RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 KRTAP1-4P0C5Y4 121 aa10.13□□□□□ -0.79
CLK3-210ENST00000563112 RPL13AP40429 203 aaKnown RBP10.13□□□□□ -0.79
CLK3-210ENST00000563112 TMEM170BQ5T4T1 132 aa10.13□□□□□ -0.79
CLK3-210ENST00000563112 IGLV5-37A0A075B6J1 123 aa10.12□□□□□ -0.79
CLK3-210ENST00000563112 GAGE10A6NGK3 116 aa10.12□□□□□ -0.79
CLK3-210ENST00000563112 C11orf86A6NJI1 115 aa10.12□□□□□ -0.79
CLK3-210ENST00000563112 RPL37AP8A6NKH3 93 aa10.12□□□□□ -0.79
CLK3-210ENST00000563112 PCP4L1A6NKN8 68 aa10.12□□□□□ -0.79
CLK3-210ENST00000563112 TSTD3H0UI37 97 aa10.12□□□□□ -0.79
CLK3-210ENST00000563112 BCE1O60756 84 aa10.12□□□□□ -0.79
CLK3-210ENST00000563112 SFTA2Q6UW10 78 aa10.12□□□□□ -0.79
CLK3-210ENST00000563112 CHCHD1Q96BP2 118 aaKnown RBP10.12□□□□□ -0.79
CLK3-210ENST00000563112 CHTOPQ9Y3Y2 248 aaKnown RBP10.12□□□□□ -0.79
CLK3-210ENST00000563112 JOSD1Q15040 202 aaPredicted RBP10.11□□□□□ -0.79
CLK3-210ENST00000563112 ERG28Q9UKR5 140 aa10.11□□□□□ -0.79
CLK3-210ENST00000563112 COX17Q14061 63 aa10.1□□□□□ -0.79
CLK3-210ENST00000563112 ZNF625Q96I27 306 aaPredicted RBP10.09□□□□□ -0.79
CLK3-210ENST00000563112 TRAV12-1A0A0B4J245 112 aa10.08□□□□□ -0.8
CLK3-210ENST00000563112 RPL24P83731 157 aaKnown RBP10.08□□□□□ -0.8
CLK3-210ENST00000563112 IFI27L1Q96BM0 104 aa10.08□□□□□ -0.8
CLK3-210ENST00000563112 PYY3Q5JQD4 70 aa10.07□□□□□ -0.8
CLK3-210ENST00000563112 SND1-IT1Q9HBX3 110 aa10.07□□□□□ -0.8
CLK3-210ENST00000563112 HSBP1O75506 76 aa10.06□□□□□ -0.8
CLK3-210ENST00000563112 UBE2AP49459 152 aa10.06□□□□□ -0.8
CLK3-210ENST00000563112 IGKV2-28A0A075B6P5 120 aa10.04□□□□□ -0.8
CLK3-210ENST00000563112 TMEM223A0PJW6 202 aa10.04□□□□□ -0.8
CLK3-210ENST00000563112 SERF1AO75920 110 aa10.04□□□□□ -0.8
CLK3-210ENST00000563112 IGKV2D-28P01615 120 aa10.04□□□□□ -0.8
CLK3-210ENST00000563112 SCGB1D1O95968 90 aa10.03□□□□□ -0.8
CLK3-210ENST00000563112 VPREB1P12018 145 aa10.03□□□□□ -0.8
CLK3-210ENST00000563112 LINC00158P58513 81 aa10.03□□□□□ -0.8
CLK3-210ENST00000563112 CRYGAP11844 174 aa10.02□□□□□ -0.81
CLK3-210ENST00000563112 FAM19A2Q8N3H0 131 aa10.01□□□□□ -0.81
CLK3-210ENST00000563112 C20orf202A1L168 122 aa10□□□□□ -0.81
CLK3-210ENST00000563112 A0A0U1RRA0 63 aa9.99□□□□□ -0.81
CLK3-210ENST00000563112 FAM19A1Q7Z5A9 133 aa9.99□□□□□ -0.81
CLK3-210ENST00000563112 KRTAP13-1Q8IUC0 172 aa9.99□□□□□ -0.81
CLK3-210ENST00000563112 TMEM126AQ9H061 195 aa9.99□□□□□ -0.81
CLK3-210ENST00000563112 H0Y8G0 127 aa9.98□□□□□ -0.81
CLK3-210ENST00000563112 MEIG1Q5JSS6 88 aa9.98□□□□□ -0.81
CLK3-210ENST00000563112 TYMSOSQ8TAI1 123 aa9.98□□□□□ -0.81
CLK3-210ENST00000563112 RNF213Q63HN8 5207 aa9.97□□□□□ -0.81
CLK3-210ENST00000563112 LINC00587B1AMM8 73 aa9.97□□□□□ -0.81
CLK3-210ENST00000563112 LEPROTL1O95214 131 aa9.97□□□□□ -0.81
CLK3-210ENST00000563112 HERV-K104P63124 156 aa9.97□□□□□ -0.81
CLK3-210ENST00000563112 A0A087X002 238 aa9.96□□□□□ -0.82
CLK3-210ENST00000563112 TMEM238C9JI98 176 aa9.96□□□□□ -0.82
CLK3-210ENST00000563112 PRLHP81277 87 aa9.96□□□□□ -0.82
CLK3-210ENST00000563112 HSPB8Q9UJY1 196 aa9.96□□□□□ -0.82
CLK3-210ENST00000563112 M0R378 163 aa9.95□□□□□ -0.82
CLK3-210ENST00000563112 SMIM13P0DJ93 91 aa9.95□□□□□ -0.82
CLK3-210ENST00000563112 PRR4Q16378 134 aa9.95□□□□□ -0.82
CLK3-210ENST00000563112 Q8NDZ9 215 aa9.95□□□□□ -0.82
CLK3-210ENST00000563112 VAMP8Q9BV40 100 aa9.95□□□□□ -0.82
CLK3-210ENST00000563112 MYMXA0A1B0GTQ4 84 aa9.94□□□□□ -0.82
CLK3-210ENST00000563112 TSPAN13O95857 204 aa9.94□□□□□ -0.82
CLK3-210ENST00000563112 DDTP30046 118 aa9.94□□□□□ -0.82
CLK3-210ENST00000563112 KRTDAPP60985 99 aa9.94□□□□□ -0.82
CLK3-210ENST00000563112 FAM229BQ4G0N7 80 aa9.94□□□□□ -0.82
CLK3-210ENST00000563112 ANAPC11Q9NYG5 84 aa9.94□□□□□ -0.82
CLK3-210ENST00000563112 NDUFA12Q9UI09 145 aa9.94□□□□□ -0.82
CLK3-210ENST00000563112 MAP1LC3CQ9BXW4 147 aa9.93□□□□□ -0.82
CLK3-210ENST00000563112 PLNP26678 52 aa9.92□□□□□ -0.82
CLK3-210ENST00000563112 BOD1L2Q8IYS8 172 aa9.92□□□□□ -0.82
CLK3-210ENST00000563112 MIR7-3HGQ8N6C7 128 aa9.92□□□□□ -0.82
CLK3-210ENST00000563112 IGKV2D-26A0A0A0MRZ7 120 aa9.91□□□□□ -0.82
CLK3-210ENST00000563112 PLEKHB2Q96CS7 222 aa9.91□□□□□ -0.82
CLK3-210ENST00000563112 LEPROTO15243 131 aa9.9□□□□□ -0.82
CLK3-210ENST00000563112 LINC00310P59036 64 aa9.9□□□□□ -0.82
CLK3-210ENST00000563112 HERVK_113P61574 105 aa9.9□□□□□ -0.82
CLK3-210ENST00000563112 LPAP08519 4548 aa9.9□□□□□ -0.83
CLK3-210ENST00000563112 HSBP1L1C9JCN9 74 aa9.89□□□□□ -0.83
CLK3-210ENST00000563112 DPM2O94777 84 aa9.89□□□□□ -0.83
CLK3-210ENST00000563112 KRTAP13-2Q52LG2 175 aa9.89□□□□□ -0.83
CLK3-210ENST00000563112 HIGD2AQ9BW72 106 aa9.89□□□□□ -0.83
CLK3-210ENST00000563112 PET117Q6UWS5 81 aa9.88□□□□□ -0.83
CLK3-210ENST00000563112 PRYO14603 147 aa9.87□□□□□ -0.83
CLK3-210ENST00000563112 NCR3O14931 201 aa9.87□□□□□ -0.83
CLK3-210ENST00000563112 C3orf79P0CE67 100 aa9.87□□□□□ -0.83
CLK3-210ENST00000563112 J3QQQ9 107 aa9.86□□□□□ -0.83
CLK3-210ENST00000563112 IGKCP01834 107 aa9.86□□□□□ -0.83
CLK3-210ENST00000563112 LINC00304Q8N9R0 145 aa9.86□□□□□ -0.83
CLK3-210ENST00000563112 PRO1933Q9H354 126 aa9.86□□□□□ -0.83
CLK3-210ENST00000563112 LGALS3P17931 250 aaKnown RBP9.85□□□□□ -0.83
CLK3-210ENST00000563112 NMUP48645 174 aa9.85□□□□□ -0.83
CLK3-210ENST00000563112 TSPEAR-AS2P59090 65 aa9.85□□□□□ -0.83
CLK3-210ENST00000563112 CTAG1AP78358 180 aa9.85□□□□□ -0.83
CLK3-210ENST00000563112 PMCHL2Q9BQD1 86 aa9.85□□□□□ -0.83
CLK3-210ENST00000563112 MIEN1Q9BRT3 115 aa9.85□□□□□ -0.83
CLK3-210ENST00000563112 KCNQ1DNQ9H478 68 aa9.84□□□□□ -0.83
CLK3-210ENST00000563112 UQCR10Q9UDW1 63 aa9.84□□□□□ -0.83
CLK3-210ENST00000563112 ZNF706Q9Y5V0 76 aaPredicted RBP9.84□□□□□ -0.83
CLK3-210ENST00000563112 ETDCA0A1B0GVM5 59 aa9.83□□□□□ -0.84
CLK3-210ENST00000563112 SYS1-DBNDD2H3BUS1 97 aa9.83□□□□□ -0.84
CLK3-210ENST00000563112 LINC00337Q8N6G1 96 aa9.83□□□□□ -0.84
CLK3-210ENST00000563112 M0R143 59 aa9.82□□□□□ -0.84
CLK3-210ENST00000563112 SPATA45Q537H7 98 aa9.82□□□□□ -0.84
CLK3-210ENST00000563112 DAND5Q8N907 189 aa9.82□□□□□ -0.84
CLK3-210ENST00000563112 PAM16Q9Y3D7 125 aa9.82□□□□□ -0.84
CLK3-210ENST00000563112 LOC107984156A0A0G2JMH3 177 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 133.2 ms