RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MXRA5Q9NR99 2828 aa8.87□□□□□ -0.99
SFSWAP-209ENST00000540469 Q8N3U1 123 aa8.87□□□□□ -0.99
SFSWAP-209ENST00000540469 ANGP03950 147 aaKnown RBP8.87□□□□□ -0.99
SFSWAP-209ENST00000540469 LINC00575Q6W349 94 aa8.87□□□□□ -0.99
SFSWAP-209ENST00000540469 LYPD5Q6UWN5 251 aa8.86□□□□□ -0.99
SFSWAP-209ENST00000540469 SMIM26A0A096LP01 95 aa8.86□□□□□ -0.99
SFSWAP-209ENST00000540469 PLAC8L1A1L4L8 177 aa8.84□□□□□ -0.99
SFSWAP-209ENST00000540469 FP248Q71RG6 208 aaPredicted RBP8.84□□□□□ -0.99
SFSWAP-209ENST00000540469 CHCHD10Q8WYQ3 142 aaPredicted RBP8.84□□□□□ -0.99
SFSWAP-209ENST00000540469 J3QKU1 62 aa8.84□□□□□ -0.99
SFSWAP-209ENST00000540469 LINC00482Q8N8I6 264 aa8.84□□□□□ -0.99
SFSWAP-209ENST00000540469 SEC61GP60059 68 aa8.83□□□□□ -1
SFSWAP-209ENST00000540469 KLKP1Q107X0 134 aa8.83□□□□□ -1
SFSWAP-209ENST00000540469 TM2D3Q9BRN9 247 aa8.83□□□□□ -1
SFSWAP-209ENST00000540469 COX17Q14061 63 aa8.82□□□□□ -1
SFSWAP-209ENST00000540469 GIG44P09565 113 aaPredicted RBP8.82□□□□□ -1
SFSWAP-209ENST00000540469 ESM1Q9NQ30 184 aa8.81□□□□□ -1
SFSWAP-209ENST00000540469 TRBV7-6A0A0J9YX20 115 aa8.81□□□□□ -1
SFSWAP-209ENST00000540469 PDE6GP18545 87 aa8.81□□□□□ -1
SFSWAP-209ENST00000540469 CMC4P56277 68 aaPredicted RBP8.81□□□□□ -1
SFSWAP-209ENST00000540469 CD164L2Q6UWJ8 174 aa8.81□□□□□ -1
SFSWAP-209ENST00000540469 LOC110117498A0A087WWA1 95 aa8.81□□□□□ -1
SFSWAP-209ENST00000540469 BCE1O60756 84 aa8.81□□□□□ -1
SFSWAP-209ENST00000540469 MIFP14174 115 aa8.81□□□□□ -1
SFSWAP-209ENST00000540469 NF1P21359 2839 aa8.81□□□□□ -1
SFSWAP-209ENST00000540469 ZNF469Q96JG9 3925 aaPredicted RBP8.81□□□□□ -1
SFSWAP-209ENST00000540469 IGHV4-31P0DP07 118 aa8.8□□□□□ -1
SFSWAP-209ENST00000540469 C1orf195Q5TG92 126 aa8.8□□□□□ -1
SFSWAP-209ENST00000540469 C6orf223Q8N319 242 aa8.8□□□□□ -1
SFSWAP-209ENST00000540469 SPAG11BQ08648 103 aa8.8□□□□□ -1
SFSWAP-209ENST00000540469 UNQ6190/PRO20217Q6UXQ8 127 aa8.8□□□□□ -1
SFSWAP-209ENST00000540469 MUC7Q8TAX7 377 aa8.8□□□□□ -1
SFSWAP-209ENST00000540469 V9GYY9 64 aa8.8□□□□□ -1
SFSWAP-209ENST00000540469 REG3AQ06141 175 aa8.79□□□□□ -1
SFSWAP-209ENST00000540469 NREPQ16612 68 aa8.79□□□□□ -1
SFSWAP-209ENST00000540469 LINC01006Q8NI28 216 aa8.79□□□□□ -1
SFSWAP-209ENST00000540469 NBEAL2Q6ZNJ1 2754 aa8.79□□□□□ -1
SFSWAP-209ENST00000540469 NDUFC1O43677 76 aa8.79□□□□□ -1
SFSWAP-209ENST00000540469 A0A1B0GUV1 79 aa8.79□□□□□ -1
SFSWAP-209ENST00000540469 CXCL6P80162 114 aa8.79□□□□□ -1
SFSWAP-209ENST00000540469 Q8NDZ9 215 aa8.79□□□□□ -1
SFSWAP-209ENST00000540469 DIRC1Q969H9 104 aa8.78□□□□□ -1
SFSWAP-209ENST00000540469 NIPBLQ6KC79 2804 aaeCLIP8.78□□□□□ -14e-13■□□□□ 8.8
SFSWAP-209ENST00000540469 KIAA0087Q14695 138 aa8.78□□□□□ -1
SFSWAP-209ENST00000540469 SPATA3Q8NHX4 192 aa8.78□□□□□ -1
SFSWAP-209ENST00000540469 XAGE1AQ9HD64 81 aa8.78□□□□□ -1
SFSWAP-209ENST00000540469 LRCOL1A6NCL2 159 aa8.77□□□□□ -1
SFSWAP-209ENST00000540469 HIVEP2P31629 2446 aa8.77□□□□□ -1.01
SFSWAP-209ENST00000540469 DAD1P61803 113 aa8.77□□□□□ -1.01
SFSWAP-209ENST00000540469 C16orf95Q9H693 158 aa8.77□□□□□ -1.01
SFSWAP-209ENST00000540469 PRO0255Q9UI72 69 aa8.77□□□□□ -1.01
SFSWAP-209ENST00000540469 BAHCC1Q9P281 2608 aa8.77□□□□□ -1.01
SFSWAP-209ENST00000540469 Q8N9L7 120 aa8.77□□□□□ -1.01
SFSWAP-209ENST00000540469 CR1P17927 2039 aa8.77□□□□□ -1.01
SFSWAP-209ENST00000540469 F8WDY8 70 aa8.76□□□□□ -1.01
SFSWAP-209ENST00000540469 BPY2O14599 106 aa8.76□□□□□ -1.01
SFSWAP-209ENST00000540469 C10orf25Q5T742 122 aa8.76□□□□□ -1.01
SFSWAP-209ENST00000540469 TMEM254Q8TBM7 123 aa8.76□□□□□ -1.01
SFSWAP-209ENST00000540469 FAM229BQ4G0N7 80 aa8.75□□□□□ -1.01
SFSWAP-209ENST00000540469 FSHBP01225 129 aa8.75□□□□□ -1.01
SFSWAP-209ENST00000540469 DEFB4AO15263 64 aa8.74□□□□□ -1.01
SFSWAP-209ENST00000540469 PRB2P02812 416 aaPredicted RBP8.74□□□□□ -1.01
SFSWAP-209ENST00000540469 HTN3P15516 51 aa8.74□□□□□ -1.01
SFSWAP-209ENST00000540469 CYSRT1A8MQ03 144 aa8.74□□□□□ -1.01
SFSWAP-209ENST00000540469 COX7BP24311 80 aa8.74□□□□□ -1.01
SFSWAP-209ENST00000540469 ATP5EP56381 51 aaPredicted RBP8.74□□□□□ -1.01
SFSWAP-209ENST00000540469 CSNK1G2-AS1Q8NCQ2 148 aa8.73□□□□□ -1.01
SFSWAP-209ENST00000540469 F8P00451 2351 aa8.72□□□□□ -1.01
SFSWAP-209ENST00000540469 H3BQ85 93 aa8.72□□□□□ -1.01
SFSWAP-209ENST00000540469 EPM2AB3EWF7 344 aa8.72□□□□□ -1.01
SFSWAP-209ENST00000540469 IGHV4-28A0A0C4DH34 117 aa8.72□□□□□ -1.01
SFSWAP-209ENST00000540469 DNAJC9-AS1A6NH13 148 aa8.72□□□□□ -1.01
SFSWAP-209ENST00000540469 ZNF73O43830 326 aaPredicted RBP8.71□□□□□ -1.01
SFSWAP-209ENST00000540469 TRBV7-4A0A0J9YYF1 115 aa8.71□□□□□ -1.02
SFSWAP-209ENST00000540469 FUSP35637 526 aaKnown RBP eCLIP8.71□□□□□ -1.02
SFSWAP-209ENST00000540469 C9orf66Q5T8R8 295 aa8.71□□□□□ -1.02
SFSWAP-209ENST00000540469 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.71□□□□□ -1.02
SFSWAP-209ENST00000540469 KLK12Q9UKR0 248 aa8.7□□□□□ -1.02
SFSWAP-209ENST00000540469 IGLV6-57P01721 117 aa8.7□□□□□ -1.02
SFSWAP-209ENST00000540469 C3orf84H3BNL1 204 aa8.7□□□□□ -1.02
SFSWAP-209ENST00000540469 OTOGQ6ZRI0 2925 aa8.69□□□□□ -1.02
SFSWAP-209ENST00000540469 PRYO14603 147 aa8.69□□□□□ -1.02
SFSWAP-209ENST00000540469 IGLV1-51P01701 117 aa8.69□□□□□ -1.02
SFSWAP-209ENST00000540469 SMR3AQ99954 134 aa8.68□□□□□ -1.02
SFSWAP-209ENST00000540469 DEFB105AQ8NG35 78 aa8.67□□□□□ -1.02
SFSWAP-209ENST00000540469 C19orf73Q9NVV2 129 aa8.67□□□□□ -1.02
SFSWAP-209ENST00000540469 MAST4O15021 2626 aa8.67□□□□□ -1.02
SFSWAP-209ENST00000540469 HIGD2BQ4VC39 106 aa8.67□□□□□ -1.02
SFSWAP-209ENST00000540469 ATRQ13535 2644 aa8.66□□□□□ -1.02
SFSWAP-209ENST00000540469 HIGD2AQ9BW72 106 aa8.65□□□□□ -1.02
SFSWAP-209ENST00000540469 CELA1Q9UNI1 258 aa8.65□□□□□ -1.02
SFSWAP-209ENST00000540469 DEFB113Q30KQ7 82 aa8.65□□□□□ -1.02
SFSWAP-209ENST00000540469 HIVEP1P15822 2718 aa8.65□□□□□ -1.03
SFSWAP-209ENST00000540469 ESRGQ1W209 222 aa8.64□□□□□ -1.03
SFSWAP-209ENST00000540469 DEFB135Q30KP9 77 aa8.64□□□□□ -1.03
SFSWAP-209ENST00000540469 CAMK2N2Q96S95 79 aa8.64□□□□□ -1.03
SFSWAP-209ENST00000540469 PDZD2O15018 2839 aa8.63□□□□□ -1.03
SFSWAP-209ENST00000540469 A0A0J9YWU9 116 aa8.63□□□□□ -1.03
SFSWAP-209ENST00000540469 IGHV4-30-4P0DP06 118 aa8.63□□□□□ -1.03
SFSWAP-209ENST00000540469 FAM30AQ9NZY2 134 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms