RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 MEIG1Q5JSS6 88 aa8.07□□□□□ -1.12
NEDD8-208ENST00000560427 HIST1H2BLQ99880 126 aa8.07□□□□□ -1.12
NEDD8-208ENST00000560427 SND1-IT1Q9HBX3 110 aa8.07□□□□□ -1.12
NEDD8-208ENST00000560427 C22orf24Q9Y442 160 aa8.07□□□□□ -1.12
NEDD8-208ENST00000560427 LINC00158P58513 81 aa8.06□□□□□ -1.12
NEDD8-208ENST00000560427 UBE2BP63146 152 aa8.06□□□□□ -1.12
NEDD8-208ENST00000560427 MRPL55Q7Z7F7 128 aaKnown RBP8.06□□□□□ -1.12
NEDD8-208ENST00000560427 RPL24P83731 157 aaKnown RBP8.05□□□□□ -1.12
NEDD8-208ENST00000560427 NKAPP1Q8N9T2 125 aa8.05□□□□□ -1.12
NEDD8-208ENST00000560427 PSORS1C2Q9UIG4 136 aa8.05□□□□□ -1.12
NEDD8-208ENST00000560427 SMIM13P0DJ93 91 aa8.04□□□□□ -1.12
NEDD8-208ENST00000560427 HNRNPA3P51991 378 aaKnown RBP8.03□□□□□ -1.12
NEDD8-208ENST00000560427 SNRPEP62304 92 aaKnown RBP8.03□□□□□ -1.12
NEDD8-208ENST00000560427 C5orf52A6NGY3 159 aa8.02□□□□□ -1.13
NEDD8-208ENST00000560427 VPREB1P12018 145 aa8.02□□□□□ -1.13
NEDD8-208ENST00000560427 C1orf137Q5JT78 98 aa8.02□□□□□ -1.13
NEDD8-208ENST00000560427 MIR7-3HGQ8N6C7 128 aa8.02□□□□□ -1.13
NEDD8-208ENST00000560427 A0A0U1RRA0 63 aa8.01□□□□□ -1.13
NEDD8-208ENST00000560427 SPINK6Q6UWN8 80 aa8.01□□□□□ -1.13
NEDD8-208ENST00000560427 LOC107984156A0A0G2JMH3 177 aa8□□□□□ -1.13
NEDD8-208ENST00000560427 OXTP01178 125 aa8□□□□□ -1.13
NEDD8-208ENST00000560427 KRTAP11-1Q8IUC1 163 aa8□□□□□ -1.13
NEDD8-208ENST00000560427 ARL17AQ8IVW1 177 aa8□□□□□ -1.13
NEDD8-208ENST00000560427 LINC00167Q96N53 147 aa8□□□□□ -1.13
NEDD8-208ENST00000560427 FLG2Q5D862 2391 aaPredicted RBP8□□□□□ -1.13
NEDD8-208ENST00000560427 A0A0J9YXY3 114 aa7.99□□□□□ -1.13
NEDD8-208ENST00000560427 KRTAP29-1A8MX34 341 aaPredicted RBP7.99□□□□□ -1.13
NEDD8-208ENST00000560427 TIMM17BO60830 172 aa7.99□□□□□ -1.13
NEDD8-208ENST00000560427 IGLV7-43P04211 117 aa7.99□□□□□ -1.13
NEDD8-208ENST00000560427 SRSF9Q13242 221 aaKnown RBP eCLIP7.99□□□□□ -1.13
NEDD8-208ENST00000560427 MYCBP2O75592 4640 aa7.98□□□□□ -1.13
NEDD8-208ENST00000560427 IGKV2D-26A0A0A0MRZ7 120 aa7.98□□□□□ -1.13
NEDD8-208ENST00000560427 ZNF815PA8K554 130 aa7.98□□□□□ -1.13
NEDD8-208ENST00000560427 BOD1L2Q8IYS8 172 aa7.98□□□□□ -1.13
NEDD8-208ENST00000560427 MIEN1Q9BRT3 115 aa7.98□□□□□ -1.13
NEDD8-208ENST00000560427 ATOH7Q8N100 152 aa7.97□□□□□ -1.13
NEDD8-208ENST00000560427 GAGE10A6NGK3 116 aa7.96□□□□□ -1.14
NEDD8-208ENST00000560427 M0R378 163 aa7.96□□□□□ -1.14
NEDD8-208ENST00000560427 ANKRD39Q53RE8 183 aa7.96□□□□□ -1.14
NEDD8-208ENST00000560427 REG3GQ6UW15 175 aa7.96□□□□□ -1.14
NEDD8-208ENST00000560427 Q8NDZ9 215 aa7.96□□□□□ -1.14
NEDD8-208ENST00000560427 DIRC1Q969H9 104 aa7.96□□□□□ -1.14
NEDD8-208ENST00000560427 PKHD1L1Q86WI1 4243 aa7.95□□□□□ -1.14
NEDD8-208ENST00000560427 IGLV1-50A0A075B6I6 118 aa7.95□□□□□ -1.14
NEDD8-208ENST00000560427 RPL37AP8A6NKH3 93 aa7.95□□□□□ -1.14
NEDD8-208ENST00000560427 HSBP1L1C9JCN9 74 aa7.95□□□□□ -1.14
NEDD8-208ENST00000560427 BCE1O60756 84 aa7.95□□□□□ -1.14
NEDD8-208ENST00000560427 DAND5Q8N907 189 aa7.95□□□□□ -1.14
NEDD8-208ENST00000560427 IGKV2-28A0A075B6P5 120 aa7.94□□□□□ -1.14
NEDD8-208ENST00000560427 J3QL48 77 aa7.94□□□□□ -1.14
NEDD8-208ENST00000560427 NDUFC2O95298 119 aa7.94□□□□□ -1.14
NEDD8-208ENST00000560427 IGKV2D-28P01615 120 aa7.94□□□□□ -1.14
NEDD8-208ENST00000560427 LITAFQ99732 161 aa7.94□□□□□ -1.14
NEDD8-208ENST00000560427 DMBT1Q9UGM3 2413 aaPredicted RBP7.93□□□□□ -1.14
NEDD8-208ENST00000560427 TRBV10-2A0A0K0K1G8 114 aa7.93□□□□□ -1.14
NEDD8-208ENST00000560427 TMEM238C9JI98 176 aa7.93□□□□□ -1.14
NEDD8-208ENST00000560427 ZNF861PO60384 105 aa7.93□□□□□ -1.14
NEDD8-208ENST00000560427 RPL28P46779 137 aaKnown RBP7.93□□□□□ -1.14
NEDD8-208ENST00000560427 SCGB1D4Q6XE38 83 aa7.93□□□□□ -1.14
NEDD8-208ENST00000560427 SPANXB1Q9NS25 103 aaPredicted RBP7.93□□□□□ -1.14
NEDD8-208ENST00000560427 H0Y9J4 135 aa7.92□□□□□ -1.14
NEDD8-208ENST00000560427 SCGB1D1O95968 90 aa7.92□□□□□ -1.14
NEDD8-208ENST00000560427 ADAMTSL4-AS1Q5T5F5 129 aa7.92□□□□□ -1.14
NEDD8-208ENST00000560427 COPS9Q8WXC6 57 aa7.92□□□□□ -1.14
NEDD8-208ENST00000560427 TTTY13Q9BZ97 58 aa7.92□□□□□ -1.14
NEDD8-208ENST00000560427 S100A12P80511 92 aa7.91□□□□□ -1.14
NEDD8-208ENST00000560427 Q6ZVH6 145 aa7.91□□□□□ -1.14
NEDD8-208ENST00000560427 PPDPFQ9H3Y8 114 aa7.91□□□□□ -1.14
NEDD8-208ENST00000560427 PRYO14603 147 aa7.9□□□□□ -1.14
NEDD8-208ENST00000560427 NCR3O14931 201 aa7.9□□□□□ -1.14
NEDD8-208ENST00000560427 SOSTDC1Q6X4U4 206 aa7.9□□□□□ -1.14
NEDD8-208ENST00000560427 LINC00308Q8TCZ7 52 aa7.9□□□□□ -1.14
NEDD8-208ENST00000560427 LINC01600Q96MT4 127 aa7.9□□□□□ -1.14
NEDD8-208ENST00000560427 SPANXDQ9BXN6 97 aa7.9□□□□□ -1.14
NEDD8-208ENST00000560427 TMEM126AQ9H061 195 aa7.9□□□□□ -1.14
NEDD8-208ENST00000560427 SPANXCQ9NY87 97 aa7.9□□□□□ -1.14
NEDD8-208ENST00000560427 UBE2AP49459 152 aa7.89□□□□□ -1.15
NEDD8-208ENST00000560427 KRTAP13-1Q8IUC0 172 aa7.89□□□□□ -1.15
NEDD8-208ENST00000560427 PCP2Q8IVA1 136 aa7.89□□□□□ -1.15
NEDD8-208ENST00000560427 KCNQ1DNQ9H478 68 aa7.89□□□□□ -1.15
NEDD8-208ENST00000560427 IFITM1P13164 125 aa7.88□□□□□ -1.15
NEDD8-208ENST00000560427 CBY1Q9Y3M2 126 aa7.88□□□□□ -1.15
NEDD8-208ENST00000560427 TRBV10-3A0A0K0K1G6 114 aa7.87□□□□□ -1.15
NEDD8-208ENST00000560427 DDTP30046 118 aa7.87□□□□□ -1.15
NEDD8-208ENST00000560427 NPC2P61916 151 aa7.87□□□□□ -1.15
NEDD8-208ENST00000560427 LRP1Q07954 4544 aaKnown RBP7.87□□□□□ -1.15
NEDD8-208ENST00000560427 FAT3Q8TDW7 4589 aa7.86□□□□□ -1.15
NEDD8-208ENST00000560427 EIF4EBP3O60516 100 aaPredicted RBP7.86□□□□□ -1.15
NEDD8-208ENST00000560427 IGLV6-57P01721 117 aa7.86□□□□□ -1.15
NEDD8-208ENST00000560427 SPRR1AP35321 89 aa7.86□□□□□ -1.15
NEDD8-208ENST00000560427 JOSD1Q15040 202 aaPredicted RBP7.86□□□□□ -1.15
NEDD8-208ENST00000560427 S100A7L2Q5SY68 101 aa7.86□□□□□ -1.15
NEDD8-208ENST00000560427 LINC00337Q8N6G1 96 aa7.86□□□□□ -1.15
NEDD8-208ENST00000560427 FAM19A1Q7Z5A9 133 aa7.85□□□□□ -1.15
NEDD8-208ENST00000560427 LINC00518Q8N0U6 118 aa7.85□□□□□ -1.15
NEDD8-208ENST00000560427 TMA7Q9Y2S6 64 aaKnown RBP7.85□□□□□ -1.15
NEDD8-208ENST00000560427 MT1HL1P0DM35 61 aa7.84□□□□□ -1.15
NEDD8-208ENST00000560427 DLEU1O43261 78 aa7.83□□□□□ -1.16
NEDD8-208ENST00000560427 COX8AP10176 69 aa7.83□□□□□ -1.16
NEDD8-208ENST00000560427 PRLHP81277 87 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms