RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 LECT2O14960 151 aa9.61□□□□□ -0.87
CLIP1-216ENST00000541410 B9D2Q9BPU9 175 aa9.61□□□□□ -0.87
CLIP1-216ENST00000541410 CSMD3Q7Z407 3707 aa9.61□□□□□ -0.87
CLIP1-216ENST00000541410 J3QR89 54 aa9.6□□□□□ -0.87
CLIP1-216ENST00000541410 GAGE2EQ4V326 116 aa9.6□□□□□ -0.87
CLIP1-216ENST00000541410 GAGE2DQ9UEU5 116 aa9.6□□□□□ -0.87
CLIP1-216ENST00000541410 RPL18AQ02543 176 aaKnown RBP9.59□□□□□ -0.87
CLIP1-216ENST00000541410 GVQW2A0A096LPI5 108 aaPredicted RBP9.58□□□□□ -0.88
CLIP1-216ENST00000541410 NDUFC2O95298 119 aa9.58□□□□□ -0.88
CLIP1-216ENST00000541410 CBY1Q9Y3M2 126 aa9.58□□□□□ -0.88
CLIP1-216ENST00000541410 S100A7L2Q5SY68 101 aa9.58□□□□□ -0.88
CLIP1-216ENST00000541410 DNHD1Q96M86 4753 aa9.58□□□□□ -0.88
CLIP1-216ENST00000541410 H3BT86 120 aa9.57□□□□□ -0.88
CLIP1-216ENST00000541410 SLPIP03973 132 aa9.57□□□□□ -0.88
CLIP1-216ENST00000541410 KRTAP1-5Q9BYS1 174 aa9.56□□□□□ -0.88
CLIP1-216ENST00000541410 TMEM126AQ9H061 195 aa9.56□□□□□ -0.88
CLIP1-216ENST00000541410 PRKDCP78527 4128 aaKnown RBP9.56□□□□□ -0.88
CLIP1-216ENST00000541410 DNAH7Q8WXX0 4024 aa9.56□□□□□ -0.88
CLIP1-216ENST00000541410 TRACP01848 142 aa9.56□□□□□ -0.88
CLIP1-216ENST00000541410 BAALC-AS2P0C853 105 aa9.56□□□□□ -0.88
CLIP1-216ENST00000541410 USP17L23D6RBM5 183 aa9.55□□□□□ -0.88
CLIP1-216ENST00000541410 M0QXV9 152 aa9.55□□□□□ -0.88
CLIP1-216ENST00000541410 SYCNQ0VAF6 134 aa9.55□□□□□ -0.88
CLIP1-216ENST00000541410 C6orf99Q4VX62 202 aa9.55□□□□□ -0.88
CLIP1-216ENST00000541410 Q6ZRP5 223 aa9.55□□□□□ -0.88
CLIP1-216ENST00000541410 UBE2DNLQ8IWF7 75 aa9.54□□□□□ -0.88
CLIP1-216ENST00000541410 C2orf48Q96LS8 159 aa9.54□□□□□ -0.88
CLIP1-216ENST00000541410 UPK3BQ9BT76 320 aa9.53□□□□□ -0.88
CLIP1-216ENST00000541410 APLNQ9ULZ1 77 aa9.53□□□□□ -0.88
CLIP1-216ENST00000541410 DNAL4O96015 105 aa9.53□□□□□ -0.88
CLIP1-216ENST00000541410 A0A1B0GV72 72 aa9.52□□□□□ -0.88
CLIP1-216ENST00000541410 NDUFC2-KCTD14E9PQ53 114 aa9.52□□□□□ -0.88
CLIP1-216ENST00000541410 H0YGX0 51 aa9.52□□□□□ -0.88
CLIP1-216ENST00000541410 TRBV10-3A0A0K0K1G6 114 aa9.52□□□□□ -0.89
CLIP1-216ENST00000541410 C22orf24Q9Y442 160 aa9.52□□□□□ -0.89
CLIP1-216ENST00000541410 DNAH10Q8IVF4 4471 aa9.52□□□□□ -0.89
CLIP1-216ENST00000541410 DNAH1Q9P2D7 4330 aa9.51□□□□□ -0.89
CLIP1-216ENST00000541410 LINC01600Q96MT4 127 aa9.51□□□□□ -0.89
CLIP1-216ENST00000541410 CDIP1Q9H305 208 aa9.51□□□□□ -0.89
CLIP1-216ENST00000541410 MEGF8Q7Z7M0 2845 aa9.51□□□□□ -0.89
CLIP1-216ENST00000541410 C9orf129Q5T035 196 aaKnown RBP9.5□□□□□ -0.89
CLIP1-216ENST00000541410 MUC7Q8TAX7 377 aa9.5□□□□□ -0.89
CLIP1-216ENST00000541410 IGLV6-57P01721 117 aa9.49□□□□□ -0.89
CLIP1-216ENST00000541410 VPREB1P12018 145 aa9.49□□□□□ -0.89
CLIP1-216ENST00000541410 C21orf62-AS1Q17RA5 79 aa9.48□□□□□ -0.89
CLIP1-216ENST00000541410 RMI2Q96E14 147 aa9.47□□□□□ -0.89
CLIP1-216ENST00000541410 PCP4P48539 62 aa9.46□□□□□ -0.89
CLIP1-216ENST00000541410 Q8N814 137 aa9.46□□□□□ -0.9
CLIP1-216ENST00000541410 PLECQ15149 4684 aaKnown RBP9.46□□□□□ -0.9
CLIP1-216ENST00000541410 SERTAD4-AS1Q5TG53 156 aa9.45□□□□□ -0.9
CLIP1-216ENST00000541410 TRAV23DV6A0A075B6W5 121 aa9.45□□□□□ -0.9
CLIP1-216ENST00000541410 FAM168BA1KXE4 195 aa9.45□□□□□ -0.9
CLIP1-216ENST00000541410 SIGMAR1Q99720 223 aa9.45□□□□□ -0.9
CLIP1-216ENST00000541410 STARD9Q9P2P6 4700 aa9.45□□□□□ -0.9
CLIP1-216ENST00000541410 PSCAO43653 123 aa9.44□□□□□ -0.9
CLIP1-216ENST00000541410 XGP55808 180 aa9.44□□□□□ -0.9
CLIP1-216ENST00000541410 NHLRC4P0CG21 123 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-216ENST00000541410 GAGE2BQ13066 116 aa9.44□□□□□ -0.9
CLIP1-216ENST00000541410 MT-ATP8P03928 68 aa9.43□□□□□ -0.9
CLIP1-216ENST00000541410 ORMDL1Q9P0S3 153 aa9.43□□□□□ -0.9
CLIP1-216ENST00000541410 LINC00575Q6W349 94 aa9.42□□□□□ -0.9
CLIP1-216ENST00000541410 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-216ENST00000541410 ZNF73O43830 326 aaPredicted RBP9.42□□□□□ -0.9
CLIP1-216ENST00000541410 C14orf132Q9NPU4 83 aa9.42□□□□□ -0.9
CLIP1-216ENST00000541410 NUPR2A6NF83 97 aa9.41□□□□□ -0.9
CLIP1-216ENST00000541410 M0R378 163 aa9.41□□□□□ -0.9
CLIP1-216ENST00000541410 F8WDY8 70 aa9.41□□□□□ -0.9
CLIP1-216ENST00000541410 M0R2N4 97 aa9.41□□□□□ -0.9
CLIP1-216ENST00000541410 DIRC1Q969H9 104 aa9.41□□□□□ -0.9
CLIP1-216ENST00000541410 RPL37AP8A6NKH3 93 aa9.39□□□□□ -0.91
CLIP1-216ENST00000541410 NKAPP1Q8N9T2 125 aa9.39□□□□□ -0.91
CLIP1-216ENST00000541410 DYNC2H1Q8NCM8 4307 aaKnown RBP9.39□□□□□ -0.91
CLIP1-216ENST00000541410 hADV29S1A0JD25 119 aa9.39□□□□□ -0.91
CLIP1-216ENST00000541410 C7orf33Q8WU49 177 aa9.38□□□□□ -0.91
CLIP1-216ENST00000541410 GAGE2AQ6NT46 116 aa9.37□□□□□ -0.91
CLIP1-216ENST00000541410 FAM19A5Q7Z5A7 132 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-216ENST00000541410 KRTAP7-1Q8IUC3 87 aa9.37□□□□□ -0.91
CLIP1-216ENST00000541410 LINC00167Q96N53 147 aa9.37□□□□□ -0.91
CLIP1-216ENST00000541410 TLX1NBP0CAT3 122 aa9.37□□□□□ -0.91
CLIP1-216ENST00000541410 Q6ZQY7 126 aa9.37□□□□□ -0.91
CLIP1-216ENST00000541410 TTC32Q5I0X7 151 aa9.36□□□□□ -0.91
CLIP1-216ENST00000541410 TGP01266 2768 aa9.36□□□□□ -0.91
CLIP1-216ENST00000541410 IGKV2-24A0A0C4DH68 120 aa9.36□□□□□ -0.91
CLIP1-216ENST00000541410 NBDYA0A0U1RRE5 68 aa9.36□□□□□ -0.91
CLIP1-216ENST00000541410 COX7BP24311 80 aa9.36□□□□□ -0.91
CLIP1-216ENST00000541410 A0A1B0GX51 115 aa9.35□□□□□ -0.91
CLIP1-216ENST00000541410 SNCGO76070 127 aa9.34□□□□□ -0.91
CLIP1-216ENST00000541410 INAFM2P0DMQ5 153 aa9.34□□□□□ -0.91
CLIP1-216ENST00000541410 ELOF1P60002 83 aaKnown RBP9.34□□□□□ -0.91
CLIP1-216ENST00000541410 LOC107984640A0A0U1RRK4 108 aa9.33□□□□□ -0.92
CLIP1-216ENST00000541410 TMEM256-PLSCR3K7ERE1 68 aa9.33□□□□□ -0.92
CLIP1-216ENST00000541410 A0A096LNI7 61 aa9.32□□□□□ -0.92
CLIP1-216ENST00000541410 FBN3Q75N90 2809 aa9.32□□□□□ -0.92
CLIP1-216ENST00000541410 OBSCN-AS1Q96MR7 158 aa9.32□□□□□ -0.92
CLIP1-216ENST00000541410 SMCR5Q8TEV8 140 aa9.31□□□□□ -0.92
CLIP1-216ENST00000541410 KMT2AQ03164 3969 aa9.31□□□□□ -0.92
CLIP1-216ENST00000541410 FAM240AA0A1B0GVK7 77 aa9.3□□□□□ -0.92
CLIP1-216ENST00000541410 FUSP35637 526 aaKnown RBP eCLIP9.3□□□□□ -0.92
CLIP1-216ENST00000541410 CHTF8P0CG12 524 aa9.3□□□□□ -0.92
CLIP1-216ENST00000541410 LINC00528Q8N1L1 170 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms