RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 PPRC1Q5VV67 1664 aaKnown RBP0.93□□□□□ -2.26
SCFD1-208ENST00000553278 AKAP6Q13023 2319 aa0.93□□□□□ -2.26
SCFD1-208ENST00000553278 PTPRQQ9UMZ3 2332 aa0.93□□□□□ -2.26
SCFD1-208ENST00000553278 TMEM131LA2VDJ0 1609 aa0.92□□□□□ -2.26
SCFD1-208ENST00000553278 PKDREJQ9NTG1 2253 aa0.91□□□□□ -2.26
SCFD1-208ENST00000553278 DEFB109BQ30KR1 87 aa0.91□□□□□ -2.26
SCFD1-208ENST00000553278 TSC2P49815 1807 aa0.91□□□□□ -2.26
SCFD1-208ENST00000553278 TENM3Q9P273 2699 aa0.9□□□□□ -2.27
SCFD1-208ENST00000553278 I3L3M4 83 aa0.9□□□□□ -2.27
SCFD1-208ENST00000553278 SPRR1BP22528 89 aa0.9□□□□□ -2.27
SCFD1-208ENST00000553278 SPRR1AP35321 89 aa0.9□□□□□ -2.27
SCFD1-208ENST00000553278 ERVK-7P63135 1459 aa0.9□□□□□ -2.27
SCFD1-208ENST00000553278 DCAF1Q9Y4B6 1507 aa0.89□□□□□ -2.27
SCFD1-208ENST00000553278 SPTY2D1-AS1A0A0U1RR47 76 aa0.89□□□□□ -2.27
SCFD1-208ENST00000553278 COL14A1Q05707 1796 aaKnown RBP0.88□□□□□ -2.27
SCFD1-208ENST00000553278 GVINP1Q7Z2Y8 2422 aa0.88□□□□□ -2.27
SCFD1-208ENST00000553278 OTOGQ6ZRI0 2925 aa0.88□□□□□ -2.27
SCFD1-208ENST00000553278 FMN2Q9NZ56 1722 aa0.88□□□□□ -2.27
SCFD1-208ENST00000553278 UNC79Q9P2D8 2635 aa0.87□□□□□ -2.27
SCFD1-208ENST00000553278 UBR3Q6ZT12 1888 aa0.87□□□□□ -2.27
SCFD1-208ENST00000553278 LRRC7Q96NW7 1537 aa0.87□□□□□ -2.27
SCFD1-208ENST00000553278 DIP2BQ9P265 1576 aa0.87□□□□□ -2.27
SCFD1-208ENST00000553278 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.86□□□□□ -2.27
SCFD1-208ENST00000553278 KRTAP5-10Q6L8G5 202 aa0.86□□□□□ -2.27
SCFD1-208ENST00000553278 U3KQA8 63 aa0.86□□□□□ -2.27
SCFD1-208ENST00000553278 NKTRP30414 1462 aaKnown RBP0.86□□□□□ -2.27
SCFD1-208ENST00000553278 CPSF4LA6NMK7 179 aaKnown RBP0.85□□□□□ -2.27
SCFD1-208ENST00000553278 GAFA1Q96PS6 74 aa0.85□□□□□ -2.27
SCFD1-208ENST00000553278 RGPD1P0DJD0 1748 aa0.84□□□□□ -2.27
SCFD1-208ENST00000553278 RGPD2P0DJD1 1756 aa0.84□□□□□ -2.27
SCFD1-208ENST00000553278 KRTAP21-1Q3LI58 79 aa0.84□□□□□ -2.27
SCFD1-208ENST00000553278 QSER1Q2KHR3 1735 aa0.84□□□□□ -2.28
SCFD1-208ENST00000553278 COX7BP24311 80 aa0.83□□□□□ -2.28
SCFD1-208ENST00000553278 AHNAK2Q8IVF2 5795 aa0.82□□□□□ -2.28
SCFD1-208ENST00000553278 TRAV21A0A0B4J279 112 aa0.82□□□□□ -2.28
SCFD1-208ENST00000553278 H3BUT2 72 aa0.82□□□□□ -2.28
SCFD1-208ENST00000553278 NDUFB1O75438 58 aa0.82□□□□□ -2.28
SCFD1-208ENST00000553278 FXYD6Q9H0Q3 95 aa0.82□□□□□ -2.28
SCFD1-208ENST00000553278 KDM5DQ9BY66 1539 aa0.82□□□□□ -2.28
SCFD1-208ENST00000553278 URB2Q14146 1524 aaKnown RBP0.81□□□□□ -2.28
SCFD1-208ENST00000553278 SPINK4O60575 86 aa0.81□□□□□ -2.28
SCFD1-208ENST00000553278 RPL38P63173 70 aaKnown RBP0.81□□□□□ -2.28
SCFD1-208ENST00000553278 DEFB105AQ8NG35 78 aa0.81□□□□□ -2.28
SCFD1-208ENST00000553278 CSMD3Q7Z407 3707 aa0.8□□□□□ -2.28
SCFD1-208ENST00000553278 BVES-AS1Q5T3Y7 98 aa0.8□□□□□ -2.28
SCFD1-208ENST00000553278 WFDC9Q8NEX5 89 aa0.8□□□□□ -2.28
SCFD1-208ENST00000553278 MRPL34Q9BQ48 92 aaKnown RBP0.79□□□□□ -2.28
SCFD1-208ENST00000553278 CLIP1P30622 1438 aa0.79□□□□□ -2.28
SCFD1-208ENST00000553278 ABCC1P33527 1531 aa0.79□□□□□ -2.28
SCFD1-208ENST00000553278 CHD6Q8TD26 2715 aa0.78□□□□□ -2.28
SCFD1-208ENST00000553278 CCL22O00626 93 aa0.78□□□□□ -2.28
SCFD1-208ENST00000553278 APLNQ9ULZ1 77 aa0.78□□□□□ -2.28
SCFD1-208ENST00000553278 RRBP1Q9P2E9 1410 aaKnown RBP0.78□□□□□ -2.28
SCFD1-208ENST00000553278 LTN1O94822 1766 aa0.78□□□□□ -2.29
SCFD1-208ENST00000553278 ATP5EP2Q5VTU8 51 aa0.77□□□□□ -2.29
SCFD1-208ENST00000553278 VWFP04275 2813 aa0.77□□□□□ -2.29
SCFD1-208ENST00000553278 BCORQ6W2J9 1755 aa0.76□□□□□ -2.29
SCFD1-208ENST00000553278 DEFB121Q5J5C9 76 aa0.76□□□□□ -2.29
SCFD1-208ENST00000553278 PIK3C2BO00750 1634 aa0.75□□□□□ -2.29
SCFD1-208ENST00000553278 CFAP74Q9C0B2 1584 aa0.75□□□□□ -2.29
SCFD1-208ENST00000553278 NCOR1O75376 2440 aa0.75□□□□□ -2.29
SCFD1-208ENST00000553278 TENM4Q6N022 2769 aa0.74□□□□□ -2.29
SCFD1-208ENST00000553278 POLR1AO95602 1720 aaPredicted RBP0.74□□□□□ -2.29
SCFD1-208ENST00000553278 USP32Q8NFA0 1604 aa0.74□□□□□ -2.29
SCFD1-208ENST00000553278 NCOR2Q9Y618 2525 aa0.74□□□□□ -2.29
SCFD1-208ENST00000553278 NCOA2Q15596 1464 aa0.73□□□□□ -2.29
SCFD1-208ENST00000553278 IGSF10Q6WRI0 2623 aa0.73□□□□□ -2.29
SCFD1-208ENST00000553278 KLK9Q2XQG4 91 aa0.73□□□□□ -2.29
SCFD1-208ENST00000553278 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.73□□□□□ -2.295e-6■■■□□ 15.5
SCFD1-208ENST00000553278 PTPN13Q12923 2485 aa0.72□□□□□ -2.29
SCFD1-208ENST00000553278 A0A087WXM4 84 aa0.71□□□□□ -2.3
SCFD1-208ENST00000553278 C18orf32Q8TCD1 76 aa0.71□□□□□ -2.3
SCFD1-208ENST00000553278 SPTA1P02549 2419 aa0.71□□□□□ -2.3
SCFD1-208ENST00000553278 ATRQ13535 2644 aa0.71□□□□□ -2.3
SCFD1-208ENST00000553278 UBR5O95071 2799 aaPredicted RBP0.71□□□□□ -2.3
SCFD1-208ENST00000553278 ANKARQ7Z5J8 1434 aa0.71□□□□□ -2.3
SCFD1-208ENST00000553278 PTPN23Q9H3S7 1636 aa0.71□□□□□ -2.3
SCFD1-208ENST00000553278 RGPD8O14715 1765 aaPredicted RBP0.7□□□□□ -2.3
SCFD1-208ENST00000553278 RGPD5Q99666 1765 aa0.7□□□□□ -2.3
SCFD1-208ENST00000553278 MAGI3Q5TCQ9 1506 aa0.7□□□□□ -2.3
SCFD1-208ENST00000553278 PREX1Q8TCU6 1659 aa0.7□□□□□ -2.3
SCFD1-208ENST00000553278 TIAM2Q8IVF5 1701 aa0.69□□□□□ -2.3
SCFD1-208ENST00000553278 UMAD1C9J7I0 102 aa0.69□□□□□ -2.3
SCFD1-208ENST00000553278 H1FX-AS1Q4G0G2 97 aa0.69□□□□□ -2.3
SCFD1-208ENST00000553278 HEPN1Q6WQI6 88 aa0.69□□□□□ -2.3
SCFD1-208ENST00000553278 MAST4O15021 2626 aa0.69□□□□□ -2.3
SCFD1-208ENST00000553278 CEP170BQ9Y4F5 1589 aaPredicted RBP0.69□□□□□ -2.3
SCFD1-208ENST00000553278 ZNF831Q5JPB2 1677 aa0.69□□□□□ -2.3
SCFD1-208ENST00000553278 WNK2Q9Y3S1 2297 aa0.67□□□□□ -2.3
SCFD1-208ENST00000553278 LRP1Q07954 4544 aaKnown RBP0.67□□□□□ -2.3
SCFD1-208ENST00000553278 SMIM13P0DJ93 91 aa0.67□□□□□ -2.3
SCFD1-208ENST00000553278 CSPG4Q6UVK1 2322 aa0.67□□□□□ -2.3
SCFD1-208ENST00000553278 MAP3K1Q13233 1512 aa0.67□□□□□ -2.3
SCFD1-208ENST00000553278 IFI6P09912 130 aa0.66□□□□□ -2.3
SCFD1-208ENST00000553278 IFI27P40305 119 aaPredicted RBP0.66□□□□□ -2.3
SCFD1-208ENST00000553278 CDKN2A-AS1Q9UH64 79 aa0.66□□□□□ -2.3
SCFD1-208ENST00000553278 HIVEP3Q5T1R4 2406 aa0.66□□□□□ -2.3
SCFD1-208ENST00000553278 CNOT1A5YKK6 2376 aaKnown RBP0.65□□□□□ -2.3
SCFD1-208ENST00000553278 ARFGEF2Q9Y6D5 1785 aa0.65□□□□□ -2.3
SCFD1-208ENST00000553278 ABCA2Q9BZC7 2435 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms