RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 TSPAN13O95857 204 aa7.45□□□□□ -1.22
SMAD3-208ENST00000558827 LPAP08519 4548 aa7.45□□□□□ -1.22
SMAD3-208ENST00000558827 TRAV12-1A0A0B4J245 112 aa7.44□□□□□ -1.22
SMAD3-208ENST00000558827 SERF1AO75920 110 aa7.44□□□□□ -1.22
SMAD3-208ENST00000558827 FABP4P15090 132 aa7.44□□□□□ -1.22
SMAD3-208ENST00000558827 LINC00310P59036 64 aa7.44□□□□□ -1.22
SMAD3-208ENST00000558827 A0A087X002 238 aa7.43□□□□□ -1.22
SMAD3-208ENST00000558827 SMIM13P0DJ93 91 aa7.43□□□□□ -1.22
SMAD3-208ENST00000558827 PRLHP81277 87 aa7.43□□□□□ -1.22
SMAD3-208ENST00000558827 FAM19A1Q7Z5A9 133 aa7.43□□□□□ -1.22
SMAD3-208ENST00000558827 PMCHL2Q9BQD1 86 aa7.43□□□□□ -1.22
SMAD3-208ENST00000558827 HIST1H2BKO60814 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST1H2BJP06899 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST1H2BOP23527 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST1H2BBP33778 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST1H2BDP58876 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST1H2BCP62807 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 RPL24P83731 157 aaKnown RBP7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST2H2BEQ16778 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 MEIG1Q5JSS6 88 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST1H2BHQ93079 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST1H2BNQ99877 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 HIST1H2BMQ99879 126 aa7.42□□□□□ -1.22
SMAD3-208ENST00000558827 LEPROTL1O95214 131 aa7.41□□□□□ -1.22
SMAD3-208ENST00000558827 COX17Q14061 63 aa7.41□□□□□ -1.22
SMAD3-208ENST00000558827 RNF213Q63HN8 5207 aa7.4□□□□□ -1.22
SMAD3-208ENST00000558827 RPL13AP40429 203 aaKnown RBP7.4□□□□□ -1.22
SMAD3-208ENST00000558827 PRR4Q16378 134 aa7.4□□□□□ -1.22
SMAD3-208ENST00000558827 KRTAP13-1Q8IUC0 172 aa7.4□□□□□ -1.22
SMAD3-208ENST00000558827 TMEM126AQ9H061 195 aa7.4□□□□□ -1.22
SMAD3-208ENST00000558827 M0R378 163 aa7.39□□□□□ -1.23
SMAD3-208ENST00000558827 NCR3O14931 201 aa7.39□□□□□ -1.23
SMAD3-208ENST00000558827 CRYGAP11844 174 aa7.39□□□□□ -1.23
SMAD3-208ENST00000558827 TSPEAR-AS2P59090 65 aa7.39□□□□□ -1.23
SMAD3-208ENST00000558827 MIR7-3HGQ8N6C7 128 aa7.39□□□□□ -1.23
SMAD3-208ENST00000558827 TYMSOSQ8TAI1 123 aa7.39□□□□□ -1.23
SMAD3-208ENST00000558827 NDUFA12Q9UI09 145 aa7.39□□□□□ -1.23
SMAD3-208ENST00000558827 BOD1L2Q8IYS8 172 aa7.38□□□□□ -1.23
SMAD3-208ENST00000558827 HSPB8Q9UJY1 196 aa7.38□□□□□ -1.23
SMAD3-208ENST00000558827 KRTAP13-2Q52LG2 175 aa7.37□□□□□ -1.23
SMAD3-208ENST00000558827 SFTA2Q6UW10 78 aa7.37□□□□□ -1.23
SMAD3-208ENST00000558827 DAND5Q8N907 189 aa7.37□□□□□ -1.23
SMAD3-208ENST00000558827 HIGD2AQ9BW72 106 aa7.36□□□□□ -1.23
SMAD3-208ENST00000558827 MYMXA0A1B0GTQ4 84 aa7.35□□□□□ -1.23
SMAD3-208ENST00000558827 LEPROTO15243 131 aa7.35□□□□□ -1.23
SMAD3-208ENST00000558827 DPM2O94777 84 aa7.34□□□□□ -1.23
SMAD3-208ENST00000558827 S100A6P06703 90 aa7.34□□□□□ -1.23
SMAD3-208ENST00000558827 COA6Q5JTJ3 125 aaKnown RBP7.34□□□□□ -1.23
SMAD3-208ENST00000558827 HERV-K104P63124 156 aa7.33□□□□□ -1.24
SMAD3-208ENST00000558827 PLEKHB2Q96CS7 222 aa7.33□□□□□ -1.24
SMAD3-208ENST00000558827 MAP1LC3CQ9BXW4 147 aa7.33□□□□□ -1.24
SMAD3-208ENST00000558827 IGKV2D-26A0A0A0MRZ7 120 aa7.32□□□□□ -1.24
SMAD3-208ENST00000558827 J3QQQ9 107 aa7.32□□□□□ -1.24
SMAD3-208ENST00000558827 IGKCP01834 107 aa7.32□□□□□ -1.24
SMAD3-208ENST00000558827 PLNP26678 52 aa7.32□□□□□ -1.24
SMAD3-208ENST00000558827 NPC2P61916 151 aa7.32□□□□□ -1.24
SMAD3-208ENST00000558827 C3orf22Q8N5N4 141 aa7.32□□□□□ -1.24
SMAD3-208ENST00000558827 RETNLBQ9BQ08 111 aa7.32□□□□□ -1.24
SMAD3-208ENST00000558827 TRBV10-3A0A0K0K1G6 114 aa7.31□□□□□ -1.24
SMAD3-208ENST00000558827 LGALS3P17931 250 aaKnown RBP7.31□□□□□ -1.24
SMAD3-208ENST00000558827 HERVK_113P61574 105 aa7.31□□□□□ -1.24
SMAD3-208ENST00000558827 S100A2P29034 98 aa7.3□□□□□ -1.24
SMAD3-208ENST00000558827 PPDPFQ9H3Y8 114 aa7.3□□□□□ -1.24
SMAD3-208ENST00000558827 LINC00587B1AMM8 73 aa7.29□□□□□ -1.24
SMAD3-208ENST00000558827 FAM229BQ4G0N7 80 aa7.29□□□□□ -1.24
SMAD3-208ENST00000558827 LINC00304Q8N9R0 145 aa7.29□□□□□ -1.24
SMAD3-208ENST00000558827 SMCR5Q8TEV8 140 aa7.29□□□□□ -1.24
SMAD3-208ENST00000558827 ETDCA0A1B0GVM5 59 aa7.28□□□□□ -1.24
SMAD3-208ENST00000558827 PRYO14603 147 aa7.28□□□□□ -1.24
SMAD3-208ENST00000558827 SYS1-DBNDD2H3BUS1 97 aa7.27□□□□□ -1.25
SMAD3-208ENST00000558827 EIF4EBP3O60516 100 aaPredicted RBP7.27□□□□□ -1.25
SMAD3-208ENST00000558827 ADAMTSL4-AS1Q5T5F5 129 aa7.27□□□□□ -1.25
SMAD3-208ENST00000558827 SPRR4Q96PI1 79 aa7.27□□□□□ -1.25
SMAD3-208ENST00000558827 KCNQ1DNQ9H478 68 aa7.27□□□□□ -1.25
SMAD3-208ENST00000558827 C20orf202A1L168 122 aa7.26□□□□□ -1.25
SMAD3-208ENST00000558827 KRTDAPP60985 99 aa7.26□□□□□ -1.25
SMAD3-208ENST00000558827 SOSTDC1Q6X4U4 206 aa7.26□□□□□ -1.25
SMAD3-208ENST00000558827 A0A0J9YXY3 114 aa7.25□□□□□ -1.25
SMAD3-208ENST00000558827 ERC2-IT1O76042 136 aa7.25□□□□□ -1.25
SMAD3-208ENST00000558827 DDTP30046 118 aa7.25□□□□□ -1.25
SMAD3-208ENST00000558827 SPRR1AP35321 89 aa7.25□□□□□ -1.25
SMAD3-208ENST00000558827 PET117Q6UWS5 81 aa7.25□□□□□ -1.25
SMAD3-208ENST00000558827 HIST3H2BBQ8N257 126 aa7.25□□□□□ -1.25
SMAD3-208ENST00000558827 MIEN1Q9BRT3 115 aa7.25□□□□□ -1.25
SMAD3-208ENST00000558827 KRTAP4-16G5E9R7 235 aaPredicted RBP7.24□□□□□ -1.25
SMAD3-208ENST00000558827 C3orf79P0CE67 100 aa7.24□□□□□ -1.25
SMAD3-208ENST00000558827 NMUP48645 174 aa7.24□□□□□ -1.25
SMAD3-208ENST00000558827 SNRPEP62304 92 aaKnown RBP7.24□□□□□ -1.25
SMAD3-208ENST00000558827 LINC00337Q8N6G1 96 aa7.24□□□□□ -1.25
SMAD3-208ENST00000558827 TTTY13Q9BZ97 58 aa7.24□□□□□ -1.25
SMAD3-208ENST00000558827 B5MCH6 92 aa7.23□□□□□ -1.25
SMAD3-208ENST00000558827 E9PLD3 99 aa7.23□□□□□ -1.25
SMAD3-208ENST00000558827 S100A7L2Q5SY68 101 aa7.23□□□□□ -1.25
SMAD3-208ENST00000558827 GAGE2AQ6NT46 116 aa7.23□□□□□ -1.25
SMAD3-208ENST00000558827 AKR1D1P51857 326 aa7.22□□□□□ -1.25
SMAD3-208ENST00000558827 LINC01545Q5VT33 79 aa7.22□□□□□ -1.25
SMAD3-208ENST00000558827 HIST1H2BLQ99880 126 aa7.22□□□□□ -1.25
SMAD3-208ENST00000558827 LOC107984156A0A0G2JMH3 177 aa7.21□□□□□ -1.26
SMAD3-208ENST00000558827 S100A12P80511 92 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 172.2 ms