RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 HIST1H2BOP23527 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 HIST1H2BBP33778 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 LINC00158P58513 81 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 HIST1H2BDP58876 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 HIST1H2BCP62807 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 HIST2H2BEQ16778 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.05□□□□□ -0.96
VPS39-210ENST00000568357 NKAPP1Q8N9T2 125 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 Q8NDZ9 215 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 HIST1H2BHQ93079 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 HIST1H2BNQ99877 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 HIST1H2BMQ99879 126 aa9.05□□□□□ -0.96
VPS39-210ENST00000568357 A0A0U1RRA0 63 aa9.04□□□□□ -0.96
VPS39-210ENST00000568357 BCE1O60756 84 aa9.04□□□□□ -0.96
VPS39-210ENST00000568357 PRR26Q8N8Z3 221 aa9.04□□□□□ -0.96
VPS39-210ENST00000568357 PMCHL2Q9BQD1 86 aa9.04□□□□□ -0.96
VPS39-210ENST00000568357 SMIM13P0DJ93 91 aa9.02□□□□□ -0.97
VPS39-210ENST00000568357 PLNP26678 52 aa9.02□□□□□ -0.97
VPS39-210ENST00000568357 NDUFA12Q9UI09 145 aa9.02□□□□□ -0.97
VPS39-210ENST00000568357 IGLV1-50A0A075B6I6 118 aa9.01□□□□□ -0.97
VPS39-210ENST00000568357 IGKV2-28A0A075B6P5 120 aa9.01□□□□□ -0.97
VPS39-210ENST00000568357 DPM2O94777 84 aa9.01□□□□□ -0.97
VPS39-210ENST00000568357 IGKV2D-28P01615 120 aa9.01□□□□□ -0.97
VPS39-210ENST00000568357 TSPEAR-AS2P59090 65 aa9.01□□□□□ -0.97
VPS39-210ENST00000568357 RPL24P83731 157 aaKnown RBP9.01□□□□□ -0.97
VPS39-210ENST00000568357 MAP1LC3CQ9BXW4 147 aa9□□□□□ -0.97
VPS39-210ENST00000568357 LEPROTO15243 131 aa8.99□□□□□ -0.97
VPS39-210ENST00000568357 IGKCP01834 107 aa8.99□□□□□ -0.97
VPS39-210ENST00000568357 RPL28P46779 137 aaKnown RBP8.99□□□□□ -0.97
VPS39-210ENST00000568357 HERV-K104P63124 156 aa8.99□□□□□ -0.97
VPS39-210ENST00000568357 MYMXA0A1B0GTQ4 84 aa8.98□□□□□ -0.97
VPS39-210ENST00000568357 MEIG1Q5JSS6 88 aa8.98□□□□□ -0.97
VPS39-210ENST00000568357 KRTAP13-1Q8IUC0 172 aa8.98□□□□□ -0.97
VPS39-210ENST00000568357 MIR7-3HGQ8N6C7 128 aa8.98□□□□□ -0.97
VPS39-210ENST00000568357 TMEM238C9JI98 176 aa8.97□□□□□ -0.97
VPS39-210ENST00000568357 J3QQQ9 107 aa8.97□□□□□ -0.97
VPS39-210ENST00000568357 ATP6V1G1O75348 118 aa8.97□□□□□ -0.97
VPS39-210ENST00000568357 PLEKHB2Q96CS7 222 aa8.97□□□□□ -0.97
VPS39-210ENST00000568357 KRTAP9-6A0A140TA67 174 aa8.96□□□□□ -0.98
VPS39-210ENST00000568357 SYS1-DBNDD2H3BUS1 97 aa8.96□□□□□ -0.98
VPS39-210ENST00000568357 TMEM126AQ9H061 195 aa8.96□□□□□ -0.98
VPS39-210ENST00000568357 LINC00587B1AMM8 73 aa8.95□□□□□ -0.98
VPS39-210ENST00000568357 M0R378 163 aa8.95□□□□□ -0.98
VPS39-210ENST00000568357 UBE2AP49459 152 aa8.95□□□□□ -0.98
VPS39-210ENST00000568357 HERVK_113P61574 105 aa8.95□□□□□ -0.98
VPS39-210ENST00000568357 BOD1L2Q8IYS8 172 aa8.95□□□□□ -0.98
VPS39-210ENST00000568357 LPAP08519 4548 aa8.94□□□□□ -0.98
VPS39-210ENST00000568357 PRLHP81277 87 aa8.93□□□□□ -0.98
VPS39-210ENST00000568357 COA6Q5JTJ3 125 aaKnown RBP8.93□□□□□ -0.98
VPS39-210ENST00000568357 FAM19A1Q7Z5A9 133 aa8.93□□□□□ -0.98
VPS39-210ENST00000568357 DAND5Q8N907 189 aa8.93□□□□□ -0.98
VPS39-210ENST00000568357 LGALS3P17931 250 aaKnown RBP8.92□□□□□ -0.98
VPS39-210ENST00000568357 NMUP48645 174 aa8.92□□□□□ -0.98
VPS39-210ENST00000568357 LINC01545Q5VT33 79 aa8.92□□□□□ -0.98
VPS39-210ENST00000568357 ANAPC11Q9NYG5 84 aa8.92□□□□□ -0.98
VPS39-210ENST00000568357 E9PLD3 99 aa8.91□□□□□ -0.98
VPS39-210ENST00000568357 NCR3O14931 201 aa8.91□□□□□ -0.98
VPS39-210ENST00000568357 RPL13AP40429 203 aaKnown RBP8.91□□□□□ -0.98
VPS39-210ENST00000568357 PET117Q6UWS5 81 aa8.91□□□□□ -0.98
VPS39-210ENST00000568357 A0A087X002 238 aa8.9□□□□□ -0.98
VPS39-210ENST00000568357 LOC107984156A0A0G2JMH3 177 aa8.9□□□□□ -0.98
VPS39-210ENST00000568357 ARL17AQ8IVW1 177 aa8.9□□□□□ -0.98
VPS39-210ENST00000568357 FAT4Q6V0I7 4981 aa8.89□□□□□ -0.99
VPS39-210ENST00000568357 C3orf79P0CE67 100 aa8.89□□□□□ -0.99
VPS39-210ENST00000568357 IGKV2D-26A0A0A0MRZ7 120 aa8.88□□□□□ -0.99
VPS39-210ENST00000568357 A0A0J9YXY3 114 aa8.88□□□□□ -0.99
VPS39-210ENST00000568357 ADAMTSL4-AS1Q5T5F5 129 aa8.88□□□□□ -0.99
VPS39-210ENST00000568357 CRYGAP11844 174 aa8.87□□□□□ -0.99
VPS39-210ENST00000568357 KCNQ1DNQ9H478 68 aa8.87□□□□□ -0.99
VPS39-210ENST00000568357 TRBV10-3A0A0K0K1G6 114 aa8.86□□□□□ -0.99
VPS39-210ENST00000568357 EIF4EBP3O60516 100 aaPredicted RBP8.86□□□□□ -0.99
VPS39-210ENST00000568357 KRTDAPP60985 99 aa8.86□□□□□ -0.99
VPS39-210ENST00000568357 PRYO14603 147 aa8.85□□□□□ -0.99
VPS39-210ENST00000568357 SPRR1AP35321 89 aa8.85□□□□□ -0.99
VPS39-210ENST00000568357 KRTAP13-2Q52LG2 175 aa8.85□□□□□ -0.99
VPS39-210ENST00000568357 SOSTDC1Q6X4U4 206 aa8.85□□□□□ -0.99
VPS39-210ENST00000568357 KRTAP4-16G5E9R7 235 aaPredicted RBP8.84□□□□□ -0.99
VPS39-210ENST00000568357 HIGD2AQ9BW72 106 aa8.84□□□□□ -0.99
VPS39-210ENST00000568357 TRBV10-2A0A0K0K1G8 114 aa8.83□□□□□ -1
VPS39-210ENST00000568357 S100A1P23297 94 aa8.83□□□□□ -1
VPS39-210ENST00000568357 NPC2P61916 151 aa8.83□□□□□ -1
VPS39-210ENST00000568357 FAM229BQ4G0N7 80 aa8.83□□□□□ -1
VPS39-210ENST00000568357 TYMSOSQ8TAI1 123 aa8.83□□□□□ -1
VPS39-210ENST00000568357 LINC00337Q8N6G1 96 aa8.82□□□□□ -1
VPS39-210ENST00000568357 LITAFQ99732 161 aa8.82□□□□□ -1
VPS39-210ENST00000568357 MIEN1Q9BRT3 115 aa8.82□□□□□ -1
VPS39-210ENST00000568357 TTTY13Q9BZ97 58 aa8.82□□□□□ -1
VPS39-210ENST00000568357 MUC2Q02817 5179 aa8.81□□□□□ -1
VPS39-210ENST00000568357 NDUFC2O95298 119 aa8.81□□□□□ -1
VPS39-210ENST00000568357 DDTP30046 118 aa8.81□□□□□ -1
VPS39-210ENST00000568357 SPANXB1Q9NS25 103 aaPredicted RBP8.81□□□□□ -1
VPS39-210ENST00000568357 TSPAN13O95857 204 aa8.8□□□□□ -1
VPS39-210ENST00000568357 ETDCA0A1B0GVM5 59 aa8.79□□□□□ -1
VPS39-210ENST00000568357 ZNF815PA8K554 130 aa8.79□□□□□ -1
VPS39-210ENST00000568357 B5MCH6 92 aa8.78□□□□□ -1
VPS39-210ENST00000568357 TIMM17BO60830 172 aa8.78□□□□□ -1
VPS39-210ENST00000568357 IGLV6-57P01721 117 aa8.78□□□□□ -1
VPS39-210ENST00000568357 ATOH7Q8N100 152 aa8.78□□□□□ -1
VPS39-210ENST00000568357 LINC00308Q8TCZ7 52 aa8.78□□□□□ -1
VPS39-210ENST00000568357 SMCR5Q8TEV8 140 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms