RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SMCO4Q9NRQ5 59 aa7.69□□□□□ -1.18
SS18-204ENST00000539244 A0A096LNJ9 63 aa7.68□□□□□ -1.18
SS18-204ENST00000539244 COX19Q49B96 90 aa7.68□□□□□ -1.18
SS18-204ENST00000539244 ZNF625Q96I27 306 aaPredicted RBP7.68□□□□□ -1.18
SS18-204ENST00000539244 ZNF706Q9Y5V0 76 aaPredicted RBP7.68□□□□□ -1.18
SS18-204ENST00000539244 C4orf48Q5BLP8 95 aa7.67□□□□□ -1.18
SS18-204ENST00000539244 LINC00337Q8N6G1 96 aa7.67□□□□□ -1.18
SS18-204ENST00000539244 S100PP25815 95 aa7.65□□□□□ -1.18
SS18-204ENST00000539244 NDUFA6P56556 154 aa7.65□□□□□ -1.18
SS18-204ENST00000539244 Q8NBF4 154 aa7.65□□□□□ -1.18
SS18-204ENST00000539244 C11orf86A6NJI1 115 aa7.64□□□□□ -1.19
SS18-204ENST00000539244 PRYO14603 147 aa7.64□□□□□ -1.19
SS18-204ENST00000539244 SPINK1P00995 79 aa7.64□□□□□ -1.19
SS18-204ENST00000539244 SPRR1AP35321 89 aa7.64□□□□□ -1.19
SS18-204ENST00000539244 CLLU1Q5K131 121 aa7.64□□□□□ -1.19
SS18-204ENST00000539244 UQCC3Q6UW78 93 aa7.64□□□□□ -1.19
SS18-204ENST00000539244 KRTAP4-1Q9BYQ7 146 aa7.64□□□□□ -1.19
SS18-204ENST00000539244 TMEM218A2RU14 115 aa7.63□□□□□ -1.19
SS18-204ENST00000539244 LINC01547P58512 204 aaPredicted RBP7.63□□□□□ -1.19
SS18-204ENST00000539244 FABP9Q0Z7S8 132 aa7.63□□□□□ -1.19
SS18-204ENST00000539244 DAND5Q8N907 189 aa7.63□□□□□ -1.19
SS18-204ENST00000539244 URB1-AS1Q96HZ7 61 aa7.63□□□□□ -1.19
SS18-204ENST00000539244 KRTAP4-16G5E9R7 235 aaPredicted RBP7.62□□□□□ -1.19
SS18-204ENST00000539244 HBDP02042 147 aa7.62□□□□□ -1.19
SS18-204ENST00000539244 LINC00158P58513 81 aa7.62□□□□□ -1.19
SS18-204ENST00000539244 SEC61BP60468 96 aaKnown RBP7.62□□□□□ -1.19
SS18-204ENST00000539244 LINC00483Q53H64 154 aa7.62□□□□□ -1.19
SS18-204ENST00000539244 TMEM170BQ5T4T1 132 aa7.62□□□□□ -1.19
SS18-204ENST00000539244 KCNQ1DNQ9H478 68 aa7.62□□□□□ -1.19
SS18-204ENST00000539244 LINC00614P0C842 121 aa7.61□□□□□ -1.19
SS18-204ENST00000539244 RPS29P62273 56 aaKnown RBP7.61□□□□□ -1.19
SS18-204ENST00000539244 BAGE3Q86Y29 109 aa7.61□□□□□ -1.19
SS18-204ENST00000539244 C18orf32Q8TCD1 76 aa7.6□□□□□ -1.19
SS18-204ENST00000539244 SMCR5Q8TEV8 140 aa7.6□□□□□ -1.19
SS18-204ENST00000539244 SEC11CQ9BY50 192 aa7.6□□□□□ -1.19
SS18-204ENST00000539244 A0A0U1RRA0 63 aa7.58□□□□□ -1.2
SS18-204ENST00000539244 TMEM223A0PJW6 202 aa7.58□□□□□ -1.2
SS18-204ENST00000539244 LCE2BO14633 110 aa7.58□□□□□ -1.2
SS18-204ENST00000539244 BOD1L2Q8IYS8 172 aa7.58□□□□□ -1.2
SS18-204ENST00000539244 FAM19A2Q8N3H0 131 aa7.58□□□□□ -1.2
SS18-204ENST00000539244 ETDCA0A1B0GVM5 59 aa7.57□□□□□ -1.2
SS18-204ENST00000539244 SMIM13P0DJ93 91 aa7.57□□□□□ -1.2
SS18-204ENST00000539244 PMCHL1Q16048 86 aa7.57□□□□□ -1.2
SS18-204ENST00000539244 Q8N377 158 aa7.57□□□□□ -1.2
SS18-204ENST00000539244 NDUFA12Q9UI09 145 aa7.57□□□□□ -1.2
SS18-204ENST00000539244 CHTOPQ9Y3Y2 248 aaKnown RBP7.57□□□□□ -1.2
SS18-204ENST00000539244 NCR3O14931 201 aa7.56□□□□□ -1.2
SS18-204ENST00000539244 SSBP3-AS1Q7Z2R9 100 aa7.56□□□□□ -1.2
SS18-204ENST00000539244 TRBV10-3A0A0K0K1G6 114 aa7.55□□□□□ -1.2
SS18-204ENST00000539244 XP32Q5T750 250 aa7.55□□□□□ -1.2
SS18-204ENST00000539244 MIR7-3HGQ8N6C7 128 aa7.55□□□□□ -1.2
SS18-204ENST00000539244 TRAV12-1A0A0B4J245 112 aa7.54□□□□□ -1.2
SS18-204ENST00000539244 ATP6V1G1O75348 118 aa7.54□□□□□ -1.2
SS18-204ENST00000539244 HERV-K104P63124 156 aa7.54□□□□□ -1.2
SS18-204ENST00000539244 MOBPQ13875 183 aa7.54□□□□□ -1.2
SS18-204ENST00000539244 RHEBQ15382 184 aa7.54□□□□□ -1.2
SS18-204ENST00000539244 GAGE2AQ6NT46 116 aa7.54□□□□□ -1.2
SS18-204ENST00000539244 TRAPPC1Q9Y5R8 145 aa7.54□□□□□ -1.2
SS18-204ENST00000539244 LINC00587B1AMM8 73 aa7.53□□□□□ -1.2
SS18-204ENST00000539244 B5MCH6 92 aa7.53□□□□□ -1.2
SS18-204ENST00000539244 SLC25A20O43772 301 aa7.53□□□□□ -1.2
SS18-204ENST00000539244 MEIG1Q5JSS6 88 aa7.53□□□□□ -1.2
SS18-204ENST00000539244 C10orf91Q5T1B1 145 aa7.53□□□□□ -1.2
SS18-204ENST00000539244 CRCT1Q9UGL9 99 aa7.53□□□□□ -1.2
SS18-204ENST00000539244 ERC2-IT1O76042 136 aa7.52□□□□□ -1.21
SS18-204ENST00000539244 S100A12P80511 92 aa7.52□□□□□ -1.21
SS18-204ENST00000539244 LCE2CQ5TA81 110 aa7.52□□□□□ -1.21
SS18-204ENST00000539244 RPS10P5Q9NQ39 176 aa7.52□□□□□ -1.21
SS18-204ENST00000539244 IGLV9-49A0A0B4J1Y8 123 aa7.51□□□□□ -1.21
SS18-204ENST00000539244 LOC107984156A0A0G2JMH3 177 aa7.51□□□□□ -1.21
SS18-204ENST00000539244 ARL17AQ8IVW1 177 aa7.51□□□□□ -1.21
SS18-204ENST00000539244 Q9BRP9 147 aa7.51□□□□□ -1.21
SS18-204ENST00000539244 IFI27L1Q96BM0 104 aa7.5□□□□□ -1.21
SS18-204ENST00000539244 TRBV10-2A0A0K0K1G8 114 aa7.49□□□□□ -1.21
SS18-204ENST00000539244 IFITM2Q01629 132 aa7.49□□□□□ -1.21
SS18-204ENST00000539244 Q6ZRX8 168 aa7.49□□□□□ -1.21
SS18-204ENST00000539244 MAP1LC3CQ9BXW4 147 aa7.49□□□□□ -1.21
SS18-204ENST00000539244 MYMXA0A1B0GTQ4 84 aa7.48□□□□□ -1.21
SS18-204ENST00000539244 KRTAP19-2Q3LHN2 52 aa7.48□□□□□ -1.21
SS18-204ENST00000539244 FSIP2Q5CZC0 6907 aa7.47□□□□□ -1.21
SS18-204ENST00000539244 DDTP30046 118 aa7.47□□□□□ -1.21
SS18-204ENST00000539244 CHCHD1Q96BP2 118 aaKnown RBP7.47□□□□□ -1.21
SS18-204ENST00000539244 COMMD7Q86VX2 200 aa7.46□□□□□ -1.22
SS18-204ENST00000539244 SPANXB1Q9NS25 103 aaPredicted RBP7.45□□□□□ -1.22
SS18-204ENST00000539244 IGLV6-57P01721 117 aa7.44□□□□□ -1.22
SS18-204ENST00000539244 TSPEAR-AS2P59090 65 aa7.44□□□□□ -1.22
SS18-204ENST00000539244 NDUFC2O95298 119 aa7.43□□□□□ -1.22
SS18-204ENST00000539244 MT1HP80294 61 aa7.43□□□□□ -1.22
SS18-204ENST00000539244 JOSD1Q15040 202 aaPredicted RBP7.43□□□□□ -1.22
SS18-204ENST00000539244 C5orf52A6NGY3 159 aa7.42□□□□□ -1.22
SS18-204ENST00000539244 LEPROTO15243 131 aa7.42□□□□□ -1.22
SS18-204ENST00000539244 C9orf153Q5TBE3 101 aa7.42□□□□□ -1.22
SS18-204ENST00000539244 TRAV23DV6A0A075B6W5 121 aa7.4□□□□□ -1.22
SS18-204ENST00000539244 CFC1BP0CG36 223 aa7.4□□□□□ -1.22
SS18-204ENST00000539244 S100A7L2Q5SY68 101 aa7.4□□□□□ -1.22
SS18-204ENST00000539244 MIEN1Q9BRT3 115 aa7.4□□□□□ -1.22
SS18-204ENST00000539244 NMUP48645 174 aa7.39□□□□□ -1.23
SS18-204ENST00000539244 PCOTHQ58A44 107 aa7.39□□□□□ -1.23
SS18-204ENST00000539244 J3QQQ9 107 aa7.38□□□□□ -1.23
SS18-204ENST00000539244 ZNF73O43830 326 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms