -0.74
SHKBP1-212ENST00000596163 ADAMTSL4-AS1Q5T5F5 129 aa10.4□□□□□ -0.74
SHKBP1-212ENST00000596163 KRTAP13-1Q8IUC0 172 aa10.4□□□□□ -0.74
SHKBP1-212ENST00000596163 ATOH7Q8N100 152 aa10.4□□□□□ -0.74
SHKBP1-212ENST00000596163 SPANXB1Q9NS25 103 aaPredicted RBP10.4□□□□□ -0.74
SHKBP1-212ENST00000596163 HSBP1L1C9JCN9 74 aa10.38□□□□□ -0.75
SHKBP1-212ENST00000596163 KRTAP1-4P0C5Y4 121 aa10.38□□□□□ -0.75
SHKBP1-212ENST00000596163 RPL13AP40429 203 aaKnown RBP10.38□□□□□ -0.75
SHKBP1-212ENST00000596163 ANKRD39Q53RE8 183 aa10.38□□□□□ -0.75
SHKBP1-212ENST00000596163 SCGB1D4Q6XE38 83 aa10.38□□□□□ -0.75
SHKBP1-212ENST00000596163 KCNQ1DNQ9H478 68 aa10.38□□□□□ -0.75
SHKBP1-212ENST00000596163 TRBV10-3A0A0K0K1G6 114 aa10.37□□□□□ -0.75
SHKBP1-212ENST00000596163 DDTP30046 118 aa10.37□□□□□ -0.75
SHKBP1-212ENST00000596163 NPC2P61916 151 aa10.37□□□□□ -0.75
SHKBP1-212ENST00000596163 PRLHP81277 87 aa10.37□□□□□ -0.75
SHKBP1-212ENST00000596163 PRR26Q8N8Z3 221 aa10.37□□□□□ -0.75
SHKBP1-212ENST00000596163 C5orf52A6NGY3 159 aa10.36□□□□□ -0.75
SHKBP1-212ENST00000596163 S100A7L2Q5SY68 101 aa10.36□□□□□ -0.75
SHKBP1-212ENST00000596163 LINC00337Q8N6G1 96 aa10.36□□□□□ -0.75
SHKBP1-212ENST00000596163 LINC00308Q8TCZ7 52 aa10.36□□□□□ -0.75
SHKBP1-212ENST00000596163 COPS9Q8WXC6 57 aa10.36□□□□□ -0.75
SHKBP1-212ENST00000596163 LITAFQ99732 161 aa10.36□□□□□ -0.75
SHKBP1-212ENST00000596163 TTTY13Q9BZ97 58 aa10.36□□□□□ -0.75
SHKBP1-212ENST00000596163 CBY1Q9Y3M2 126 aa10.36□□□□□ -0.75
SHKBP1-212ENST00000596163 SOSTDC1Q6X4U4 206 aa10.35□□□□□ -0.75
SHKBP1-212ENST00000596163 ETDCA0A1B0GVM5 59 aa10.34□□□□□ -0.75
SHKBP1-212ENST00000596163 SPANXCQ9NY87 97 aa10.34□□□□□ -0.75
SHKBP1-212ENST00000596163 TNXBP22105 4242 aa10.34□□□□□ -0.75
SHKBP1-212ENST00000596163 SPRR1AP35321 89 aa10.33□□□□□ -0.76
SHKBP1-212ENST00000596163 SCGB1D1O95968 90 aa10.32□□□□□ -0.76
SHKBP1-212ENST00000596163 CRYGAP11844 174 aa10.32□□□□□ -0.76
SHKBP1-212ENST00000596163 Q6ZVH6 145 aa10.32□□□□□ -0.76
SHKBP1-212ENST00000596163 HIGD2AQ9BW72 106 aa10.32□□□□□ -0.76
SHKBP1-212ENST00000596163 SPANXDQ9BXN6 97 aa10.32□□□□□ -0.76
SHKBP1-212ENST00000596163 EIF4EBP3O60516 100 aaPredicted RBP10.31□□□□□ -0.76
SHKBP1-212ENST00000596163 IGLV6-57P01721 117 aa10.31□□□□□ -0.76
SHKBP1-212ENST00000596163 PCP2Q8IVA1 136 aa10.31□□□□□ -0.76
SHKBP1-212ENST00000596163 LINC00518Q8N0U6 118 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms