RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 IGKV2-29A2NJV5 120 aaPredicted RBP5.45□□□□□ -1.54
USP28-205ENST00000537706 FXYD2P54710 66 aa5.45□□□□□ -1.54
USP28-205ENST00000537706 GAGE2BQ13066 116 aa5.45□□□□□ -1.54
USP28-205ENST00000537706 GVQW2A0A096LPI5 108 aaPredicted RBP5.44□□□□□ -1.54
USP28-205ENST00000537706 LEPROTO15243 131 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 PTTG1IPP53801 180 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 TSPEAR-AS2P59090 65 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 SMAGPQ0VAQ4 97 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 UBE2V1Q13404 147 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 Q6ZUT4 128 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 IGLV7-46A0A075B6I9 117 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 LOC107984640A0A0U1RRK4 108 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 TINCRA0A1B0GVN0 87 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 C9orf118A6NHY6 69 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 J3QQQ9 107 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 KRTAP1-4P0C5Y4 121 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 SCGB1D4Q6XE38 83 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 PLEKHB2Q96CS7 222 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 HIST1H4GQ99525 98 aa5.44□□□□□ -1.54
USP28-205ENST00000537706 A0A087WZ39 114 aa5.43□□□□□ -1.54
USP28-205ENST00000537706 LGALS3P17931 250 aaKnown RBP5.43□□□□□ -1.54
USP28-205ENST00000537706 VAMP3Q15836 100 aa5.43□□□□□ -1.54
USP28-205ENST00000537706 OR5A1Q8NGJ0 315 aa5.43□□□□□ -1.54
USP28-205ENST00000537706 CSDC2Q9Y534 153 aaKnown RBP5.43□□□□□ -1.54
USP28-205ENST00000537706 A0A1B0GUV1 79 aa5.42□□□□□ -1.54
USP28-205ENST00000537706 SMIM13P0DJ93 91 aa5.42□□□□□ -1.54
USP28-205ENST00000537706 SPANXB1Q9NS25 103 aaPredicted RBP5.42□□□□□ -1.54
USP28-205ENST00000537706 IGLV5-45A0A087WSX0 123 aa5.42□□□□□ -1.54
USP28-205ENST00000537706 A0A1B0GWB2 263 aa5.42□□□□□ -1.54
USP28-205ENST00000537706 CCL25O15444 150 aa5.42□□□□□ -1.54
USP28-205ENST00000537706 RNASE13Q5GAN3 156 aaKnown RBP5.42□□□□□ -1.54
USP28-205ENST00000537706 NTM-AS1Q6ZSK4 140 aa5.42□□□□□ -1.54
USP28-205ENST00000537706 NHP2Q9NX24 153 aaKnown RBP5.42□□□□□ -1.54
USP28-205ENST00000537706 TMEM238LA0A1B0GVL6 79 aa5.41□□□□□ -1.54
USP28-205ENST00000537706 A6NJY4 79 aa5.41□□□□□ -1.54
USP28-205ENST00000537706 H7C423 109 aa5.41□□□□□ -1.54
USP28-205ENST00000537706 UBE2L6O14933 153 aa5.41□□□□□ -1.54
USP28-205ENST00000537706 FAM19A3Q7Z5A8 133 aa5.41□□□□□ -1.54
USP28-205ENST00000537706 TMEM243Q9BU79 118 aa5.41□□□□□ -1.54
USP28-205ENST00000537706 IGHV1-58A0A0C4DH39 117 aa5.4□□□□□ -1.54
USP28-205ENST00000537706 A0A1W2PNN7 141 aa5.4□□□□□ -1.54
USP28-205ENST00000537706 H3BUT2 72 aa5.4□□□□□ -1.54
USP28-205ENST00000537706 K7ERJ3 54 aa5.4□□□□□ -1.54
USP28-205ENST00000537706 SYCNQ0VAF6 134 aa5.4□□□□□ -1.54
USP28-205ENST00000537706 C9orf116Q5BN46 136 aaPredicted RBP5.4□□□□□ -1.54
USP28-205ENST00000537706 AMMECR1LQ6DCA0 310 aa5.4□□□□□ -1.54
USP28-205ENST00000537706 PHF5AQ7RTV0 110 aaKnown RBP5.4□□□□□ -1.54
USP28-205ENST00000537706 LINC00337Q8N6G1 96 aa5.4□□□□□ -1.54
USP28-205ENST00000537706 GEMIN7Q9H840 131 aaKnown RBP5.4□□□□□ -1.54
USP28-205ENST00000537706 IGKV3OR2-268A0A0C4DH90 116 aa5.4□□□□□ -1.55
USP28-205ENST00000537706 A0A1W2PPM0 123 aa5.4□□□□□ -1.55
USP28-205ENST00000537706 ZNF561-AS1K7EIQ3 104 aa5.4□□□□□ -1.55
USP28-205ENST00000537706 HERVK_113P63121 156 aa5.4□□□□□ -1.55
USP28-205ENST00000537706 TYMSOSQ8TAI1 123 aa5.4□□□□□ -1.55
USP28-205ENST00000537706 RAB37Q96AX2 223 aa5.4□□□□□ -1.55
USP28-205ENST00000537706 RETNLBQ9BQ08 111 aa5.4□□□□□ -1.55
USP28-205ENST00000537706 K7EP34 96 aa5.39□□□□□ -1.55
USP28-205ENST00000537706 SEC61BP60468 96 aaKnown RBP5.39□□□□□ -1.55
USP28-205ENST00000537706 ASB16-AS1Q495Z4 193 aa5.39□□□□□ -1.55
USP28-205ENST00000537706 GTF2H5Q6ZYL4 71 aa5.39□□□□□ -1.55
USP28-205ENST00000537706 IGLV4-60A0A075B6I1 120 aa5.38□□□□□ -1.55
USP28-205ENST00000537706 TMEM238C9JI98 176 aa5.38□□□□□ -1.55
USP28-205ENST00000537706 FABP2P12104 132 aa5.38□□□□□ -1.55
USP28-205ENST00000537706 CHCHD10Q8WYQ3 142 aaPredicted RBP5.38□□□□□ -1.55
USP28-205ENST00000537706 TMEM101Q96IK0 257 aa5.38□□□□□ -1.55
USP28-205ENST00000537706 CDC42SE2Q9NRR3 84 aa5.38□□□□□ -1.55
USP28-205ENST00000537706 GAGE10A6NGK3 116 aa5.38□□□□□ -1.55
USP28-205ENST00000537706 SPINK8P0C7L1 97 aa5.38□□□□□ -1.55
USP28-205ENST00000537706 LINC00242Q5T6M2 205 aa5.38□□□□□ -1.55
USP28-205ENST00000537706 CDKN2A-AS1Q9UH64 79 aa5.38□□□□□ -1.55
USP28-205ENST00000537706 IGLV5-39A0A0G2JS06 123 aa5.37□□□□□ -1.55
USP28-205ENST00000537706 A0A0J9YXY3 114 aa5.37□□□□□ -1.55
USP28-205ENST00000537706 NAA38Q9BRA0 125 aaKnown RBP5.37□□□□□ -1.55
USP28-205ENST00000537706 NDUFA12Q9UI09 145 aa5.37□□□□□ -1.55
USP28-205ENST00000537706 SPCS1Q9Y6A9 102 aa5.37□□□□□ -1.55
USP28-205ENST00000537706 RPL18AQ02543 176 aaKnown RBP5.36□□□□□ -1.55
USP28-205ENST00000537706 PPDPFQ9H3Y8 114 aa5.36□□□□□ -1.55
USP28-205ENST00000537706 NDUFA1O15239 70 aa5.36□□□□□ -1.55
USP28-205ENST00000537706 TRAV13-1A0A0B4J241 112 aa5.35□□□□□ -1.55
USP28-205ENST00000537706 SMIM1B2RUZ4 78 aa5.35□□□□□ -1.55
USP28-205ENST00000537706 TIMM17BO60830 172 aa5.35□□□□□ -1.55
USP28-205ENST00000537706 UBE2BP63146 152 aa5.35□□□□□ -1.55
USP28-205ENST00000537706 RPL24P83731 157 aaKnown RBP5.35□□□□□ -1.55
USP28-205ENST00000537706 LITAFQ99732 161 aa5.35□□□□□ -1.55
USP28-205ENST00000537706 SPANXDQ9BXN6 97 aa5.35□□□□□ -1.55
USP28-205ENST00000537706 SPANXCQ9NY87 97 aa5.35□□□□□ -1.55
USP28-205ENST00000537706 APOMO95445 188 aa5.35□□□□□ -1.55
USP28-205ENST00000537706 LINC00526Q96FQ7 95 aa5.34□□□□□ -1.55
USP28-205ENST00000537706 A0A0B4J2C4 111 aa5.33□□□□□ -1.56
USP28-205ENST00000537706 A4D1N5 150 aa5.33□□□□□ -1.56
USP28-205ENST00000537706 CFC1P0CG37 223 aa5.33□□□□□ -1.56
USP28-205ENST00000537706 FOXI1Q12951 378 aa5.33□□□□□ -1.56
USP28-205ENST00000537706 LYRM7Q5U5X0 104 aa5.33□□□□□ -1.56
USP28-205ENST00000537706 LINC00304Q8N9R0 145 aa5.33□□□□□ -1.56
USP28-205ENST00000537706 IFITM1P13164 125 aa5.32□□□□□ -1.56
USP28-205ENST00000537706 MUSTN1Q8IVN3 82 aa5.32□□□□□ -1.56
USP28-205ENST00000537706 ZNF625Q96I27 306 aaPredicted RBP5.32□□□□□ -1.56
USP28-205ENST00000537706 CAMK2N2Q96S95 79 aa5.32□□□□□ -1.56
USP28-205ENST00000537706 ZNF861PO60384 105 aa5.31□□□□□ -1.56
USP28-205ENST00000537706 LORP23490 312 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms