RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 RPS29P62273 56 aaKnown RBP6.99□□□□□ -1.29
VPS29-211ENST00000553128 SMCR5Q8TEV8 140 aa6.99□□□□□ -1.29
VPS29-211ENST00000553128 TIMM17AQ99595 171 aa6.99□□□□□ -1.29
VPS29-211ENST00000553128 IGLV9-49A0A0B4J1Y8 123 aa6.98□□□□□ -1.29
VPS29-211ENST00000553128 ATP5LO75964 103 aa6.98□□□□□ -1.29
VPS29-211ENST00000553128 ADCYAP1P18509 176 aa6.98□□□□□ -1.29
VPS29-211ENST00000553128 RPL24P83731 157 aaKnown RBP6.98□□□□□ -1.29
VPS29-211ENST00000553128 LINC00483Q53H64 154 aa6.98□□□□□ -1.29
VPS29-211ENST00000553128 NAT8Q9UHE5 227 aa6.98□□□□□ -1.29
VPS29-211ENST00000553128 LAMTOR2Q9Y2Q5 125 aa6.98□□□□□ -1.29
VPS29-211ENST00000553128 PAPPA-AS1Q5QFB9 102 aa6.97□□□□□ -1.29
VPS29-211ENST00000553128 TOMM6Q96B49 74 aa6.97□□□□□ -1.29
VPS29-211ENST00000553128 GAGE2AQ6NT46 116 aa6.96□□□□□ -1.3
VPS29-211ENST00000553128 TCTE3Q8IZS6 198 aa6.96□□□□□ -1.3
VPS29-211ENST00000553128 ERG28Q9UKR5 140 aa6.96□□□□□ -1.3
VPS29-211ENST00000553128 C9orf92A6NGG3 77 aa6.95□□□□□ -1.3
VPS29-211ENST00000553128 ATP5L2Q7Z4Y8 100 aa6.95□□□□□ -1.3
VPS29-211ENST00000553128 AKAP14Q86UN6 197 aa6.95□□□□□ -1.3
VPS29-211ENST00000553128 ZNF625Q96I27 306 aaPredicted RBP6.95□□□□□ -1.3
VPS29-211ENST00000553128 KRTAP4-16G5E9R7 235 aaPredicted RBP6.93□□□□□ -1.3
VPS29-211ENST00000553128 K7EMI3 77 aa6.93□□□□□ -1.3
VPS29-211ENST00000553128 SSBP3-AS1Q7Z2R9 100 aa6.93□□□□□ -1.3
VPS29-211ENST00000553128 ERASQ7Z444 233 aa6.93□□□□□ -1.3
VPS29-211ENST00000553128 SCGB3A1Q96QR1 104 aa6.93□□□□□ -1.3
VPS29-211ENST00000553128 CST9LQ9H4G1 147 aa6.93□□□□□ -1.3
VPS29-211ENST00000553128 IGLV5-39A0A0G2JS06 123 aa6.92□□□□□ -1.3
VPS29-211ENST00000553128 ERC2-IT1O76042 136 aa6.92□□□□□ -1.3
VPS29-211ENST00000553128 SPRR1AP35321 89 aa6.92□□□□□ -1.3
VPS29-211ENST00000553128 COX6B2Q6YFQ2 88 aa6.92□□□□□ -1.3
VPS29-211ENST00000553128 NXT2Q9NPJ8 142 aaKnown RBP6.92□□□□□ -1.3
VPS29-211ENST00000553128 SYNE2Q8WXH0 6885 aaKnown RBP6.91□□□□□ -1.3
VPS29-211ENST00000553128 PRYO14603 147 aa6.9□□□□□ -1.3
VPS29-211ENST00000553128 COX17Q14061 63 aa6.9□□□□□ -1.3
VPS29-211ENST00000553128 MRPL18Q9H0U6 180 aaKnown RBP6.89□□□□□ -1.31
VPS29-211ENST00000553128 ETDCA0A1B0GVM5 59 aa6.88□□□□□ -1.31
VPS29-211ENST00000553128 H3BRM9 83 aa6.88□□□□□ -1.31
VPS29-211ENST00000553128 KCNQ1DNQ9H478 68 aa6.88□□□□□ -1.31
VPS29-211ENST00000553128 A0A0U1RRA0 63 aa6.87□□□□□ -1.31
VPS29-211ENST00000553128 NCR3O14931 201 aa6.87□□□□□ -1.31
VPS29-211ENST00000553128 MACF1Q9UPN3 7388 aaKnown RBP6.87□□□□□ -1.31
VPS29-211ENST00000553128 ZNF22P17026 224 aaPredicted RBP6.86□□□□□ -1.31
VPS29-211ENST00000553128 G0S2P27469 103 aa6.86□□□□□ -1.31
VPS29-211ENST00000553128 PMVKQ15126 192 aa6.86□□□□□ -1.31
VPS29-211ENST00000553128 B5MCH6 92 aa6.85□□□□□ -1.31
VPS29-211ENST00000553128 IGLC3P0DOY3 106 aa6.85□□□□□ -1.31
VPS29-211ENST00000553128 LINC00158P58513 81 aa6.85□□□□□ -1.31
VPS29-211ENST00000553128 KIAA1644Q3SXP7 199 aa6.85□□□□□ -1.31
VPS29-211ENST00000553128 C9orf153Q5TBE3 101 aa6.85□□□□□ -1.31
VPS29-211ENST00000553128 Q9BRP9 147 aa6.85□□□□□ -1.31
VPS29-211ENST00000553128 TRBV10-3A0A0K0K1G6 114 aa6.84□□□□□ -1.31
VPS29-211ENST00000553128 IGLV6-57P01721 117 aa6.83□□□□□ -1.32
VPS29-211ENST00000553128 KRTAP19-1Q8IUB9 90 aa6.83□□□□□ -1.32
VPS29-211ENST00000553128 KRTAP9-8Q9BYQ0 159 aa6.83□□□□□ -1.32
VPS29-211ENST00000553128 HRCT1Q6UXD1 115 aa6.82□□□□□ -1.32
VPS29-211ENST00000553128 BOD1L2Q8IYS8 172 aa6.82□□□□□ -1.32
VPS29-211ENST00000553128 PEA15Q15121 130 aa6.81□□□□□ -1.32
VPS29-211ENST00000553128 LINC01546A6NGU7 62 aa6.8□□□□□ -1.32
VPS29-211ENST00000553128 SMIM13P0DJ93 91 aa6.79□□□□□ -1.32
VPS29-211ENST00000553128 NDUFA6P56556 154 aa6.79□□□□□ -1.32
VPS29-211ENST00000553128 RPL37P61927 97 aaKnown RBP6.79□□□□□ -1.32
VPS29-211ENST00000553128 ST20-AS1Q8NBB2 130 aa6.78□□□□□ -1.32
VPS29-211ENST00000553128 TRAV9-1A0A075B6T8 112 aa6.77□□□□□ -1.33
VPS29-211ENST00000553128 C11orf86A6NJI1 115 aa6.77□□□□□ -1.33
VPS29-211ENST00000553128 CFC1P0CG37 223 aa6.77□□□□□ -1.33
VPS29-211ENST00000553128 Q6ZRX8 168 aa6.77□□□□□ -1.33
VPS29-211ENST00000553128 LINC01549A6NIU2 74 aa6.76□□□□□ -1.33
VPS29-211ENST00000553128 Q6Q795 121 aa6.76□□□□□ -1.33
VPS29-211ENST00000553128 MIR7-3HGQ8N6C7 128 aa6.76□□□□□ -1.33
VPS29-211ENST00000553128 LIMD2Q9BT23 127 aa6.76□□□□□ -1.33
VPS29-211ENST00000553128 TMEM170BQ5T4T1 132 aa6.75□□□□□ -1.33
VPS29-211ENST00000553128 SFTA2Q6UW10 78 aa6.75□□□□□ -1.33
VPS29-211ENST00000553128 A0A096LNJ9 63 aa6.74□□□□□ -1.33
VPS29-211ENST00000553128 ANAPC16Q96DE5 110 aa6.74□□□□□ -1.33
VPS29-211ENST00000553128 ATP6V1G1O75348 118 aa6.72□□□□□ -1.33
VPS29-211ENST00000553128 MT-ND4LP03901 98 aa6.72□□□□□ -1.33
VPS29-211ENST00000553128 DDTP30046 118 aa6.72□□□□□ -1.33
VPS29-211ENST00000553128 CHTOPQ9Y3Y2 248 aaKnown RBP6.72□□□□□ -1.33
VPS29-211ENST00000553128 MEIG1Q5JSS6 88 aa6.71□□□□□ -1.34
VPS29-211ENST00000553128 FA2HQ7L5A8 372 aa6.71□□□□□ -1.34
VPS29-211ENST00000553128 H7C2G1 150 aa6.7□□□□□ -1.34
VPS29-211ENST00000553128 S100A12P80511 92 aa6.7□□□□□ -1.34
VPS29-211ENST00000553128 BAGE3Q86Y29 109 aa6.69□□□□□ -1.34
VPS29-211ENST00000553128 SMCO4Q9NRQ5 59 aa6.69□□□□□ -1.34
VPS29-211ENST00000553128 hCG_2014768A0A024R1R8 64 aa6.68□□□□□ -1.34
VPS29-211ENST00000553128 TMEM223A0PJW6 202 aa6.68□□□□□ -1.34
VPS29-211ENST00000553128 PMCHL1Q16048 86 aa6.68□□□□□ -1.34
VPS29-211ENST00000553128 C1orf195Q5TG92 126 aa6.68□□□□□ -1.34
VPS29-211ENST00000553128 URB1-AS1Q96HZ7 61 aa6.68□□□□□ -1.34
VPS29-211ENST00000553128 MT2AP02795 61 aa6.67□□□□□ -1.34
VPS29-211ENST00000553128 TRBV10-2A0A0K0K1G8 114 aa6.65□□□□□ -1.34
VPS29-211ENST00000553128 SPRR1BP22528 89 aa6.65□□□□□ -1.34
VPS29-211ENST00000553128 JOSD1Q15040 202 aaPredicted RBP6.65□□□□□ -1.34
VPS29-211ENST00000553128 TRAV23DV6A0A075B6W5 121 aa6.64□□□□□ -1.35
VPS29-211ENST00000553128 LOC107984156A0A0G2JMH3 177 aa6.63□□□□□ -1.35
VPS29-211ENST00000553128 ZNF73O43830 326 aaPredicted RBP6.63□□□□□ -1.35
VPS29-211ENST00000553128 MT1FP04733 61 aa6.63□□□□□ -1.35
VPS29-211ENST00000553128 HERV-K104P63124 156 aa6.63□□□□□ -1.35
VPS29-211ENST00000553128 ARL17AQ8IVW1 177 aa6.63□□□□□ -1.35
VPS29-211ENST00000553128 KRTAP9-3Q9BYQ3 159 aa6.63□□□□□ -1.35
VPS29-211ENST00000553128 A0A0G2JQZ4 141 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms