RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 TIMM17BO60830 172 aa5.96□□□□□ -1.46
LDLR-211ENST00000560173 INAFM2P0DMQ5 153 aa5.96□□□□□ -1.46
LDLR-211ENST00000560173 CAMK2N2Q96S95 79 aa5.96□□□□□ -1.46
LDLR-211ENST00000560173 TTTY13Q9BZ97 58 aa5.96□□□□□ -1.46
LDLR-211ENST00000560173 NDUFA12Q9UI09 145 aa5.96□□□□□ -1.46
LDLR-211ENST00000560173 FLG2Q5D862 2391 aaPredicted RBP5.96□□□□□ -1.46
LDLR-211ENST00000560173 A0A096LNI7 61 aa5.95□□□□□ -1.46
LDLR-211ENST00000560173 A0A0J9YXY3 114 aa5.95□□□□□ -1.46
LDLR-211ENST00000560173 F8WDY8 70 aa5.95□□□□□ -1.46
LDLR-211ENST00000560173 NDUFA1O15239 70 aa5.95□□□□□ -1.46
LDLR-211ENST00000560173 SPINK8P0C7L1 97 aa5.95□□□□□ -1.46
LDLR-211ENST00000560173 SMIM13P0DJ93 91 aa5.95□□□□□ -1.46
LDLR-211ENST00000560173 KIAA0087Q14695 138 aa5.95□□□□□ -1.46
LDLR-211ENST00000560173 PKIGQ9Y2B9 76 aa5.95□□□□□ -1.46
LDLR-211ENST00000560173 A0A087WYN8 130 aa5.94□□□□□ -1.46
LDLR-211ENST00000560173 IGKV2-24A0A0C4DH68 120 aa5.94□□□□□ -1.46
LDLR-211ENST00000560173 SMIM1B2RUZ4 78 aa5.94□□□□□ -1.46
LDLR-211ENST00000560173 TSPEAR-AS2P59090 65 aa5.94□□□□□ -1.46
LDLR-211ENST00000560173 RPL24P83731 157 aaKnown RBP5.94□□□□□ -1.46
LDLR-211ENST00000560173 RNF151Q2KHN1 245 aa5.94□□□□□ -1.46
LDLR-211ENST00000560173 PLAC8Q9NZF1 115 aa5.94□□□□□ -1.46
LDLR-211ENST00000560173 LOC107984640A0A0U1RRK4 108 aa5.93□□□□□ -1.46
LDLR-211ENST00000560173 A0A1B0GV90 55 aa5.93□□□□□ -1.46
LDLR-211ENST00000560173 IFITM1P13164 125 aa5.93□□□□□ -1.46
LDLR-211ENST00000560173 C10orf25Q5T742 122 aa5.93□□□□□ -1.46
LDLR-211ENST00000560173 PLA2G1BP04054 148 aaKnown RBP5.92□□□□□ -1.46
LDLR-211ENST00000560173 CXCL5P42830 114 aa5.92□□□□□ -1.46
LDLR-211ENST00000560173 KRTAP10-4P60372 401 aaPredicted RBP5.92□□□□□ -1.46
LDLR-211ENST00000560173 UNQ6190/PRO20217Q6UXQ8 127 aa5.92□□□□□ -1.46
LDLR-211ENST00000560173 COX7B2Q8TF08 81 aa5.92□□□□□ -1.46
LDLR-211ENST00000560173 DPH3Q96FX2 82 aa5.92□□□□□ -1.46
LDLR-211ENST00000560173 SPANXDQ9BXN6 97 aa5.92□□□□□ -1.46
LDLR-211ENST00000560173 PPDPFQ9H3Y8 114 aa5.92□□□□□ -1.46
LDLR-211ENST00000560173 SPANXCQ9NY87 97 aa5.92□□□□□ -1.46
LDLR-211ENST00000560173 LINC00474Q9P2X8 69 aa5.92□□□□□ -1.46
LDLR-211ENST00000560173 C6orf48Q9UBA6 75 aa5.92□□□□□ -1.46
LDLR-211ENST00000560173 A0A1B0GWB2 263 aa5.91□□□□□ -1.46
LDLR-211ENST00000560173 C9orf118A6NHY6 69 aa5.91□□□□□ -1.46
LDLR-211ENST00000560173 TAX1BP3O14907 124 aa5.91□□□□□ -1.46
LDLR-211ENST00000560173 PRSS2P07478 247 aa5.91□□□□□ -1.46
LDLR-211ENST00000560173 FXYD2P54710 66 aa5.91□□□□□ -1.46
LDLR-211ENST00000560173 C2orf82Q6UX34 121 aa5.91□□□□□ -1.46
LDLR-211ENST00000560173 Q8IZM0 81 aa5.91□□□□□ -1.46
LDLR-211ENST00000560173 NHP2Q9NX24 153 aaKnown RBP5.91□□□□□ -1.46
LDLR-211ENST00000560173 TRBV30A0A0K0K1B3 111 aa5.9□□□□□ -1.46
LDLR-211ENST00000560173 RPL18AQ02543 176 aaKnown RBP5.9□□□□□ -1.46
LDLR-211ENST00000560173 GAGE2BQ13066 116 aa5.9□□□□□ -1.46
LDLR-211ENST00000560173 LYRM7Q5U5X0 104 aa5.9□□□□□ -1.46
LDLR-211ENST00000560173 TOMM7Q9P0U1 55 aa5.9□□□□□ -1.46
LDLR-211ENST00000560173 PKHD1L1Q86WI1 4243 aa5.89□□□□□ -1.47
LDLR-211ENST00000560173 TLX1NBP0CAT3 122 aa5.89□□□□□ -1.47
LDLR-211ENST00000560173 RPL37AP61513 92 aaKnown RBP5.89□□□□□ -1.47
LDLR-211ENST00000560173 VAMP3Q15836 100 aa5.89□□□□□ -1.47
LDLR-211ENST00000560173 C6orf226Q5I0X4 101 aa5.89□□□□□ -1.47
LDLR-211ENST00000560173 MEIG1Q5JSS6 88 aa5.89□□□□□ -1.47
LDLR-211ENST00000560173 GTF2H5Q6ZYL4 71 aa5.89□□□□□ -1.47
LDLR-211ENST00000560173 ZNF625Q96I27 306 aaPredicted RBP5.89□□□□□ -1.47
LDLR-211ENST00000560173 FABP2P12104 132 aa5.88□□□□□ -1.47
LDLR-211ENST00000560173 CKS1BP61024 79 aa5.88□□□□□ -1.47
LDLR-211ENST00000560173 Q6ZRP5 223 aa5.88□□□□□ -1.47
LDLR-211ENST00000560173 A0A0B4J2C4 111 aa5.87□□□□□ -1.47
LDLR-211ENST00000560173 C9orf116Q5BN46 136 aaPredicted RBP5.87□□□□□ -1.47
LDLR-211ENST00000560173 RAB37Q96AX2 223 aa5.87□□□□□ -1.47
LDLR-211ENST00000560173 LITAFQ99732 161 aa5.87□□□□□ -1.47
LDLR-211ENST00000560173 A0A1W2PNN7 141 aa5.86□□□□□ -1.47
LDLR-211ENST00000560173 NDUFC2-KCTD14E9PQ53 114 aa5.86□□□□□ -1.47
LDLR-211ENST00000560173 H3BUT2 72 aa5.86□□□□□ -1.47
LDLR-211ENST00000560173 UBE2V1Q13404 147 aa5.86□□□□□ -1.47
LDLR-211ENST00000560173 COX17Q14061 63 aa5.86□□□□□ -1.47
LDLR-211ENST00000560173 MUSTN1Q8IVN3 82 aa5.86□□□□□ -1.47
LDLR-211ENST00000560173 C7orf33Q8WU49 177 aa5.86□□□□□ -1.47
LDLR-211ENST00000560173 PRO1854Q9UHT4 67 aa5.86□□□□□ -1.47
LDLR-211ENST00000560173 A0A1W2PPM0 123 aa5.85□□□□□ -1.47
LDLR-211ENST00000560173 A4D1N5 150 aa5.85□□□□□ -1.47
LDLR-211ENST00000560173 GAGE10A6NGK3 116 aa5.85□□□□□ -1.47
LDLR-211ENST00000560173 GAGE2EQ4V326 116 aa5.85□□□□□ -1.47
LDLR-211ENST00000560173 GAGE2DQ9UEU5 116 aa5.85□□□□□ -1.47
LDLR-211ENST00000560173 LRP1Q07954 4544 aaKnown RBP5.84□□□□□ -1.47
LDLR-211ENST00000560173 FAM168BA1KXE4 195 aa5.84□□□□□ -1.47
LDLR-211ENST00000560173 J3QL48 77 aa5.84□□□□□ -1.47
LDLR-211ENST00000560173 CFC1BP0CG36 223 aa5.84□□□□□ -1.47
LDLR-211ENST00000560173 CFC1P0CG37 223 aa5.84□□□□□ -1.47
LDLR-211ENST00000560173 C9orf129Q5T035 196 aaKnown RBP5.84□□□□□ -1.47
LDLR-211ENST00000560173 ERG28Q9UKR5 140 aa5.84□□□□□ -1.47
LDLR-211ENST00000560173 FAT3Q8TDW7 4589 aa5.84□□□□□ -1.48
LDLR-211ENST00000560173 HMCN2Q8NDA2 5059 aa5.83□□□□□ -1.48
LDLR-211ENST00000560173 K7ERJ3 54 aa5.83□□□□□ -1.48
LDLR-211ENST00000560173 LINC00158P58513 81 aa5.83□□□□□ -1.48
LDLR-211ENST00000560173 PRR3P79522 188 aaKnown RBP5.83□□□□□ -1.48
LDLR-211ENST00000560173 ADAMTSL4-AS1Q5T5F5 129 aa5.83□□□□□ -1.48
LDLR-211ENST00000560173 KRTAP7-1Q8IUC3 87 aa5.83□□□□□ -1.48
LDLR-211ENST00000560173 LINC00308Q8TCZ7 52 aa5.83□□□□□ -1.48
LDLR-211ENST00000560173 TRBV20-1A0A075B6N2 111 aa5.82□□□□□ -1.48
LDLR-211ENST00000560173 K7EP34 96 aa5.82□□□□□ -1.48
LDLR-211ENST00000560173 COX6CP09669 75 aa5.82□□□□□ -1.48
LDLR-211ENST00000560173 PHF5AQ7RTV0 110 aaKnown RBP5.82□□□□□ -1.48
LDLR-211ENST00000560173 FAM19A5Q7Z5A7 132 aaPredicted RBP5.82□□□□□ -1.48
LDLR-211ENST00000560173 SPCS1Q9Y6A9 102 aa5.82□□□□□ -1.48
LDLR-211ENST00000560173 TRAV13-2A0A0B4J235 113 aa5.81□□□□□ -1.48
LDLR-211ENST00000560173 XAGE1AQ9HD64 81 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms