RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 Q6ZRP5 223 aa14.43□□□□□ -0.1
ATG4D-209ENST00000588857 GAGE2DQ9UEU5 116 aa14.43□□□□□ -0.1
ATG4D-209ENST00000588857 LOC107984640A0A0U1RRK4 108 aa14.42□□□□□ -0.1
ATG4D-209ENST00000588857 RAB37Q96AX2 223 aa14.42□□□□□ -0.1
ATG4D-209ENST00000588857 XAGE1AQ9HD64 81 aa14.42□□□□□ -0.1
ATG4D-209ENST00000588857 DNAH2Q9P225 4427 aa14.41□□□□□ -0.1
ATG4D-209ENST00000588857 A0A1B0GWB2 263 aa14.41□□□□□ -0.1
ATG4D-209ENST00000588857 RTL8CO15255 209 aa14.4□□□□□ -0.1
ATG4D-209ENST00000588857 A0A0B4J2C4 111 aa14.39□□□□□ -0.11
ATG4D-209ENST00000588857 TNP2Q05952 138 aa14.39□□□□□ -0.11
ATG4D-209ENST00000588857 PRO1854Q9UHT4 67 aa14.37□□□□□ -0.11
ATG4D-209ENST00000588857 NDUFC2O95298 119 aa14.36□□□□□ -0.11
ATG4D-209ENST00000588857 GAGE2BQ13066 116 aa14.36□□□□□ -0.11
ATG4D-209ENST00000588857 C9orf163Q8N9P6 203 aa14.36□□□□□ -0.11
ATG4D-209ENST00000588857 PKIGQ9Y2B9 76 aa14.36□□□□□ -0.11
ATG4D-209ENST00000588857 BIRC6Q9NR09 4857 aa14.34□□□□□ -0.11
ATG4D-209ENST00000588857 TAX1BP3O14907 124 aa14.34□□□□□ -0.11
ATG4D-209ENST00000588857 C9orf129Q5T035 196 aaKnown RBP14.33□□□□□ -0.12
ATG4D-209ENST00000588857 IGKV2-28A0A075B6P5 120 aa14.32□□□□□ -0.12
ATG4D-209ENST00000588857 IGKV2D-28P01615 120 aa14.32□□□□□ -0.12
ATG4D-209ENST00000588857 LINC00336Q6ZUF6 198 aa14.32□□□□□ -0.12
ATG4D-209ENST00000588857 FAT2Q9NYQ8 4349 aa14.32□□□□□ -0.12
ATG4D-209ENST00000588857 TRAV13-2A0A0B4J235 113 aa14.31□□□□□ -0.12
ATG4D-209ENST00000588857 PRR3P79522 188 aaKnown RBP14.31□□□□□ -0.12
ATG4D-209ENST00000588857 Q8NDZ9 215 aa14.3□□□□□ -0.12
ATG4D-209ENST00000588857 PGPEP1Q9NXJ5 209 aa14.3□□□□□ -0.12
ATG4D-209ENST00000588857 DNAH17Q9UFH2 4485 aa14.3□□□□□ -0.12
ATG4D-209ENST00000588857 C16orf90A8MZG2 172 aa14.3□□□□□ -0.12
ATG4D-209ENST00000588857 H7C2G1 150 aa14.3□□□□□ -0.12
ATG4D-209ENST00000588857 A0A096LNI7 61 aa14.29□□□□□ -0.12
ATG4D-209ENST00000588857 IGLV5-52A0A0A0MRZ9 124 aa14.29□□□□□ -0.12
ATG4D-209ENST00000588857 NCR3O14931 201 aa14.29□□□□□ -0.12
ATG4D-209ENST00000588857 RPL13AP40429 203 aaKnown RBP14.29□□□□□ -0.12
ATG4D-209ENST00000588857 LINC01620Q4KN68 170 aa14.29□□□□□ -0.12
ATG4D-209ENST00000588857 LINC00337Q8N6G1 96 aa14.29□□□□□ -0.12
ATG4D-209ENST00000588857 IGKV2-24A0A0C4DH68 120 aa14.27□□□□□ -0.12
ATG4D-209ENST00000588857 C9orf118A6NHY6 69 aa14.27□□□□□ -0.12
ATG4D-209ENST00000588857 Q1RN00 199 aa14.27□□□□□ -0.12
ATG4D-209ENST00000588857 SDIM1Q6ZPB5 146 aa14.27□□□□□ -0.12
ATG4D-209ENST00000588857 OR13C6PQ8NH95 151 aa14.27□□□□□ -0.12
ATG4D-209ENST00000588857 HECTD4Q9Y4D8 3996 aa14.27□□□□□ -0.12
ATG4D-209ENST00000588857 TSPAN13O95857 204 aa14.26□□□□□ -0.13
ATG4D-209ENST00000588857 VPREB1P12018 145 aa14.26□□□□□ -0.13
ATG4D-209ENST00000588857 FUSP35637 526 aaKnown RBP eCLIP14.26□□□□□ -0.13
ATG4D-209ENST00000588857 PLA2G2DQ9UNK4 145 aa14.26□□□□□ -0.13
ATG4D-209ENST00000588857 TRBV10-2A0A0K0K1G8 114 aa14.25□□□□□ -0.13
ATG4D-209ENST00000588857 H3BUT2 72 aa14.25□□□□□ -0.13
ATG4D-209ENST00000588857 NAA38Q9BRA0 125 aaKnown RBP14.25□□□□□ -0.13
ATG4D-209ENST00000588857 NKAPP1Q8N9T2 125 aa14.24□□□□□ -0.13
ATG4D-209ENST00000588857 S100A7L2Q5SY68 101 aa14.23□□□□□ -0.13
ATG4D-209ENST00000588857 LINC00474Q9P2X8 69 aa14.23□□□□□ -0.13
ATG4D-209ENST00000588857 SERTAD4-AS1Q5TG53 156 aa14.22□□□□□ -0.13
ATG4D-209ENST00000588857 TMEM126AQ9H061 195 aa14.22□□□□□ -0.13
ATG4D-209ENST00000588857 A0A1B0GVY2 172 aa14.22□□□□□ -0.13
ATG4D-209ENST00000588857 FAM168BA1KXE4 195 aa14.22□□□□□ -0.13
ATG4D-209ENST00000588857 M0R378 163 aa14.22□□□□□ -0.13
ATG4D-209ENST00000588857 CHTF8P0CG12 524 aa14.21□□□□□ -0.14
ATG4D-209ENST00000588857 PSMB2P49721 201 aa14.21□□□□□ -0.14
ATG4D-209ENST00000588857 FAM19A5Q7Z5A7 132 aaPredicted RBP14.2□□□□□ -0.14
ATG4D-209ENST00000588857 KRTAP10-2P60368 255 aa14.19□□□□□ -0.14
ATG4D-209ENST00000588857 IGLV5-37A0A075B6J1 123 aa14.18□□□□□ -0.14
ATG4D-209ENST00000588857 DPH3Q96FX2 82 aa14.17□□□□□ -0.14
ATG4D-209ENST00000588857 A0A1W2PPM0 123 aa14.17□□□□□ -0.14
ATG4D-209ENST00000588857 A0A1B0GV90 55 aa14.16□□□□□ -0.14
ATG4D-209ENST00000588857 IGLV6-57P01721 117 aa14.16□□□□□ -0.14
ATG4D-209ENST00000588857 FABP2P12104 132 aa14.16□□□□□ -0.14
ATG4D-209ENST00000588857 TRBV10-3A0A0K0K1G6 114 aa14.15□□□□□ -0.14
ATG4D-209ENST00000588857 SMIM11BQ8TCY0 68 aa14.15□□□□□ -0.14
ATG4D-209ENST00000588857 C22orf24Q9Y442 160 aa14.15□□□□□ -0.14
ATG4D-209ENST00000588857 TRIAP1O43715 76 aa14.14□□□□□ -0.15
ATG4D-209ENST00000588857 KRTAP7-1Q8IUC3 87 aa14.14□□□□□ -0.15
ATG4D-209ENST00000588857 A0A1W2PNN7 141 aa14.13□□□□□ -0.15
ATG4D-209ENST00000588857 GAGE10A6NGK3 116 aa14.13□□□□□ -0.15
ATG4D-209ENST00000588857 COX6CP09669 75 aa14.13□□□□□ -0.15
ATG4D-209ENST00000588857 SCGB1C2P0DMR2 95 aa14.13□□□□□ -0.15
ATG4D-209ENST00000588857 RPL28P46779 137 aaKnown RBP14.13□□□□□ -0.15
ATG4D-209ENST00000588857 C7orf33Q8WU49 177 aa14.13□□□□□ -0.15
ATG4D-209ENST00000588857 PKD1P98161 4303 aa14.13□□□□□ -0.15
ATG4D-209ENST00000588857 VAMP3Q15836 100 aa14.13□□□□□ -0.15
ATG4D-209ENST00000588857 LYRM7Q5U5X0 104 aa14.13□□□□□ -0.15
ATG4D-209ENST00000588857 SPACA4Q8TDM5 124 aa14.13□□□□□ -0.15
ATG4D-209ENST00000588857 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.13□□□□□ -0.15
ATG4D-209ENST00000588857 PKHD1P08F94 4074 aa14.12□□□□□ -0.15
ATG4D-209ENST00000588857 MRPL55Q7Z7F7 128 aaKnown RBP14.12□□□□□ -0.15
ATG4D-209ENST00000588857 PANO1I0J062 215 aa14.11□□□□□ -0.15
ATG4D-209ENST00000588857 M0QXV9 152 aa14.11□□□□□ -0.15
ATG4D-209ENST00000588857 CBY1Q9Y3M2 126 aa14.11□□□□□ -0.15
ATG4D-209ENST00000588857 LINC00167Q96N53 147 aa14.09□□□□□ -0.15
ATG4D-209ENST00000588857 TRAV23DV6A0A075B6W5 121 aa14.09□□□□□ -0.15
ATG4D-209ENST00000588857 DNAH11Q96DT5 4516 aa14.08□□□□□ -0.16
ATG4D-209ENST00000588857 SPCS1Q9Y6A9 102 aa14.07□□□□□ -0.16
ATG4D-209ENST00000588857 RPL37AP8A6NKH3 93 aa14.06□□□□□ -0.16
ATG4D-209ENST00000588857 DYNC1H1Q14204 4646 aaKnown RBP14.05□□□□□ -0.16
ATG4D-209ENST00000588857 IGLV1-50A0A075B6I6 118 aa14.05□□□□□ -0.16
ATG4D-209ENST00000588857 A0A087WYN8 130 aa14.05□□□□□ -0.16
ATG4D-209ENST00000588857 C6orf99Q4VX62 202 aa14.05□□□□□ -0.16
ATG4D-209ENST00000588857 KCNQ1DNQ9H478 68 aa14.04□□□□□ -0.16
ATG4D-209ENST00000588857 ZNF73O43830 326 aaPredicted RBP14.03□□□□□ -0.16
ATG4D-209ENST00000588857 TRBV20-1A0A075B6N2 111 aa14.02□□□□□ -0.16
ATG4D-209ENST00000588857 H0YGX0 51 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms