RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 HIST1H2BCP62807 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST2H2BEQ16778 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST1H2BHQ93079 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 LINC00167Q96N53 147 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST1H2BNQ99877 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 HIST1H2BMQ99879 126 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 SND1-IT1Q9HBX3 110 aa8.16□□□□□ -1.1
CLK3-213ENST00000563842 PLEKHB2Q96CS7 222 aa8.15□□□□□ -1.1
CLK3-213ENST00000563842 MYMXA0A1B0GTQ4 84 aa8.14□□□□□ -1.11
CLK3-213ENST00000563842 ZNF861PO60384 105 aa8.14□□□□□ -1.11
CLK3-213ENST00000563842 IGKCP01834 107 aa8.14□□□□□ -1.11
CLK3-213ENST00000563842 MEIG1Q5JSS6 88 aa8.14□□□□□ -1.11
CLK3-213ENST00000563842 NDUFA12Q9UI09 145 aa8.14□□□□□ -1.11
CLK3-213ENST00000563842 GAGE10A6NGK3 116 aa8.13□□□□□ -1.11
CLK3-213ENST00000563842 RPL37AP8A6NKH3 93 aa8.13□□□□□ -1.11
CLK3-213ENST00000563842 LEPROTO15243 131 aa8.13□□□□□ -1.11
CLK3-213ENST00000563842 BCE1O60756 84 aa8.13□□□□□ -1.11
CLK3-213ENST00000563842 KRTAP10-8P60410 259 aa8.13□□□□□ -1.11
CLK3-213ENST00000563842 HMCN2Q8NDA2 5059 aa8.12□□□□□ -1.11
CLK3-213ENST00000563842 VPREB1P12018 145 aa8.12□□□□□ -1.11
CLK3-213ENST00000563842 RPL28P46779 137 aaKnown RBP8.12□□□□□ -1.11
CLK3-213ENST00000563842 A0A0U1RRA0 63 aa8.11□□□□□ -1.11
CLK3-213ENST00000563842 J3QQQ9 107 aa8.1□□□□□ -1.11
CLK3-213ENST00000563842 SMIM13P0DJ93 91 aa8.1□□□□□ -1.11
CLK3-213ENST00000563842 NMUP48645 174 aa8.1□□□□□ -1.11
CLK3-213ENST00000563842 PMCHL2Q9BQD1 86 aa8.1□□□□□ -1.11
CLK3-213ENST00000563842 IGLV1-50A0A075B6I6 118 aa8.09□□□□□ -1.11
CLK3-213ENST00000563842 IGKV2-28A0A075B6P5 120 aa8.09□□□□□ -1.11
CLK3-213ENST00000563842 SYS1-DBNDD2H3BUS1 97 aa8.09□□□□□ -1.11
CLK3-213ENST00000563842 IGKV2D-28P01615 120 aa8.09□□□□□ -1.11
CLK3-213ENST00000563842 LGALS3P17931 250 aaKnown RBP8.09□□□□□ -1.11
CLK3-213ENST00000563842 TNXBP22105 4242 aa8.08□□□□□ -1.12
CLK3-213ENST00000563842 S100A1P23297 94 aa8.08□□□□□ -1.12
CLK3-213ENST00000563842 UBE2AP49459 152 aa8.08□□□□□ -1.12
CLK3-213ENST00000563842 COA6Q5JTJ3 125 aaKnown RBP8.08□□□□□ -1.12
CLK3-213ENST00000563842 MIR7-3HGQ8N6C7 128 aa8.08□□□□□ -1.12
CLK3-213ENST00000563842 M0R378 163 aa8.07□□□□□ -1.12
CLK3-213ENST00000563842 RPL13AP40429 203 aaKnown RBP8.07□□□□□ -1.12
CLK3-213ENST00000563842 PET117Q6UWS5 81 aa8.07□□□□□ -1.12
CLK3-213ENST00000563842 TSPEAR-AS2P59090 65 aa8.06□□□□□ -1.12
CLK3-213ENST00000563842 BOD1L2Q8IYS8 172 aa8.06□□□□□ -1.12
CLK3-213ENST00000563842 IGKV2D-26A0A0A0MRZ7 120 aa8.05□□□□□ -1.12
CLK3-213ENST00000563842 E9PLD3 99 aa8.05□□□□□ -1.12
CLK3-213ENST00000563842 KRTAP1-4P0C5Y4 121 aa8.05□□□□□ -1.12
CLK3-213ENST00000563842 LINC01545Q5VT33 79 aa8.05□□□□□ -1.12
CLK3-213ENST00000563842 PRR26Q8N8Z3 221 aa8.05□□□□□ -1.12
CLK3-213ENST00000563842 Q8NDZ9 215 aa8.04□□□□□ -1.12
CLK3-213ENST00000563842 MIEN1Q9BRT3 115 aa8.04□□□□□ -1.12
CLK3-213ENST00000563842 TMEM126AQ9H061 195 aa8.04□□□□□ -1.12
CLK3-213ENST00000563842 LOC107984156A0A0G2JMH3 177 aa8.03□□□□□ -1.12
CLK3-213ENST00000563842 S100A12P80511 92 aa8.03□□□□□ -1.12
CLK3-213ENST00000563842 FAM19A1Q7Z5A9 133 aa8.03□□□□□ -1.12
CLK3-213ENST00000563842 KRTAP13-1Q8IUC0 172 aa8.03□□□□□ -1.12
CLK3-213ENST00000563842 ARL17AQ8IVW1 177 aa8.03□□□□□ -1.12
CLK3-213ENST00000563842 C20orf202A1L168 122 aa8.02□□□□□ -1.13
CLK3-213ENST00000563842 C3orf79P0CE67 100 aa8.02□□□□□ -1.13
CLK3-213ENST00000563842 AKR1D1P51857 326 aa8.02□□□□□ -1.13
CLK3-213ENST00000563842 TMEM238C9JI98 176 aa8.01□□□□□ -1.13
CLK3-213ENST00000563842 PRYO14603 147 aa8.01□□□□□ -1.13
CLK3-213ENST00000563842 KRTDAPP60985 99 aa8.01□□□□□ -1.13
CLK3-213ENST00000563842 NCR3O14931 201 aa8□□□□□ -1.13
CLK3-213ENST00000563842 DAND5Q8N907 189 aa8□□□□□ -1.13
CLK3-213ENST00000563842 A0A0J9YXY3 114 aa7.99□□□□□ -1.13
CLK3-213ENST00000563842 TRBV10-2A0A0K0K1G8 114 aa7.99□□□□□ -1.13
CLK3-213ENST00000563842 CRYGAP11844 174 aa7.99□□□□□ -1.13
CLK3-213ENST00000563842 PRLHP81277 87 aa7.99□□□□□ -1.13
CLK3-213ENST00000563842 KRTAP9-6A0A140TA67 174 aa7.98□□□□□ -1.13
CLK3-213ENST00000563842 NDUFC2O95298 119 aa7.98□□□□□ -1.13
CLK3-213ENST00000563842 KCNQ1DNQ9H478 68 aa7.98□□□□□ -1.13
CLK3-213ENST00000563842 LINC00337Q8N6G1 96 aa7.97□□□□□ -1.13
CLK3-213ENST00000563842 SPANXB1Q9NS25 103 aaPredicted RBP7.97□□□□□ -1.13
CLK3-213ENST00000563842 RNF213Q63HN8 5207 aa7.97□□□□□ -1.13
CLK3-213ENST00000563842 TRBV10-3A0A0K0K1G6 114 aa7.96□□□□□ -1.14
CLK3-213ENST00000563842 ZNF815PA8K554 130 aa7.96□□□□□ -1.14
CLK3-213ENST00000563842 TIMM17BO60830 172 aa7.96□□□□□ -1.14
CLK3-213ENST00000563842 FAM229BQ4G0N7 80 aa7.96□□□□□ -1.14
CLK3-213ENST00000563842 KRTAP9-2Q9BYQ4 174 aa7.96□□□□□ -1.14
CLK3-213ENST00000563842 ETDCA0A1B0GVM5 59 aa7.95□□□□□ -1.14
CLK3-213ENST00000563842 DDTP30046 118 aa7.95□□□□□ -1.14
CLK3-213ENST00000563842 SPRR1AP35321 89 aa7.95□□□□□ -1.14
CLK3-213ENST00000563842 S100A7L2Q5SY68 101 aa7.95□□□□□ -1.14
CLK3-213ENST00000563842 TYMSOSQ8TAI1 123 aa7.95□□□□□ -1.14
CLK3-213ENST00000563842 HIGD2AQ9BW72 106 aa7.95□□□□□ -1.14
CLK3-213ENST00000563842 CBY1Q9Y3M2 126 aa7.95□□□□□ -1.14
CLK3-213ENST00000563842 S100A6P06703 90 aa7.94□□□□□ -1.14
CLK3-213ENST00000563842 S100A2P29034 98 aa7.94□□□□□ -1.14
CLK3-213ENST00000563842 ADAMTSL4-AS1Q5T5F5 129 aa7.94□□□□□ -1.14
CLK3-213ENST00000563842 A0A087X002 238 aa7.93□□□□□ -1.14
CLK3-213ENST00000563842 ZNF706Q9Y5V0 76 aaPredicted RBP7.93□□□□□ -1.14
CLK3-213ENST00000563842 NPC2P61916 151 aa7.92□□□□□ -1.14
CLK3-213ENST00000563842 SNRPEP62304 92 aaKnown RBP7.92□□□□□ -1.14
CLK3-213ENST00000563842 KRTAP4-16G5E9R7 235 aaPredicted RBP7.91□□□□□ -1.14
CLK3-213ENST00000563842 IGLV6-57P01721 117 aa7.91□□□□□ -1.14
CLK3-213ENST00000563842 SOSTDC1Q6X4U4 206 aa7.91□□□□□ -1.14
CLK3-213ENST00000563842 SCGB1D4Q6XE38 83 aa7.91□□□□□ -1.14
CLK3-213ENST00000563842 HIST3H2BBQ8N257 126 aa7.91□□□□□ -1.14
CLK3-213ENST00000563842 LINC00308Q8TCZ7 52 aa7.91□□□□□ -1.14
CLK3-213ENST00000563842 COPS9Q8WXC6 57 aa7.91□□□□□ -1.14
CLK3-213ENST00000563842 LITAFQ99732 161 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms