RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CHCHD10Q8WYQ3 142 aaPredicted RBP8.64□□□□□ -1.03
SHMT2-229ENST00000557348 KLK5Q9Y337 293 aaPredicted RBP8.64□□□□□ -1.03
SHMT2-229ENST00000557348 TRRAPQ9Y4A5 3859 aa8.64□□□□□ -1.03
SHMT2-229ENST00000557348 IBA57-AS1B1ANH7 110 aa8.63□□□□□ -1.03
SHMT2-229ENST00000557348 NDUFC2O95298 119 aa8.63□□□□□ -1.03
SHMT2-229ENST00000557348 NANOS2P60321 138 aaKnown RBP8.63□□□□□ -1.03
SHMT2-229ENST00000557348 C6orf226Q5I0X4 101 aa8.63□□□□□ -1.03
SHMT2-229ENST00000557348 TOMM7Q9P0U1 55 aa8.63□□□□□ -1.03
SHMT2-229ENST00000557348 FAM19A5Q7Z5A7 132 aaPredicted RBP8.62□□□□□ -1.03
SHMT2-229ENST00000557348 C22orf24Q9Y442 160 aa8.62□□□□□ -1.03
SHMT2-229ENST00000557348 JMJD7-PLA2G4BH0Y9G9 81 aa8.62□□□□□ -1.03
SHMT2-229ENST00000557348 hADV29S1A0JD25 119 aa8.61□□□□□ -1.03
SHMT2-229ENST00000557348 NPC2P61916 151 aa8.61□□□□□ -1.03
SHMT2-229ENST00000557348 CLPSL2Q6UWE3 100 aa8.61□□□□□ -1.03
SHMT2-229ENST00000557348 NBEAL2Q6ZNJ1 2754 aa8.6□□□□□ -1.03
SHMT2-229ENST00000557348 SOSTDC1Q6X4U4 206 aa8.6□□□□□ -1.03
SHMT2-229ENST00000557348 MUC7Q8TAX7 377 aa8.6□□□□□ -1.03
SHMT2-229ENST00000557348 MGAM2Q2M2H8 2515 aa8.6□□□□□ -1.03
SHMT2-229ENST00000557348 DPH3Q96FX2 82 aa8.59□□□□□ -1.03
SHMT2-229ENST00000557348 KLK12Q9UKR0 248 aa8.59□□□□□ -1.03
SHMT2-229ENST00000557348 PRB2P02812 416 aaPredicted RBP8.59□□□□□ -1.03
SHMT2-229ENST00000557348 COX17Q14061 63 aa8.59□□□□□ -1.03
SHMT2-229ENST00000557348 LINC01556Q5JQF7 62 aa8.59□□□□□ -1.03
SHMT2-229ENST00000557348 UPK3BQ9BT76 320 aa8.59□□□□□ -1.03
SHMT2-229ENST00000557348 PKD1L1Q8TDX9 2849 aa8.59□□□□□ -1.04
SHMT2-229ENST00000557348 H3BQ85 93 aa8.58□□□□□ -1.04
SHMT2-229ENST00000557348 MRAPQ8TCY5 172 aa8.58□□□□□ -1.04
SHMT2-229ENST00000557348 CCKP06307 115 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 LINC00158P58513 81 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 ESRGQ1W209 222 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 FAM218AQ96MZ4 157 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 LINC00167Q96N53 147 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 B9D2Q9BPU9 175 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 SND1-IT1Q9HBX3 110 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 IGLV10-54A0A075B6I4 117 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 USP17L23D6RBM5 183 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 ENHOQ6UWT2 76 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 WFDC10BQ8IUB3 73 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 ORMDL1Q9P0S3 153 aa8.56□□□□□ -1.04
SHMT2-229ENST00000557348 CCL18P55774 89 aa8.55□□□□□ -1.04
SHMT2-229ENST00000557348 Q8N3U1 123 aa8.55□□□□□ -1.04
SHMT2-229ENST00000557348 CMYA5Q8N3K9 4069 aa8.55□□□□□ -1.04
SHMT2-229ENST00000557348 DNAH10OSP0CZ25 163 aa8.54□□□□□ -1.04
SHMT2-229ENST00000557348 KIAA0087Q14695 138 aa8.54□□□□□ -1.04
SHMT2-229ENST00000557348 MIR7-3HGQ8N6C7 128 aa8.54□□□□□ -1.04
SHMT2-229ENST00000557348 A0A0U1RRA0 63 aa8.53□□□□□ -1.04
SHMT2-229ENST00000557348 F8WDY8 70 aa8.53□□□□□ -1.04
SHMT2-229ENST00000557348 TMEM256-PLSCR3K7ERE1 68 aa8.53□□□□□ -1.04
SHMT2-229ENST00000557348 SPAG11BQ08648 103 aa8.53□□□□□ -1.04
SHMT2-229ENST00000557348 LOC107984640A0A0U1RRK4 108 aa8.53□□□□□ -1.04
SHMT2-229ENST00000557348 LINC00337Q8N6G1 96 aa8.53□□□□□ -1.04
SHMT2-229ENST00000557348 SMIM11BQ8TCY0 68 aa8.53□□□□□ -1.04
SHMT2-229ENST00000557348 C1orf43Q9BWL3 253 aa8.52□□□□□ -1.05
SHMT2-229ENST00000557348 LINC00846Q9NV44 126 aa8.52□□□□□ -1.05
SHMT2-229ENST00000557348 IGKV2-28A0A075B6P5 120 aa8.51□□□□□ -1.05
SHMT2-229ENST00000557348 IGKV2D-28P01615 120 aa8.51□□□□□ -1.05
SHMT2-229ENST00000557348 GVQW2A0A096LPI5 108 aaPredicted RBP8.5□□□□□ -1.05
SHMT2-229ENST00000557348 RMI2Q96E14 147 aa8.5□□□□□ -1.05
SHMT2-229ENST00000557348 MEGF8Q7Z7M0 2845 aa8.5□□□□□ -1.05
SHMT2-229ENST00000557348 NOTCH1P46531 2555 aa8.5□□□□□ -1.05
SHMT2-229ENST00000557348 PDE6GP18545 87 aa8.49□□□□□ -1.05
SHMT2-229ENST00000557348 PFN2P35080 140 aa8.49□□□□□ -1.05
SHMT2-229ENST00000557348 Q9HAA7 133 aa8.49□□□□□ -1.05
SHMT2-229ENST00000557348 C14orf132Q9NPU4 83 aa8.49□□□□□ -1.05
SHMT2-229ENST00000557348 DNAH3Q8TD57 4116 aa8.49□□□□□ -1.05
SHMT2-229ENST00000557348 EPM2AB3EWF7 344 aa8.49□□□□□ -1.05
SHMT2-229ENST00000557348 UBL5Q9BZL1 73 aa8.49□□□□□ -1.05
SHMT2-229ENST00000557348 ZNF561-AS1K7EIQ3 104 aa8.48□□□□□ -1.05
SHMT2-229ENST00000557348 A0A087WYN8 130 aa8.47□□□□□ -1.05
SHMT2-229ENST00000557348 NDUFC1O43677 76 aa8.47□□□□□ -1.05
SHMT2-229ENST00000557348 GHRHP01286 108 aa8.47□□□□□ -1.05
SHMT2-229ENST00000557348 ATP5EP56381 51 aaPredicted RBP8.47□□□□□ -1.05
SHMT2-229ENST00000557348 LINC00588Q9Y4M8 146 aa8.47□□□□□ -1.05
SHMT2-229ENST00000557348 LECT2O14960 151 aa8.46□□□□□ -1.05
SHMT2-229ENST00000557348 SERP1Q9Y6X1 66 aa8.46□□□□□ -1.05
SHMT2-229ENST00000557348 KRTAP26-1Q6PEX3 210 aa8.46□□□□□ -1.06
SHMT2-229ENST00000557348 TRAV7A0A075B6U4 112 aa8.45□□□□□ -1.06
SHMT2-229ENST00000557348 IGKV3D-7A0A0C4DH55 119 aa8.45□□□□□ -1.06
SHMT2-229ENST00000557348 IGKV2D-24A0A075B6R9 120 aa8.44□□□□□ -1.06
SHMT2-229ENST00000557348 LOC110117498A0A087WWA1 95 aa8.43□□□□□ -1.06
SHMT2-229ENST00000557348 NUPR2A6NF83 97 aa8.43□□□□□ -1.06
SHMT2-229ENST00000557348 KLKP1Q107X0 134 aa8.43□□□□□ -1.06
SHMT2-229ENST00000557348 UNQ6190/PRO20217Q6UXQ8 127 aa8.43□□□□□ -1.06
SHMT2-229ENST00000557348 Q8N814 137 aa8.43□□□□□ -1.06
SHMT2-229ENST00000557348 CAMK2N2Q96S95 79 aa8.43□□□□□ -1.06
SHMT2-229ENST00000557348 TENM3Q9P273 2699 aa8.42□□□□□ -1.06
SHMT2-229ENST00000557348 FAM236DA0A1B0GTK5 79 aa8.42□□□□□ -1.06
SHMT2-229ENST00000557348 FAM236CP0DP71 79 aa8.42□□□□□ -1.06
SHMT2-229ENST00000557348 Q5XG85 94 aa8.41□□□□□ -1.06
SHMT2-229ENST00000557348 CXCL6P80162 114 aa8.4□□□□□ -1.06
SHMT2-229ENST00000557348 C6orf223Q8N319 242 aa8.4□□□□□ -1.06
SHMT2-229ENST00000557348 C15orf56Q8N910 161 aa8.4□□□□□ -1.06
SHMT2-229ENST00000557348 NCR3O14931 201 aa8.4□□□□□ -1.07
SHMT2-229ENST00000557348 C10orf25Q5T742 122 aa8.39□□□□□ -1.07
SHMT2-229ENST00000557348 UBE2DNLQ8IWF7 75 aa8.39□□□□□ -1.07
SHMT2-229ENST00000557348 C6orf48Q9UBA6 75 aa8.39□□□□□ -1.07
SHMT2-229ENST00000557348 SMIM26A0A096LP01 95 aa8.38□□□□□ -1.07
SHMT2-229ENST00000557348 C9orf116Q5BN46 136 aaPredicted RBP8.38□□□□□ -1.07
SHMT2-229ENST00000557348 DSCR8Q96T75 97 aa8.38□□□□□ -1.07
SHMT2-229ENST00000557348 APLNQ9ULZ1 77 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms