RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 WNK3Q9BYP7 1800 aa0.15□□□□□ -2.39
CD44-238ENST00000534296 ZNF236Q9UL36 1845 aa0.15□□□□□ -2.39
CD44-238ENST00000534296 ABCA8O94911 1581 aa0.15□□□□□ -2.39
CD44-238ENST00000534296 GLI2P10070 1586 aa0.15□□□□□ -2.39
CD44-238ENST00000534296 SIX6O95475 246 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 RBM3P98179 157 aaKnown RBP0.14□□□□□ -2.39
CD44-238ENST00000534296 TTC9CQ8N5M4 171 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 LSM10Q969L4 123 aaKnown RBP0.14□□□□□ -2.39
CD44-238ENST00000534296 LINC00470Q9BZP3 86 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 CYP4F30PQ9H0H9 118 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 NAA60Q9H7X0 242 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 PSME4Q14997 1843 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 DNAH8Q96JB1 4490 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 TCHHQ07283 1943 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 NKTRP30414 1462 aaKnown RBP0.14□□□□□ -2.39
CD44-238ENST00000534296 PLEKHH2Q8IVE3 1493 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 KDM3BQ7LBC6 1761 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 SCN11AQ9UI33 1791 aa0.14□□□□□ -2.39
CD44-238ENST00000534296 NAIPQ13075 1403 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 CASKIN1Q8WXD9 1431 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 POLR1AO95602 1720 aaPredicted RBP0.13□□□□□ -2.39
CD44-238ENST00000534296 HCG22E2RYF7 251 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 HAMPP81172 84 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 SPAG11BQ08648 103 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 SPAG11AQ6PDA7 123 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 SPRR2FQ96RM1 72 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 V9GYH0 126 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 RAPGEF2Q9Y4G8 1499 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 SAMD9Q5K651 1589 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 TOPAZ1Q8N9V7 1692 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 UGGT2Q9NYU1 1516 aa0.13□□□□□ -2.39
CD44-238ENST00000534296 LTN1O94822 1766 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 SPAARA0A1B0GVQ0 90 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 G3V318 75 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 M0R135 149 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 BTG2P78543 158 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 COX17Q14061 63 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 PPP3R2Q96LZ3 170 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 SNRNP25Q9BV90 132 aaKnown RBP0.12□□□□□ -2.39
CD44-238ENST00000534296 FAM107BQ9H098 131 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 AGPAT4-IT1Q9H0P7 198 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 RERGLQ9H628 205 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 SERP1Q9Y6X1 66 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 ITSN1Q15811 1721 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 SUPT6HQ7KZ85 1726 aaKnown RBP0.12□□□□□ -2.39
CD44-238ENST00000534296 FMN2Q9NZ56 1722 aa0.12□□□□□ -2.39
CD44-238ENST00000534296 ITSN2Q9NZM3 1697 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 MAGI1Q96QZ7 1491 aaPredicted RBP0.11□□□□□ -2.39
CD44-238ENST00000534296 LOC100130705A0A1B0GUX0 176 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 IFNGP01579 166 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 APOC3P02656 99 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 SMR3BP02814 79 aaPredicted RBP0.11□□□□□ -2.39
CD44-238ENST00000534296 CCL18P55774 89 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 KRTAP20-2Q3LI61 65 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 TMEM170BQ5T4T1 132 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 Q8N8P6 123 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 LENEPQ9Y5L5 61 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 KIF14Q15058 1648 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 NEXMIFQ5QGS0 1516 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 NHSQ6T4R5 1651 aa0.11□□□□□ -2.39
CD44-238ENST00000534296 FANCAO15360 1455 aa0.1□□□□□ -2.39
CD44-238ENST00000534296 MYOM2P54296 1465 aa0.1□□□□□ -2.39
CD44-238ENST00000534296 DCDP81605 110 aaKnown RBP0.1□□□□□ -2.39
CD44-238ENST00000534296 MEIG1Q5JSS6 88 aa0.1□□□□□ -2.39
CD44-238ENST00000534296 Q6AWC8 147 aa0.1□□□□□ -2.39
CD44-238ENST00000534296 Q8IZM0 81 aa0.1□□□□□ -2.39
CD44-238ENST00000534296 ARHGEF5Q12774 1597 aa0.1□□□□□ -2.39
CD44-238ENST00000534296 A2ML1A8K2U0 1454 aa0.1□□□□□ -2.39
CD44-238ENST00000534296 PRDM15P57071 1507 aaPredicted RBP0.09□□□□□ -2.39
CD44-238ENST00000534296 SBF2Q86WG5 1849 aa0.09□□□□□ -2.39
CD44-238ENST00000534296 FXYD6-FXYD2A0A087WZ82 144 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 MIF4GDA9UHW6 222 aaKnown RBP0.09□□□□□ -2.4
CD44-238ENST00000534296 GNG7O60262 68 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 APOC2P02655 101 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 TPPP2P59282 170 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 WFDC2Q14508 124 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 DEFB109BQ30KR1 87 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 Q56UQ5 140 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 MYO7BQ6PIF6 2116 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 TIAM1Q13009 1591 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 LRRC37AA6NMS7 1700 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 UBR1Q8IWV7 1749 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 RGPD3A6NKT7 1758 aaPredicted RBP0.09□□□□□ -2.4
CD44-238ENST00000534296 RGPD4Q7Z3J3 1758 aa0.09□□□□□ -2.4
CD44-238ENST00000534296 C5P01031 1676 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 IQGAP1P46940 1657 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 MAGI3Q5TCQ9 1506 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 DUOX2Q9NRD8 1548 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 ARHGEF12Q9NZN5 1544 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 BAGE2Q86Y30 109 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 C8orf59Q8N0T1 100 aaPredicted RBP0.08□□□□□ -2.4
CD44-238ENST00000534296 MYOZ3Q8TDC0 251 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 C1orf54Q8WWF1 131 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 DYNLRB1Q9NP97 96 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 MRC1P22897 1456 aa0.08□□□□□ -2.4
CD44-238ENST00000534296 UBR3Q6ZT12 1888 aa0.07□□□□□ -2.4
CD44-238ENST00000534296 KNDC1Q76NI1 1749 aa0.07□□□□□ -2.4
CD44-238ENST00000534296 DOT1LQ8TEK3 1739 aa0.07□□□□□ -2.4
CD44-238ENST00000534296 LOC285095A0A1B0GVY8 99 aa0.07□□□□□ -2.4
CD44-238ENST00000534296 UQCR11O14957 56 aa0.07□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms