RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 FAT3Q8TDW7 4589 aa11.75□□□□□ -0.53
DDX55-211ENST00000544429 NMUP48645 174 aa11.74□□□□□ -0.53
DDX55-211ENST00000544429 MRPL55Q7Z7F7 128 aaKnown RBP11.74□□□□□ -0.53
DDX55-211ENST00000544429 HIST1H2BLQ99880 126 aa11.74□□□□□ -0.53
DDX55-211ENST00000544429 SMIM13P0DJ93 91 aa11.73□□□□□ -0.53
DDX55-211ENST00000544429 VPREB1P12018 145 aa11.73□□□□□ -0.53
DDX55-211ENST00000544429 LINC00158P58513 81 aa11.73□□□□□ -0.53
DDX55-211ENST00000544429 LBHQ53QV2 105 aaPredicted RBP11.73□□□□□ -0.53
DDX55-211ENST00000544429 Q8NDZ9 215 aa11.73□□□□□ -0.53
DDX55-211ENST00000544429 DMBT1Q9UGM3 2413 aaPredicted RBP11.72□□□□□ -0.53
DDX55-211ENST00000544429 LINC00587B1AMM8 73 aa11.72□□□□□ -0.53
DDX55-211ENST00000544429 SPINK6Q6UWN8 80 aa11.72□□□□□ -0.53
DDX55-211ENST00000544429 OXTP01178 125 aa11.71□□□□□ -0.53
DDX55-211ENST00000544429 C1orf137Q5JT78 98 aa11.71□□□□□ -0.53
DDX55-211ENST00000544429 LGALS3P17931 250 aaKnown RBP11.7□□□□□ -0.54
DDX55-211ENST00000544429 UBE2BP63146 152 aa11.7□□□□□ -0.54
DDX55-211ENST00000544429 LINC00167Q96N53 147 aa11.7□□□□□ -0.54
DDX55-211ENST00000544429 A0A0U1RRA0 63 aa11.69□□□□□ -0.54
DDX55-211ENST00000544429 IGLV7-43P04211 117 aa11.69□□□□□ -0.54
DDX55-211ENST00000544429 MEIG1Q5JSS6 88 aa11.69□□□□□ -0.54
DDX55-211ENST00000544429 MIR7-3HGQ8N6C7 128 aa11.69□□□□□ -0.54
DDX55-211ENST00000544429 IGKV2D-26A0A0A0MRZ7 120 aa11.68□□□□□ -0.54
DDX55-211ENST00000544429 LOC107984156A0A0G2JMH3 177 aa11.68□□□□□ -0.54
DDX55-211ENST00000544429 S100A6P06703 90 aa11.68□□□□□ -0.54
DDX55-211ENST00000544429 ARL17AQ8IVW1 177 aa11.68□□□□□ -0.54
DDX55-211ENST00000544429 C20orf202A1L168 122 aa11.67□□□□□ -0.54
DDX55-211ENST00000544429 C5orf52A6NGY3 159 aa11.67□□□□□ -0.54
DDX55-211ENST00000544429 RPL24P83731 157 aaKnown RBP11.67□□□□□ -0.54
DDX55-211ENST00000544429 NKAPP1Q8N9T2 125 aa11.67□□□□□ -0.54
DDX55-211ENST00000544429 S100A2P29034 98 aa11.66□□□□□ -0.54
DDX55-211ENST00000544429 SNRPEP62304 92 aaKnown RBP11.66□□□□□ -0.54
DDX55-211ENST00000544429 A0A0J9YXY3 114 aa11.65□□□□□ -0.54
DDX55-211ENST00000544429 AKR1D1P51857 326 aa11.65□□□□□ -0.54
DDX55-211ENST00000544429 RPL37AP8A6NKH3 93 aa11.64□□□□□ -0.55
DDX55-211ENST00000544429 IGLV1-50A0A075B6I6 118 aa11.63□□□□□ -0.55
DDX55-211ENST00000544429 GAGE10A6NGK3 116 aa11.63□□□□□ -0.55
DDX55-211ENST00000544429 MT1HL1P0DM35 61 aa11.62□□□□□ -0.55
DDX55-211ENST00000544429 ANKRD39Q53RE8 183 aa11.62□□□□□ -0.55
DDX55-211ENST00000544429 DAND5Q8N907 189 aa11.62□□□□□ -0.55
DDX55-211ENST00000544429 ADAMTSL4-AS1Q5T5F5 129 aa11.61□□□□□ -0.55
DDX55-211ENST00000544429 BOD1L2Q8IYS8 172 aa11.61□□□□□ -0.55
DDX55-211ENST00000544429 ATOH7Q8N100 152 aa11.61□□□□□ -0.55
DDX55-211ENST00000544429 LITAFQ99732 161 aa11.61□□□□□ -0.55
DDX55-211ENST00000544429 TTTY13Q9BZ97 58 aa11.61□□□□□ -0.55
DDX55-211ENST00000544429 BCE1O60756 84 aa11.6□□□□□ -0.55
DDX55-211ENST00000544429 LINC01600Q96MT4 127 aa11.6□□□□□ -0.55
DDX55-211ENST00000544429 TNXBP22105 4242 aa11.6□□□□□ -0.55
DDX55-211ENST00000544429 HERC1Q15751 4861 aa11.59□□□□□ -0.55
DDX55-211ENST00000544429 J3QL48 77 aa11.59□□□□□ -0.55
DDX55-211ENST00000544429 TIMM17BO60830 172 aa11.59□□□□□ -0.55
DDX55-211ENST00000544429 IGKV2-28A0A075B6P5 120 aa11.58□□□□□ -0.56
DDX55-211ENST00000544429 ZNF815PA8K554 130 aa11.58□□□□□ -0.56
DDX55-211ENST00000544429 H0Y9J4 135 aa11.58□□□□□ -0.56
DDX55-211ENST00000544429 M0R378 163 aa11.58□□□□□ -0.56
DDX55-211ENST00000544429 ZNF861PO60384 105 aa11.58□□□□□ -0.56
DDX55-211ENST00000544429 IGKV2D-28P01615 120 aa11.58□□□□□ -0.56
DDX55-211ENST00000544429 REG3GQ6UW15 175 aa11.58□□□□□ -0.56
DDX55-211ENST00000544429 KRTAP13-1Q8IUC0 172 aa11.58□□□□□ -0.56
DDX55-211ENST00000544429 DIRC1Q969H9 104 aa11.58□□□□□ -0.56
DDX55-211ENST00000544429 EIF4EBP3O60516 100 aaPredicted RBP11.57□□□□□ -0.56
DDX55-211ENST00000544429 SOSTDC1Q6X4U4 206 aa11.57□□□□□ -0.56
DDX55-211ENST00000544429 NDUFC2O95298 119 aa11.55□□□□□ -0.56
DDX55-211ENST00000544429 TMEM126AQ9H061 195 aa11.55□□□□□ -0.56
DDX55-211ENST00000544429 TRBV10-2A0A0K0K1G8 114 aa11.53□□□□□ -0.56
DDX55-211ENST00000544429 TMEM238C9JI98 176 aa11.53□□□□□ -0.56
DDX55-211ENST00000544429 PCP2Q8IVA1 136 aa11.53□□□□□ -0.56
DDX55-211ENST00000544429 NCR3O14931 201 aa11.52□□□□□ -0.57
DDX55-211ENST00000544429 KRTAP1-4P0C5Y4 121 aa11.52□□□□□ -0.57
DDX55-211ENST00000544429 KRTAP10-8P60410 259 aa11.52□□□□□ -0.57
DDX55-211ENST00000544429 RPL28P46779 137 aaKnown RBP11.51□□□□□ -0.57
DDX55-211ENST00000544429 MIEN1Q9BRT3 115 aa11.51□□□□□ -0.57
DDX55-211ENST00000544429 KCNQ1DNQ9H478 68 aa11.51□□□□□ -0.57
DDX55-211ENST00000544429 SPRR1AP35321 89 aa11.5□□□□□ -0.57
DDX55-211ENST00000544429 LINC00308Q8TCZ7 52 aa11.5□□□□□ -0.57
DDX55-211ENST00000544429 SPANXB1Q9NS25 103 aaPredicted RBP11.5□□□□□ -0.57
DDX55-211ENST00000544429 TRBV10-3A0A0K0K1G6 114 aa11.48□□□□□ -0.57
DDX55-211ENST00000544429 KRTAP4-16G5E9R7 235 aaPredicted RBP11.48□□□□□ -0.57
DDX55-211ENST00000544429 PRYO14603 147 aa11.48□□□□□ -0.57
DDX55-211ENST00000544429 SPANXDQ9BXN6 97 aa11.48□□□□□ -0.57
DDX55-211ENST00000544429 SPANXCQ9NY87 97 aa11.48□□□□□ -0.57
DDX55-211ENST00000544429 IGLV6-57P01721 117 aa11.47□□□□□ -0.57
DDX55-211ENST00000544429 NPC2P61916 151 aa11.47□□□□□ -0.57
DDX55-211ENST00000544429 PPDPFQ9H3Y8 114 aa11.47□□□□□ -0.57
DDX55-211ENST00000544429 SCGB1D4Q6XE38 83 aa11.46□□□□□ -0.57
DDX55-211ENST00000544429 SCGB1D1O95968 90 aa11.45□□□□□ -0.58
DDX55-211ENST00000544429 UBE2AP49459 152 aa11.45□□□□□ -0.58
DDX55-211ENST00000544429 PRLHP81277 87 aa11.45□□□□□ -0.58
DDX55-211ENST00000544429 LINC00337Q8N6G1 96 aa11.45□□□□□ -0.58
DDX55-211ENST00000544429 HSBP1L1C9JCN9 74 aa11.44□□□□□ -0.58
DDX55-211ENST00000544429 FAM19A1Q7Z5A9 133 aa11.44□□□□□ -0.58
DDX55-211ENST00000544429 DDTP30046 118 aa11.43□□□□□ -0.58
DDX55-211ENST00000544429 Q6ZVH6 145 aa11.43□□□□□ -0.58
DDX55-211ENST00000544429 PRR26Q8N8Z3 221 aa11.41□□□□□ -0.58
DDX55-211ENST00000544429 IFITM1P13164 125 aa11.4□□□□□ -0.58
DDX55-211ENST00000544429 JOSD1Q15040 202 aaPredicted RBP11.4□□□□□ -0.58
DDX55-211ENST00000544429 S100A7L2Q5SY68 101 aa11.38□□□□□ -0.59
DDX55-211ENST00000544429 S100A12P80511 92 aa11.37□□□□□ -0.59
DDX55-211ENST00000544429 COPS9Q8WXC6 57 aa11.37□□□□□ -0.59
DDX55-211ENST00000544429 B5MCH6 92 aa11.36□□□□□ -0.59
DDX55-211ENST00000544429 COX8AP10176 69 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms