RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 C22orf24Q9Y442 160 aa5.69□□□□□ -1.5
SNHG1-215ENST00000540904 SPINK6Q6UWN8 80 aa5.68□□□□□ -1.5
SNHG1-215ENST00000540904 MYCBP2O75592 4640 aa5.67□□□□□ -1.5
SNHG1-215ENST00000540904 DPM2O94777 84 aa5.67□□□□□ -1.5
SNHG1-215ENST00000540904 SRSF9Q13242 221 aaKnown RBP eCLIP5.67□□□□□ -1.5
SNHG1-215ENST00000540904 COX17Q14061 63 aa5.67□□□□□ -1.5
SNHG1-215ENST00000540904 LBHQ53QV2 105 aaPredicted RBP5.67□□□□□ -1.5
SNHG1-215ENST00000540904 LCE1DQ5T752 114 aa5.67□□□□□ -1.5
SNHG1-215ENST00000540904 MRPL55Q7Z7F7 128 aaKnown RBP5.67□□□□□ -1.5
SNHG1-215ENST00000540904 SND1-IT1Q9HBX3 110 aa5.67□□□□□ -1.5
SNHG1-215ENST00000540904 A0A0U1RRA0 63 aa5.66□□□□□ -1.5
SNHG1-215ENST00000540904 IGKCP01834 107 aa5.66□□□□□ -1.5
SNHG1-215ENST00000540904 LINC00158P58513 81 aa5.66□□□□□ -1.5
SNHG1-215ENST00000540904 KRTAP4-7Q9BYR0 210 aa5.66□□□□□ -1.5
SNHG1-215ENST00000540904 DMBT1Q9UGM3 2413 aaPredicted RBP5.66□□□□□ -1.5
SNHG1-215ENST00000540904 GAGE10A6NGK3 116 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 RPL37AP8A6NKH3 93 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 SYS1-DBNDD2H3BUS1 97 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 IGLV7-43P04211 117 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 HERVK_113P61574 105 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 MEIG1Q5JSS6 88 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 NKAPP1Q8N9T2 125 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 TP73-AS1Q9UF72 201 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 NDUFA12Q9UI09 145 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 PLA2G2DQ9UNK4 145 aa5.65□□□□□ -1.5
SNHG1-215ENST00000540904 MYMXA0A1B0GTQ4 84 aa5.64□□□□□ -1.51
SNHG1-215ENST00000540904 LEPROTO15243 131 aa5.64□□□□□ -1.51
SNHG1-215ENST00000540904 TSPEAR-AS2P59090 65 aa5.64□□□□□ -1.51
SNHG1-215ENST00000540904 HERV-K104P63124 156 aa5.64□□□□□ -1.51
SNHG1-215ENST00000540904 COA6Q5JTJ3 125 aaKnown RBP5.64□□□□□ -1.51
SNHG1-215ENST00000540904 REG3GQ6UW15 175 aa5.64□□□□□ -1.51
SNHG1-215ENST00000540904 PLEKHB2Q96CS7 222 aa5.64□□□□□ -1.51
SNHG1-215ENST00000540904 LINC00167Q96N53 147 aa5.64□□□□□ -1.51
SNHG1-215ENST00000540904 IGLV5-37A0A075B6J1 123 aa5.63□□□□□ -1.51
SNHG1-215ENST00000540904 J3QQQ9 107 aa5.63□□□□□ -1.51
SNHG1-215ENST00000540904 SMIM13P0DJ93 91 aa5.63□□□□□ -1.51
SNHG1-215ENST00000540904 MT1HL1P0DM35 61 aa5.63□□□□□ -1.51
SNHG1-215ENST00000540904 RPL24P83731 157 aaKnown RBP5.63□□□□□ -1.51
SNHG1-215ENST00000540904 LINC00587B1AMM8 73 aa5.62□□□□□ -1.51
SNHG1-215ENST00000540904 VPREB1P12018 145 aa5.62□□□□□ -1.51
SNHG1-215ENST00000540904 LGALS3P17931 250 aaKnown RBP5.62□□□□□ -1.51
SNHG1-215ENST00000540904 KRTDAPP60985 99 aa5.62□□□□□ -1.51
SNHG1-215ENST00000540904 LINC01545Q5VT33 79 aa5.62□□□□□ -1.51
SNHG1-215ENST00000540904 MIR7-3HGQ8N6C7 128 aa5.62□□□□□ -1.51
SNHG1-215ENST00000540904 Q8NDZ9 215 aa5.62□□□□□ -1.51
SNHG1-215ENST00000540904 DIRC1Q969H9 104 aa5.62□□□□□ -1.51
SNHG1-215ENST00000540904 LINC01600Q96MT4 127 aa5.62□□□□□ -1.51
SNHG1-215ENST00000540904 IGKV2-28A0A075B6P5 120 aa5.61□□□□□ -1.51
SNHG1-215ENST00000540904 IGKV2D-28P01615 120 aa5.61□□□□□ -1.51
SNHG1-215ENST00000540904 C3orf79P0CE67 100 aa5.61□□□□□ -1.51
SNHG1-215ENST00000540904 PET117Q6UWS5 81 aa5.61□□□□□ -1.51
SNHG1-215ENST00000540904 E9PLD3 99 aa5.6□□□□□ -1.51
SNHG1-215ENST00000540904 H0Y9J4 135 aa5.6□□□□□ -1.51
SNHG1-215ENST00000540904 BCE1O60756 84 aa5.6□□□□□ -1.51
SNHG1-215ENST00000540904 NMUP48645 174 aa5.6□□□□□ -1.51
SNHG1-215ENST00000540904 BOD1L2Q8IYS8 172 aa5.6□□□□□ -1.51
SNHG1-215ENST00000540904 ZNF861PO60384 105 aa5.59□□□□□ -1.51
SNHG1-215ENST00000540904 DAND5Q8N907 189 aa5.59□□□□□ -1.51
SNHG1-215ENST00000540904 LRP1Q07954 4544 aaKnown RBP5.59□□□□□ -1.51
SNHG1-215ENST00000540904 IGLV1-50A0A075B6I6 118 aa5.58□□□□□ -1.52
SNHG1-215ENST00000540904 C20orf202A1L168 122 aa5.58□□□□□ -1.52
SNHG1-215ENST00000540904 RPL28P46779 137 aaKnown RBP5.58□□□□□ -1.52
SNHG1-215ENST00000540904 LOC105371267A0A1B0GV96 52 aa5.57□□□□□ -1.52
SNHG1-215ENST00000540904 TMEM238C9JI98 176 aa5.57□□□□□ -1.52
SNHG1-215ENST00000540904 M0R378 163 aa5.57□□□□□ -1.52
SNHG1-215ENST00000540904 NCR3O14931 201 aa5.57□□□□□ -1.52
SNHG1-215ENST00000540904 UBE2AP49459 152 aa5.57□□□□□ -1.52
SNHG1-215ENST00000540904 A0A0J9YXY3 114 aa5.56□□□□□ -1.52
SNHG1-215ENST00000540904 GHRHP01286 108 aa5.56□□□□□ -1.52
SNHG1-215ENST00000540904 S100A6P06703 90 aa5.56□□□□□ -1.52
SNHG1-215ENST00000540904 S100A2P29034 98 aa5.56□□□□□ -1.52
SNHG1-215ENST00000540904 KRTAP10-8P60410 259 aa5.56□□□□□ -1.52
SNHG1-215ENST00000540904 ATOH7Q8N100 152 aa5.56□□□□□ -1.52
SNHG1-215ENST00000540904 HIST3H2BBQ8N257 126 aa5.56□□□□□ -1.52
SNHG1-215ENST00000540904 MIEN1Q9BRT3 115 aa5.56□□□□□ -1.52
SNHG1-215ENST00000540904 TMEM126AQ9H061 195 aa5.56□□□□□ -1.52
SNHG1-215ENST00000540904 IGKV2D-26A0A0A0MRZ7 120 aa5.55□□□□□ -1.52
SNHG1-215ENST00000540904 ZNF815PA8K554 130 aa5.55□□□□□ -1.52
SNHG1-215ENST00000540904 KRTAP1-4P0C5Y4 121 aa5.55□□□□□ -1.52
SNHG1-215ENST00000540904 PRR26Q8N8Z3 221 aa5.55□□□□□ -1.52
SNHG1-215ENST00000540904 HIST1H2BLQ99880 126 aa5.55□□□□□ -1.52
SNHG1-215ENST00000540904 TTTY13Q9BZ97 58 aa5.55□□□□□ -1.52
SNHG1-215ENST00000540904 HERC1Q15751 4861 aa5.55□□□□□ -1.52
SNHG1-215ENST00000540904 PKHD1L1Q86WI1 4243 aa5.54□□□□□ -1.52
SNHG1-215ENST00000540904 NPC2P61916 151 aa5.54□□□□□ -1.52
SNHG1-215ENST00000540904 PRLHP81277 87 aa5.54□□□□□ -1.52
SNHG1-215ENST00000540904 ADAMTSL4-AS1Q5T5F5 129 aa5.54□□□□□ -1.52
SNHG1-215ENST00000540904 FAM19A1Q7Z5A9 133 aa5.54□□□□□ -1.52
SNHG1-215ENST00000540904 KRTAP13-1Q8IUC0 172 aa5.54□□□□□ -1.52
SNHG1-215ENST00000540904 LOC107984156A0A0G2JMH3 177 aa5.53□□□□□ -1.52
SNHG1-215ENST00000540904 ARL17AQ8IVW1 177 aa5.53□□□□□ -1.52
SNHG1-215ENST00000540904 FAT3Q8TDW7 4589 aa5.52□□□□□ -1.53
SNHG1-215ENST00000540904 TRBV10-3A0A0K0K1G6 114 aa5.52□□□□□ -1.53
SNHG1-215ENST00000540904 EIF4EBP3O60516 100 aaPredicted RBP5.52□□□□□ -1.53
SNHG1-215ENST00000540904 AKR1D1P51857 326 aa5.52□□□□□ -1.53
SNHG1-215ENST00000540904 ANKRD39Q53RE8 183 aa5.52□□□□□ -1.53
SNHG1-215ENST00000540904 SOSTDC1Q6X4U4 206 aa5.52□□□□□ -1.53
SNHG1-215ENST00000540904 LITAFQ99732 161 aa5.52□□□□□ -1.53
SNHG1-215ENST00000540904 SPANXB1Q9NS25 103 aaPredicted RBP5.52□□□□□ -1.53
SNHG1-215ENST00000540904 TRBV10-2A0A0K0K1G8 114 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms