RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 MYO9AB2RTY4 2548 aa12.01□□□□□ -0.49
SYNE3-204ENST00000555759 IGLV6-57P01721 117 aa12□□□□□ -0.49
SYNE3-204ENST00000555759 GVQW2A0A096LPI5 108 aaPredicted RBP12□□□□□ -0.49
SYNE3-204ENST00000555759 LINC01600Q96MT4 127 aa12□□□□□ -0.49
SYNE3-204ENST00000555759 PIEZO1Q92508 2521 aa11.99□□□□□ -0.49
SYNE3-204ENST00000555759 TRBV7-4A0A0J9YYF1 115 aa11.99□□□□□ -0.49
SYNE3-204ENST00000555759 SPINK1P00995 79 aa11.99□□□□□ -0.49
SYNE3-204ENST00000555759 LINC00476Q8WZB0 136 aa11.98□□□□□ -0.49
SYNE3-204ENST00000555759 NCOR2Q9Y618 2525 aa11.98□□□□□ -0.49
SYNE3-204ENST00000555759 LINC01556Q5JQF7 62 aa11.97□□□□□ -0.49
SYNE3-204ENST00000555759 FSHBP01225 129 aa11.95□□□□□ -0.5
SYNE3-204ENST00000555759 HIVEP3Q5T1R4 2406 aa11.95□□□□□ -0.5
SYNE3-204ENST00000555759 RETNLBQ9BQ08 111 aa11.94□□□□□ -0.5
SYNE3-204ENST00000555759 EIF4EBP3O60516 100 aaPredicted RBP11.94□□□□□ -0.5
SYNE3-204ENST00000555759 ATP11AUNQ6ZP68 121 aa11.94□□□□□ -0.5
SYNE3-204ENST00000555759 OXLD1Q5BKU9 147 aa11.93□□□□□ -0.5
SYNE3-204ENST00000555759 M0R2N4 97 aa11.93□□□□□ -0.5
SYNE3-204ENST00000555759 H3BNG1 76 aa11.91□□□□□ -0.5
SYNE3-204ENST00000555759 COA5Q86WW8 74 aa11.91□□□□□ -0.5
SYNE3-204ENST00000555759 MOBPQ13875 183 aa11.9□□□□□ -0.51
SYNE3-204ENST00000555759 LOC101927531A0A1B0GV80 90 aa11.89□□□□□ -0.51
SYNE3-204ENST00000555759 C7orf65Q6ZTY9 151 aa11.89□□□□□ -0.51
SYNE3-204ENST00000555759 MYO18BQ8IUG5 2567 aa11.89□□□□□ -0.51
SYNE3-204ENST00000555759 KTN1-AS1Q86SY8 53 aa11.88□□□□□ -0.51
SYNE3-204ENST00000555759 K7EQZ3 153 aa11.87□□□□□ -0.51
SYNE3-204ENST00000555759 CCDC168Q8NDH2 2452 aa11.87□□□□□ -0.51
SYNE3-204ENST00000555759 NUPR2A6NF83 97 aa11.86□□□□□ -0.51
SYNE3-204ENST00000555759 A8MWP4 228 aa11.86□□□□□ -0.51
SYNE3-204ENST00000555759 IGKV2D-30A0A075B6S6 120 aa11.85□□□□□ -0.51
SYNE3-204ENST00000555759 IGKV2-30P06310 120 aa11.85□□□□□ -0.51
SYNE3-204ENST00000555759 PIEZO2Q9H5I5 2752 aa11.85□□□□□ -0.51
SYNE3-204ENST00000555759 X6R8D5 127 aa11.84□□□□□ -0.51
SYNE3-204ENST00000555759 IGF2RP11717 2491 aa11.84□□□□□ -0.51
SYNE3-204ENST00000555759 COL4A2P08572 1712 aa11.84□□□□□ -0.51
SYNE3-204ENST00000555759 ST20-AS1Q8NBB2 130 aa11.83□□□□□ -0.51
SYNE3-204ENST00000555759 LINC00528Q8N1L1 170 aa11.83□□□□□ -0.52
SYNE3-204ENST00000555759 PRR15Q8IV56 129 aa11.82□□□□□ -0.52
SYNE3-204ENST00000555759 IGLV5-52A0A0A0MRZ9 124 aa11.81□□□□□ -0.52
SYNE3-204ENST00000555759 KRTAP10-9P60411 292 aa11.8□□□□□ -0.52
SYNE3-204ENST00000555759 RPL37AP61513 92 aaKnown RBP11.8□□□□□ -0.52
SYNE3-204ENST00000555759 TLN1Q9Y490 2541 aaKnown RBP11.8□□□□□ -0.52
SYNE3-204ENST00000555759 OBSCN-AS1Q96MR7 158 aa11.79□□□□□ -0.52
SYNE3-204ENST00000555759 KCNQ1DNQ9H478 68 aa11.79□□□□□ -0.52
SYNE3-204ENST00000555759 LCA10Q71F78 164 aa11.79□□□□□ -0.52
SYNE3-204ENST00000555759 MUC4Q99102 2169 aa11.79□□□□□ -0.52
SYNE3-204ENST00000555759 COL27A1Q8IZC6 1860 aaPredicted RBP11.78□□□□□ -0.52
SYNE3-204ENST00000555759 UQCR11O14957 56 aa11.77□□□□□ -0.52
SYNE3-204ENST00000555759 ABCA2Q9BZC7 2435 aa11.77□□□□□ -0.53
SYNE3-204ENST00000555759 Q6ZRP5 223 aa11.75□□□□□ -0.53
SYNE3-204ENST00000555759 EPM2AB3EWF7 344 aa11.74□□□□□ -0.53
SYNE3-204ENST00000555759 C9orf129Q5T035 196 aaKnown RBP11.73□□□□□ -0.53
SYNE3-204ENST00000555759 SPANXA2-OT1Q8N9U9 137 aa11.73□□□□□ -0.53
SYNE3-204ENST00000555759 MRPL34Q9BQ48 92 aaKnown RBP11.73□□□□□ -0.53
SYNE3-204ENST00000555759 C16orf90A8MZG2 172 aa11.72□□□□□ -0.53
SYNE3-204ENST00000555759 SRCAPQ6ZRS2 3230 aa11.71□□□□□ -0.53
SYNE3-204ENST00000555759 LY6G6CO95867 125 aa11.71□□□□□ -0.54
SYNE3-204ENST00000555759 IGLV1-50A0A075B6I6 118 aa11.7□□□□□ -0.54
SYNE3-204ENST00000555759 FN1P02751 2386 aaKnown RBP11.7□□□□□ -0.54
SYNE3-204ENST00000555759 FAM229AH3BQW9 127 aa11.7□□□□□ -0.54
SYNE3-204ENST00000555759 LINC00313P59037 77 aa11.7□□□□□ -0.54
SYNE3-204ENST00000555759 Q1T7F1 81 aa11.69□□□□□ -0.54
SYNE3-204ENST00000555759 EP400Q96L91 3159 aa11.68□□□□□ -0.54
SYNE3-204ENST00000555759 Q8N377 158 aa11.67□□□□□ -0.54
SYNE3-204ENST00000555759 SMR3AQ99954 134 aa11.66□□□□□ -0.54
SYNE3-204ENST00000555759 IGFL1Q6UW32 110 aa11.66□□□□□ -0.54
SYNE3-204ENST00000555759 CDC42SE1Q9NRR8 79 aa11.66□□□□□ -0.54
SYNE3-204ENST00000555759 Q8NAQ8 132 aa11.66□□□□□ -0.54
SYNE3-204ENST00000555759 PHF5AQ7RTV0 110 aaKnown RBP11.66□□□□□ -0.54
SYNE3-204ENST00000555759 WDR87Q6ZQQ6 2873 aa11.65□□□□□ -0.54
SYNE3-204ENST00000555759 MIR22HGQ0VDD5 57 aa11.65□□□□□ -0.54
SYNE3-204ENST00000555759 SPINT4Q6UDR6 99 aa11.64□□□□□ -0.55
SYNE3-204ENST00000555759 PRR34Q9NV39 138 aa11.63□□□□□ -0.55
SYNE3-204ENST00000555759 C1orf134Q5TEV5 83 aa11.62□□□□□ -0.55
SYNE3-204ENST00000555759 IGLV8-61A0A075B6I0 122 aa11.61□□□□□ -0.55
SYNE3-204ENST00000555759 USP9XQ93008 2570 aaPredicted RBP11.61□□□□□ -0.55
SYNE3-204ENST00000555759 Q5XG85 94 aa11.61□□□□□ -0.55
SYNE3-204ENST00000555759 CSNK1G2-AS1Q8NCQ2 148 aa11.61□□□□□ -0.55
SYNE3-204ENST00000555759 C8orf17Q9NRJ1 99 aa11.61□□□□□ -0.55
SYNE3-204ENST00000555759 OCR1Q9BZK8 76 aa11.6□□□□□ -0.55
SYNE3-204ENST00000555759 DNAH10OSP0CZ25 163 aa11.59□□□□□ -0.55
SYNE3-204ENST00000555759 PCSK5Q92824 1860 aa11.58□□□□□ -0.56
SYNE3-204ENST00000555759 PLA2G2DQ9UNK4 145 aa11.58□□□□□ -0.56
SYNE3-204ENST00000555759 SPACA4Q8TDM5 124 aa11.58□□□□□ -0.56
SYNE3-204ENST00000555759 MDFIQ99750 246 aa11.57□□□□□ -0.56
SYNE3-204ENST00000555759 FAM168BA1KXE4 195 aa11.56□□□□□ -0.56
SYNE3-204ENST00000555759 ZNF575Q86XF7 245 aa11.56□□□□□ -0.56
SYNE3-204ENST00000555759 ABCA12Q86UK0 2595 aa11.53□□□□□ -0.56
SYNE3-204ENST00000555759 A0A1B0GVX0 72 aa11.53□□□□□ -0.56
SYNE3-204ENST00000555759 A0A1W2PNM2 257 aa11.53□□□□□ -0.56
SYNE3-204ENST00000555759 LINC00612Q8N6U2 182 aa11.53□□□□□ -0.56
SYNE3-204ENST00000555759 SSBP3-AS1Q7Z2R9 100 aa11.53□□□□□ -0.56
SYNE3-204ENST00000555759 DOPEY1Q5JWR5 2465 aa11.52□□□□□ -0.56
SYNE3-204ENST00000555759 TLX1NBP0CAT3 122 aa11.52□□□□□ -0.56
SYNE3-204ENST00000555759 IGLV5-48A0A075B6I7 105 aa11.52□□□□□ -0.57
SYNE3-204ENST00000555759 LINC00588Q9Y4M8 146 aa11.52□□□□□ -0.57
SYNE3-204ENST00000555759 JMJD1CQ15652 2540 aa11.52□□□□□ -0.57
SYNE3-204ENST00000555759 C15orf56Q8N910 161 aa11.51□□□□□ -0.57
SYNE3-204ENST00000555759 ZNF462Q96JM2 2506 aa11.51□□□□□ -0.57
SYNE3-204ENST00000555759 TLN2Q9Y4G6 2542 aa11.47□□□□□ -0.57
SYNE3-204ENST00000555759 PKD1L2Q7Z442 2459 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms