RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, human

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-215	ENST00000533440	SRP19	P09132	144 aa	Known RBP	4.26	□□□□□ -1.73
NXF1-215	ENST00000533440	ZNF706	Q9Y5V0	76 aa	Predicted RBP	4.26	□□□□□ -1.73
NXF1-215	ENST00000533440	IGLV5-45	A0A087WSX0	123 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440	LOC389332	A0A1B0GUA5	103 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440		M0R2T5	61 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440	SLC25A20	O43772	301 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440	ORMDL2	Q53FV1	153 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440	PCOTH	Q58A44	107 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440	PAPPA-AS1	Q5QFB9	102 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440		Q8N8P6	123 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440		Q8NDZ9	215 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440	MAP1LC3A	Q9H492	121 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440	LAMTOR2	Q9Y2Q5	125 aa		4.25	□□□□□ -1.73
NXF1-215	ENST00000533440	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.25	□□□□□ -1.73
NXF1-215	ENST00000533440	TINCR	A0A1B0GVN0	87 aa		4.24	□□□□□ -1.73
NXF1-215	ENST00000533440		K7EMI3	77 aa		4.24	□□□□□ -1.73
NXF1-215	ENST00000533440	RPL24	P83731	157 aa	Known RBP	4.24	□□□□□ -1.73
NXF1-215	ENST00000533440	LINC00483	Q53H64	154 aa		4.24	□□□□□ -1.73
NXF1-215	ENST00000533440	TIMM17A	Q99595	171 aa		4.24	□□□□□ -1.73
NXF1-215	ENST00000533440	SND1-IT1	Q9HBX3	110 aa		4.24	□□□□□ -1.73
NXF1-215	ENST00000533440	PFN2	P35080	140 aa		4.23	□□□□□ -1.73
NXF1-215	ENST00000533440	ADIRF	Q15847	76 aa		4.23	□□□□□ -1.73
NXF1-215	ENST00000533440	SSBP3-AS1	Q7Z2R9	100 aa		4.23	□□□□□ -1.73
NXF1-215	ENST00000533440	ATP5L	O75964	103 aa		4.22	□□□□□ -1.73
NXF1-215	ENST00000533440	SPINK8	P0C7L1	97 aa		4.22	□□□□□ -1.73
NXF1-215	ENST00000533440	ALKAL2	Q6UX46	152 aa		4.22	□□□□□ -1.73
NXF1-215	ENST00000533440	ATP5L2	Q7Z4Y8	100 aa		4.22	□□□□□ -1.73
NXF1-215	ENST00000533440	NAT8	Q9UHE5	227 aa		4.22	□□□□□ -1.73
NXF1-215	ENST00000533440	RAB14	P61106	215 aa		4.21	□□□□□ -1.74
NXF1-215	ENST00000533440	MOBP	Q13875	183 aa		4.21	□□□□□ -1.74
NXF1-215	ENST00000533440	COX17	Q14061	63 aa		4.21	□□□□□ -1.74
NXF1-215	ENST00000533440	SMCR5	Q8TEV8	140 aa		4.21	□□□□□ -1.74
NXF1-215	ENST00000533440	TOMM6	Q96B49	74 aa		4.21	□□□□□ -1.74
NXF1-215	ENST00000533440	G0S2	P27469	103 aa		4.2	□□□□□ -1.74
NXF1-215	ENST00000533440	SPRR1A	P35321	89 aa		4.2	□□□□□ -1.74
NXF1-215	ENST00000533440	ERAS	Q7Z444	233 aa		4.2	□□□□□ -1.74
NXF1-215	ENST00000533440	AKAP14	Q86UN6	197 aa		4.2	□□□□□ -1.74
NXF1-215	ENST00000533440	NXT2	Q9NPJ8	142 aa	Known RBP	4.2	□□□□□ -1.74
NXF1-215	ENST00000533440	ERG28	Q9UKR5	140 aa		4.2	□□□□□ -1.74
NXF1-215	ENST00000533440	IGLV9-49	A0A0B4J1Y8	123 aa		4.19	□□□□□ -1.74
NXF1-215	ENST00000533440	IGLV5-39	A0A0G2JS06	123 aa		4.19	□□□□□ -1.74
NXF1-215	ENST00000533440		C9JQL5	133 aa		4.19	□□□□□ -1.74
NXF1-215	ENST00000533440	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	4.19	□□□□□ -1.74
NXF1-215	ENST00000533440	PRY	O14603	147 aa		4.19	□□□□□ -1.74
NXF1-215	ENST00000533440	SYNE2	Q8WXH0	6885 aa	Known RBP	4.19	□□□□□ -1.74
NXF1-215	ENST00000533440	ADCYAP1	P18509	176 aa		4.18	□□□□□ -1.74
NXF1-215	ENST00000533440	GAGE2A	Q6NT46	116 aa		4.18	□□□□□ -1.74
NXF1-215	ENST00000533440	SCGB3A1	Q96QR1	104 aa		4.18	□□□□□ -1.74
NXF1-215	ENST00000533440	CST9L	Q9H4G1	147 aa		4.18	□□□□□ -1.74
NXF1-215	ENST00000533440	MACF1	Q9UPN3	7388 aa	Known RBP	4.17	□□□□□ -1.74
NXF1-215	ENST00000533440		H3BRM9	83 aa		4.17	□□□□□ -1.74
NXF1-215	ENST00000533440	COX6B2	Q6YFQ2	88 aa		4.17	□□□□□ -1.74
NXF1-215	ENST00000533440	KCNQ1DN	Q9H478	68 aa		4.17	□□□□□ -1.74
NXF1-215	ENST00000533440	C9orf92	A6NGG3	77 aa		4.16	□□□□□ -1.74
NXF1-215	ENST00000533440	ZNF625	Q96I27	306 aa	Predicted RBP	4.16	□□□□□ -1.74
NXF1-215	ENST00000533440	ETDC	A0A1B0GVM5	59 aa		4.15	□□□□□ -1.75
NXF1-215	ENST00000533440	LINC01549	A6NIU2	74 aa		4.15	□□□□□ -1.75
NXF1-215	ENST00000533440	ERC2-IT1	O76042	136 aa		4.15	□□□□□ -1.75
NXF1-215	ENST00000533440	PMVK	Q15126	192 aa		4.15	□□□□□ -1.75
NXF1-215	ENST00000533440		B5MCH6	92 aa		4.14	□□□□□ -1.75
NXF1-215	ENST00000533440	CFC1	P0CG37	223 aa		4.14	□□□□□ -1.75
NXF1-215	ENST00000533440	IGLC3	P0DOY3	106 aa		4.14	□□□□□ -1.75
NXF1-215	ENST00000533440	PEA15	Q15121	130 aa		4.14	□□□□□ -1.75
NXF1-215	ENST00000533440	SFTA2	Q6UW10	78 aa		4.14	□□□□□ -1.75
NXF1-215	ENST00000533440	LINC01546	A6NGU7	62 aa		4.13	□□□□□ -1.75
NXF1-215	ENST00000533440	IGLV6-57	P01721	117 aa		4.13	□□□□□ -1.75
NXF1-215	ENST00000533440	ZNF22	P17026	224 aa	Predicted RBP	4.13	□□□□□ -1.75
NXF1-215	ENST00000533440		Q9BRP9	147 aa		4.13	□□□□□ -1.75
NXF1-215	ENST00000533440	TRAV9-1	A0A075B6T8	112 aa		4.12	□□□□□ -1.75
NXF1-215	ENST00000533440	LINC00158	P58513	81 aa		4.12	□□□□□ -1.75
NXF1-215	ENST00000533440	C9orf153	Q5TBE3	101 aa		4.12	□□□□□ -1.75
NXF1-215	ENST00000533440	KRTAP9-8	Q9BYQ0	159 aa		4.12	□□□□□ -1.75
NXF1-215	ENST00000533440	TRBV10-3	A0A0K0K1G6	114 aa		4.11	□□□□□ -1.75
NXF1-215	ENST00000533440	NCR3	O14931	201 aa		4.11	□□□□□ -1.75
NXF1-215	ENST00000533440	RPL37	P61927	97 aa	Known RBP	4.11	□□□□□ -1.75
NXF1-215	ENST00000533440	BOD1L2	Q8IYS8	172 aa		4.11	□□□□□ -1.75
NXF1-215	ENST00000533440	LIMD2	Q9BT23	127 aa		4.11	□□□□□ -1.75
NXF1-215	ENST00000533440	KRTAP9-9	Q9BYP9	154 aa		4.11	□□□□□ -1.75
NXF1-215	ENST00000533440	KRTAP9-4	Q9BYQ2	154 aa		4.11	□□□□□ -1.75
NXF1-215	ENST00000533440		A0A0U1RRA0	63 aa		4.1	□□□□□ -1.75
NXF1-215	ENST00000533440	KRTAP23-1	A1A580	65 aa		4.1	□□□□□ -1.75
NXF1-215	ENST00000533440	KIAA1644	Q3SXP7	199 aa		4.1	□□□□□ -1.75
NXF1-215	ENST00000533440		Q6ZRX8	168 aa		4.09	□□□□□ -1.75
NXF1-215	ENST00000533440	C11orf86	A6NJI1	115 aa		4.08	□□□□□ -1.76
NXF1-215	ENST00000533440	SMIM13	P0DJ93	91 aa		4.08	□□□□□ -1.76
NXF1-215	ENST00000533440	S100A12	P80511	92 aa		4.08	□□□□□ -1.76
NXF1-215	ENST00000533440	MT-ND4L	P03901	98 aa		4.07	□□□□□ -1.76
NXF1-215	ENST00000533440	HRCT1	Q6UXD1	115 aa		4.07	□□□□□ -1.76
NXF1-215	ENST00000533440	FA2H	Q7L5A8	372 aa		4.07	□□□□□ -1.76
NXF1-215	ENST00000533440	MIR7-3HG	Q8N6C7	128 aa		4.07	□□□□□ -1.76
NXF1-215	ENST00000533440		A0A096LNJ9	63 aa		4.06	□□□□□ -1.76
NXF1-215	ENST00000533440	C5orf52	A6NGY3	159 aa		4.06	□□□□□ -1.76
NXF1-215	ENST00000533440	ATP6V1G1	O75348	118 aa		4.06	□□□□□ -1.76
NXF1-215	ENST00000533440	DDT	P30046	118 aa		4.06	□□□□□ -1.76
NXF1-215	ENST00000533440	NDUFA6	P56556	154 aa		4.06	□□□□□ -1.76
NXF1-215	ENST00000533440	TMEM170B	Q5T4T1	132 aa		4.06	□□□□□ -1.76
NXF1-215	ENST00000533440	ST20-AS1	Q8NBB2	130 aa		4.06	□□□□□ -1.76
NXF1-215	ENST00000533440	KRTAP3-1	Q9BYR8	98 aa		4.06	□□□□□ -1.76
NXF1-215	ENST00000533440	TRBV10-2	A0A0K0K1G8	114 aa		4.05	□□□□□ -1.76
NXF1-215	ENST00000533440	SPRR1B	P22528	89 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms