RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 CKS1BP61024 79 aa9.12□□□□□ -0.95
LDLR-213ENST00000560502 RPL24P83731 157 aaKnown RBP9.12□□□□□ -0.95
LDLR-213ENST00000560502 SPAG11BQ08648 103 aa9.11□□□□□ -0.95
LDLR-213ENST00000560502 KIAA0087Q14695 138 aa9.11□□□□□ -0.95
LDLR-213ENST00000560502 MEIG1Q5JSS6 88 aa9.11□□□□□ -0.95
LDLR-213ENST00000560502 SCXQ7RTU7 201 aa9.11□□□□□ -0.95
LDLR-213ENST00000560502 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.1□□□□□ -0.95
LDLR-213ENST00000560502 IGKV2D-24A0A075B6R9 120 aa9.1□□□□□ -0.95
LDLR-213ENST00000560502 FXYD2P54710 66 aa9.1□□□□□ -0.95
LDLR-213ENST00000560502 COX17Q14061 63 aa9.1□□□□□ -0.95
LDLR-213ENST00000560502 FAT3Q8TDW7 4589 aa9.1□□□□□ -0.95
LDLR-213ENST00000560502 A0A1B0GWB2 263 aa9.09□□□□□ -0.95
LDLR-213ENST00000560502 LINC01620Q4KN68 170 aa9.09□□□□□ -0.95
LDLR-213ENST00000560502 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.08□□□□□ -0.96
LDLR-213ENST00000560502 C2orf48Q96LS8 159 aa9.08□□□□□ -0.96
LDLR-213ENST00000560502 GVQW2A0A096LPI5 108 aaPredicted RBP9.07□□□□□ -0.96
LDLR-213ENST00000560502 SMIM13P0DJ93 91 aa9.07□□□□□ -0.96
LDLR-213ENST00000560502 ERG28Q9UKR5 140 aa9.07□□□□□ -0.96
LDLR-213ENST00000560502 ZNF561-AS1K7EIQ3 104 aa9.06□□□□□ -0.96
LDLR-213ENST00000560502 ADAMTSL4-AS1Q5T5F5 129 aa9.06□□□□□ -0.96
LDLR-213ENST00000560502 SERTAD4-AS1Q5TG53 156 aa9.06□□□□□ -0.96
LDLR-213ENST00000560502 NHP2Q9NX24 153 aaKnown RBP9.06□□□□□ -0.96
LDLR-213ENST00000560502 PKHD1L1Q86WI1 4243 aa9.06□□□□□ -0.96
LDLR-213ENST00000560502 A0A0B4J2C4 111 aa9.05□□□□□ -0.96
LDLR-213ENST00000560502 TRBV30A0A0K0K1B3 111 aa9.05□□□□□ -0.96
LDLR-213ENST00000560502 MUSTN1Q8IVN3 82 aa9.05□□□□□ -0.96
LDLR-213ENST00000560502 C15orf56Q8N910 161 aa9.05□□□□□ -0.96
LDLR-213ENST00000560502 CIRBP-AS1Q8TBR5 109 aa9.05□□□□□ -0.96
LDLR-213ENST00000560502 OXTP01178 125 aa9.04□□□□□ -0.96
LDLR-213ENST00000560502 LINC00308Q8TCZ7 52 aa9.04□□□□□ -0.96
LDLR-213ENST00000560502 UBR4Q5T4S7 5183 aa9.03□□□□□ -0.96
LDLR-213ENST00000560502 A4D1N5 150 aa9.03□□□□□ -0.96
LDLR-213ENST00000560502 TAX1BP3O14907 124 aa9.03□□□□□ -0.96
LDLR-213ENST00000560502 LINC00158P58513 81 aa9.03□□□□□ -0.96
LDLR-213ENST00000560502 C2orf82Q6UX34 121 aa9.03□□□□□ -0.96
LDLR-213ENST00000560502 MIR7-3HGQ8N6C7 128 aa9.02□□□□□ -0.97
LDLR-213ENST00000560502 LOC107984156A0A0G2JMH3 177 aa9.01□□□□□ -0.97
LDLR-213ENST00000560502 ARL17AQ8IVW1 177 aa9.01□□□□□ -0.97
LDLR-213ENST00000560502 CAMK2N2Q96S95 79 aa9.01□□□□□ -0.97
LDLR-213ENST00000560502 C9orf118A6NHY6 69 aa9□□□□□ -0.97
LDLR-213ENST00000560502 CFC1BP0CG36 223 aa9□□□□□ -0.97
LDLR-213ENST00000560502 CFC1P0CG37 223 aa9□□□□□ -0.97
LDLR-213ENST00000560502 RNF151Q2KHN1 245 aa9□□□□□ -0.97
LDLR-213ENST00000560502 C14orf177Q52M58 125 aa9□□□□□ -0.97
LDLR-213ENST00000560502 RAB37Q96AX2 223 aa9□□□□□ -0.97
LDLR-213ENST00000560502 USP17L23D6RBM5 183 aa8.99□□□□□ -0.97
LDLR-213ENST00000560502 PFN2P35080 140 aa8.99□□□□□ -0.97
LDLR-213ENST00000560502 HIGD2BQ4VC39 106 aa8.99□□□□□ -0.97
LDLR-213ENST00000560502 UNQ6190/PRO20217Q6UXQ8 127 aa8.99□□□□□ -0.97
LDLR-213ENST00000560502 DAND5Q8N907 189 aa8.99□□□□□ -0.97
LDLR-213ENST00000560502 PRO1854Q9UHT4 67 aa8.99□□□□□ -0.97
LDLR-213ENST00000560502 A0A0U1RRA0 63 aa8.98□□□□□ -0.97
LDLR-213ENST00000560502 K7ERJ3 54 aa8.97□□□□□ -0.97
LDLR-213ENST00000560502 NDUFC2O95298 119 aa8.97□□□□□ -0.97
LDLR-213ENST00000560502 SYCNQ0VAF6 134 aa8.97□□□□□ -0.97
LDLR-213ENST00000560502 C10orf25Q5T742 122 aa8.97□□□□□ -0.97
LDLR-213ENST00000560502 LYRM7Q5U5X0 104 aa8.97□□□□□ -0.97
LDLR-213ENST00000560502 SOSTDC1Q6X4U4 206 aa8.97□□□□□ -0.97
LDLR-213ENST00000560502 C6orf48Q9UBA6 75 aa8.97□□□□□ -0.97
LDLR-213ENST00000560502 PLA2G2DQ9UNK4 145 aa8.97□□□□□ -0.97
LDLR-213ENST00000560502 A0A1B0GV90 55 aa8.96□□□□□ -0.98
LDLR-213ENST00000560502 CARD19Q96LW7 228 aa8.96□□□□□ -0.98
LDLR-213ENST00000560502 SND1-IT1Q9HBX3 110 aa8.96□□□□□ -0.98
LDLR-213ENST00000560502 RPL37AP61513 92 aaKnown RBP8.95□□□□□ -0.98
LDLR-213ENST00000560502 NPC2P61916 151 aa8.95□□□□□ -0.98
LDLR-213ENST00000560502 Q6ZRU5 148 aa8.95□□□□□ -0.98
LDLR-213ENST00000560502 TRAV13-2A0A0B4J235 113 aa8.94□□□□□ -0.98
LDLR-213ENST00000560502 NDUFC2-KCTD14E9PQ53 114 aa8.94□□□□□ -0.98
LDLR-213ENST00000560502 TLX1NBP0CAT3 122 aa8.94□□□□□ -0.98
LDLR-213ENST00000560502 LINC00526Q96FQ7 95 aa8.94□□□□□ -0.98
LDLR-213ENST00000560502 PKIGQ9Y2B9 76 aa8.94□□□□□ -0.98
LDLR-213ENST00000560502 A0A1W2PPM0 123 aa8.93□□□□□ -0.98
LDLR-213ENST00000560502 H3BUT2 72 aa8.93□□□□□ -0.98
LDLR-213ENST00000560502 EIF4EBP3O60516 100 aaPredicted RBP8.93□□□□□ -0.98
LDLR-213ENST00000560502 FABP2P12104 132 aa8.93□□□□□ -0.98
LDLR-213ENST00000560502 TSPAN13O95857 204 aa8.92□□□□□ -0.98
LDLR-213ENST00000560502 CNBPP62633 177 aaKnown RBP8.92□□□□□ -0.98
LDLR-213ENST00000560502 C9orf116Q5BN46 136 aaPredicted RBP8.92□□□□□ -0.98
LDLR-213ENST00000560502 C9orf163Q8N9P6 203 aa8.91□□□□□ -0.98
LDLR-213ENST00000560502 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.91□□□□□ -0.98
LDLR-213ENST00000560502 PANO1I0J062 215 aa8.9□□□□□ -0.98
LDLR-213ENST00000560502 MT1HL1P0DM35 61 aa8.9□□□□□ -0.98
LDLR-213ENST00000560502 RPL13AP40429 203 aaKnown RBP8.9□□□□□ -0.98
LDLR-213ENST00000560502 VAMP3Q15836 100 aa8.9□□□□□ -0.98
LDLR-213ENST00000560502 GTF2H5Q6ZYL4 71 aa8.9□□□□□ -0.98
LDLR-213ENST00000560502 TRBV10-2A0A0K0K1G8 114 aa8.89□□□□□ -0.99
LDLR-213ENST00000560502 Q1RN00 199 aa8.89□□□□□ -0.99
LDLR-213ENST00000560502 IGKV2-28A0A075B6P5 120 aa8.88□□□□□ -0.99
LDLR-213ENST00000560502 IGKV2D-28P01615 120 aa8.88□□□□□ -0.99
LDLR-213ENST00000560502 TRBV20-1A0A075B6N2 111 aa8.87□□□□□ -0.99
LDLR-213ENST00000560502 LOC107984640A0A0U1RRK4 108 aa8.87□□□□□ -0.99
LDLR-213ENST00000560502 K7EP34 96 aa8.87□□□□□ -0.99
LDLR-213ENST00000560502 COX6CP09669 75 aa8.87□□□□□ -0.99
LDLR-213ENST00000560502 SDIM1Q6ZPB5 146 aa8.87□□□□□ -0.99
LDLR-213ENST00000560502 SLPIP03973 132 aa8.86□□□□□ -0.99
LDLR-213ENST00000560502 PSMB2P49721 201 aa8.86□□□□□ -0.99
LDLR-213ENST00000560502 CBY1Q9Y3M2 126 aa8.86□□□□□ -0.99
LDLR-213ENST00000560502 SPCS1Q9Y6A9 102 aa8.86□□□□□ -0.99
LDLR-213ENST00000560502 GAGE10A6NGK3 116 aa8.85□□□□□ -0.99
LDLR-213ENST00000560502 UBE2V1Q13404 147 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 793 ms