RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NDUFA6P56556 154 aa9.45□□□□□ -0.9
CLN3-229ENST00000567963 ANAPC11Q9NYG5 84 aa9.45□□□□□ -0.9
CLN3-229ENST00000567963 HBDP02042 147 aa9.44□□□□□ -0.9
CLN3-229ENST00000567963 UBE2AP49459 152 aa9.44□□□□□ -0.9
CLN3-229ENST00000567963 IGKV2-28A0A075B6P5 120 aa9.43□□□□□ -0.9
CLN3-229ENST00000567963 IGKV2D-28P01615 120 aa9.43□□□□□ -0.9
CLN3-229ENST00000567963 ZNF22P17026 224 aaPredicted RBP9.42□□□□□ -0.9
CLN3-229ENST00000567963 PMCHL1Q16048 86 aa9.41□□□□□ -0.9
CLN3-229ENST00000567963 KRTAP13-2Q52LG2 175 aa9.41□□□□□ -0.9
CLN3-229ENST00000567963 C5orf52A6NGY3 159 aa9.4□□□□□ -0.9
CLN3-229ENST00000567963 S100A6P06703 90 aa9.4□□□□□ -0.9
CLN3-229ENST00000567963 COX17Q14061 63 aa9.4□□□□□ -0.9
CLN3-229ENST00000567963 FAM19A2Q8N3H0 131 aa9.4□□□□□ -0.9
CLN3-229ENST00000567963 SND1-IT1Q9HBX3 110 aa9.4□□□□□ -0.9
CLN3-229ENST00000567963 ERG28Q9UKR5 140 aa9.4□□□□□ -0.9
CLN3-229ENST00000567963 VPREB1P12018 145 aa9.4□□□□□ -0.91
CLN3-229ENST00000567963 FAM229BQ4G0N7 80 aa9.4□□□□□ -0.91
CLN3-229ENST00000567963 HIST3H2BBQ8N257 126 aa9.4□□□□□ -0.91
CLN3-229ENST00000567963 TMA7Q9Y2S6 64 aaKnown RBP9.39□□□□□ -0.91
CLN3-229ENST00000567963 RPL24P83731 157 aaKnown RBP9.38□□□□□ -0.91
CLN3-229ENST00000567963 ZNF625Q96I27 306 aaPredicted RBP9.38□□□□□ -0.91
CLN3-229ENST00000567963 TMEM126AQ9H061 195 aa9.38□□□□□ -0.91
CLN3-229ENST00000567963 SNRPEP62304 92 aaKnown RBP9.37□□□□□ -0.91
CLN3-229ENST00000567963 PRLHP81277 87 aa9.37□□□□□ -0.91
CLN3-229ENST00000567963 C11orf86A6NJI1 115 aa9.36□□□□□ -0.91
CLN3-229ENST00000567963 TMEM238C9JI98 176 aa9.36□□□□□ -0.91
CLN3-229ENST00000567963 LEPROTL1O95214 131 aa9.36□□□□□ -0.91
CLN3-229ENST00000567963 FAM19A1Q7Z5A9 133 aa9.36□□□□□ -0.91
CLN3-229ENST00000567963 TMEM170BQ5T4T1 132 aa9.35□□□□□ -0.91
CLN3-229ENST00000567963 SFTA2Q6UW10 78 aa9.35□□□□□ -0.91
CLN3-229ENST00000567963 Q8NDZ9 215 aa9.35□□□□□ -0.91
CLN3-229ENST00000567963 M0R378 163 aa9.34□□□□□ -0.91
CLN3-229ENST00000567963 LINC00304Q8N9R0 145 aa9.34□□□□□ -0.91
CLN3-229ENST00000567963 HIST1H2BLQ99880 126 aa9.34□□□□□ -0.91
CLN3-229ENST00000567963 HSPB8Q9UJY1 196 aa9.34□□□□□ -0.91
CLN3-229ENST00000567963 IGKV2D-26A0A0A0MRZ7 120 aa9.34□□□□□ -0.91
CLN3-229ENST00000567963 IFI27L1Q96BM0 104 aa9.33□□□□□ -0.92
CLN3-229ENST00000567963 PLEKHB2Q96CS7 222 aa9.33□□□□□ -0.92
CLN3-229ENST00000567963 RETNLBQ9BQ08 111 aa9.33□□□□□ -0.92
CLN3-229ENST00000567963 FABP4P15090 132 aa9.32□□□□□ -0.92
CLN3-229ENST00000567963 S100A2P29034 98 aa9.32□□□□□ -0.92
CLN3-229ENST00000567963 CHTOPQ9Y3Y2 248 aaKnown RBP9.31□□□□□ -0.92
CLN3-229ENST00000567963 A0A0U1RQV1 116 aa9.3□□□□□ -0.92
CLN3-229ENST00000567963 LINC00158P58513 81 aa9.3□□□□□ -0.92
CLN3-229ENST00000567963 CTAG1AP78358 180 aa9.3□□□□□ -0.92
CLN3-229ENST00000567963 TRAV12-1A0A0B4J245 112 aa9.29□□□□□ -0.92
CLN3-229ENST00000567963 TMEM223A0PJW6 202 aa9.28□□□□□ -0.92
CLN3-229ENST00000567963 MAP1LC3CQ9BXW4 147 aa9.28□□□□□ -0.92
CLN3-229ENST00000567963 A0A0U1RRA0 63 aa9.28□□□□□ -0.92
CLN3-229ENST00000567963 C3orf79P0CE67 100 aa9.28□□□□□ -0.92
CLN3-229ENST00000567963 HIGD2AQ9BW72 106 aa9.28□□□□□ -0.92
CLN3-229ENST00000567963 SYS1-DBNDD2H3BUS1 97 aa9.27□□□□□ -0.93
CLN3-229ENST00000567963 C3orf22Q8N5N4 141 aa9.27□□□□□ -0.93
CLN3-229ENST00000567963 TPRXLQ17RH7 258 aa9.26□□□□□ -0.93
CLN3-229ENST00000567963 LINC01545Q5VT33 79 aa9.25□□□□□ -0.93
CLN3-229ENST00000567963 PET117Q6UWS5 81 aa9.25□□□□□ -0.93
CLN3-229ENST00000567963 IGLV7-46A0A075B6I9 117 aa9.24□□□□□ -0.93
CLN3-229ENST00000567963 SMIM13P0DJ93 91 aa9.24□□□□□ -0.93
CLN3-229ENST00000567963 SPRR4Q96PI1 79 aa9.24□□□□□ -0.93
CLN3-229ENST00000567963 CDIP1Q9H305 208 aa9.24□□□□□ -0.93
CLN3-229ENST00000567963 KRTDAPP60985 99 aa9.23□□□□□ -0.93
CLN3-229ENST00000567963 H0Y8G0 127 aa9.21□□□□□ -0.93
CLN3-229ENST00000567963 MEIG1Q5JSS6 88 aa9.21□□□□□ -0.93
CLN3-229ENST00000567963 SPAG11AQ6PDA7 123 aa9.21□□□□□ -0.93
CLN3-229ENST00000567963 BOD1L2Q8IYS8 172 aa9.21□□□□□ -0.93
CLN3-229ENST00000567963 PRYO14603 147 aa9.21□□□□□ -0.94
CLN3-229ENST00000567963 HERV-K104P63124 156 aa9.21□□□□□ -0.94
CLN3-229ENST00000567963 MIR7-3HGQ8N6C7 128 aa9.21□□□□□ -0.94
CLN3-229ENST00000567963 ZNF706Q9Y5V0 76 aaPredicted RBP9.21□□□□□ -0.94
CLN3-229ENST00000567963 MUC17Q685J3 4493 aa9.2□□□□□ -0.94
CLN3-229ENST00000567963 PLNP26678 52 aa9.2□□□□□ -0.94
CLN3-229ENST00000567963 SPRR1AP35321 89 aa9.2□□□□□ -0.94
CLN3-229ENST00000567963 LINC00337Q8N6G1 96 aa9.2□□□□□ -0.94
CLN3-229ENST00000567963 PPDPFQ9H3Y8 114 aa9.2□□□□□ -0.94
CLN3-229ENST00000567963 KCNQ1DNQ9H478 68 aa9.2□□□□□ -0.94
CLN3-229ENST00000567963 C20orf202A1L168 122 aa9.19□□□□□ -0.94
CLN3-229ENST00000567963 LINC00587B1AMM8 73 aa9.19□□□□□ -0.94
CLN3-229ENST00000567963 NCR3O14931 201 aa9.19□□□□□ -0.94
CLN3-229ENST00000567963 DPM2O94777 84 aa9.19□□□□□ -0.94
CLN3-229ENST00000567963 FAT4Q6V0I7 4981 aa9.18□□□□□ -0.94
CLN3-229ENST00000567963 KRTAP4-16G5E9R7 235 aaPredicted RBP9.18□□□□□ -0.94
CLN3-229ENST00000567963 AKR1D1P51857 326 aa9.18□□□□□ -0.94
CLN3-229ENST00000567963 LCE2AQ5TA79 106 aaPredicted RBP9.18□□□□□ -0.94
CLN3-229ENST00000567963 PMCHL2Q9BQD1 86 aa9.18□□□□□ -0.94
CLN3-229ENST00000567963 NDUFA12Q9UI09 145 aa9.18□□□□□ -0.94
CLN3-229ENST00000567963 LOC105371267A0A1B0GV96 52 aa9.17□□□□□ -0.94
CLN3-229ENST00000567963 IGKCP01834 107 aa9.17□□□□□ -0.94
CLN3-229ENST00000567963 SMCR5Q8TEV8 140 aa9.17□□□□□ -0.94
CLN3-229ENST00000567963 MYMXA0A1B0GTQ4 84 aa9.16□□□□□ -0.94
CLN3-229ENST00000567963 JOSD1Q15040 202 aaPredicted RBP9.16□□□□□ -0.94
CLN3-229ENST00000567963 C4orf48Q5BLP8 95 aa9.16□□□□□ -0.94
CLN3-229ENST00000567963 TRBV10-3A0A0K0K1G6 114 aa9.15□□□□□ -0.94
CLN3-229ENST00000567963 ETDCA0A1B0GVM5 59 aa9.15□□□□□ -0.94
CLN3-229ENST00000567963 DAND5Q8N907 189 aa9.15□□□□□ -0.95
CLN3-229ENST00000567963 Q8NBF4 154 aa9.15□□□□□ -0.95
CLN3-229ENST00000567963 PYY3Q5JQD4 70 aa9.14□□□□□ -0.95
CLN3-229ENST00000567963 FP248Q71RG6 208 aaPredicted RBP9.14□□□□□ -0.95
CLN3-229ENST00000567963 LOC107984156A0A0G2JMH3 177 aa9.13□□□□□ -0.95
CLN3-229ENST00000567963 ARL17AQ8IVW1 177 aa9.13□□□□□ -0.95
CLN3-229ENST00000567963 SCGB1D1O95968 90 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms