RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 HIST1H2BJP06899 126 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST1H2BOP23527 126 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST1H2BBP33778 126 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST1H2BDP58876 126 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST1H2BCP62807 126 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST2H2BEQ16778 126 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST1H2BHQ93079 126 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 ZNF625Q96I27 306 aaPredicted RBP6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST1H2BNQ99877 126 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 HIST1H2BMQ99879 126 aa6.66□□□□□ -1.34
VPS28-214ENST00000531032 TRAV12-1A0A0B4J245 112 aa6.65□□□□□ -1.34
VPS28-214ENST00000531032 SERF1AO75920 110 aa6.65□□□□□ -1.34
VPS28-214ENST00000531032 A0A0U1RQV1 116 aa6.64□□□□□ -1.35
VPS28-214ENST00000531032 COX17Q14061 63 aa6.64□□□□□ -1.35
VPS28-214ENST00000531032 KRTAP13-2Q52LG2 175 aa6.64□□□□□ -1.35
VPS28-214ENST00000531032 FAM19A2Q8N3H0 131 aa6.64□□□□□ -1.35
VPS28-214ENST00000531032 ANAPC11Q9NYG5 84 aa6.64□□□□□ -1.35
VPS28-214ENST00000531032 UBE2AP49459 152 aa6.63□□□□□ -1.35
VPS28-214ENST00000531032 LINC00158P58513 81 aa6.63□□□□□ -1.35
VPS28-214ENST00000531032 RPL24P83731 157 aaKnown RBP6.63□□□□□ -1.35
VPS28-214ENST00000531032 FAM229BQ4G0N7 80 aa6.63□□□□□ -1.35
VPS28-214ENST00000531032 SND1-IT1Q9HBX3 110 aa6.63□□□□□ -1.35
VPS28-214ENST00000531032 IGKV2-28A0A075B6P5 120 aa6.62□□□□□ -1.35
VPS28-214ENST00000531032 TMEM223A0PJW6 202 aa6.62□□□□□ -1.35
VPS28-214ENST00000531032 LEPROTL1O95214 131 aa6.62□□□□□ -1.35
VPS28-214ENST00000531032 IGKV2D-28P01615 120 aa6.62□□□□□ -1.35
VPS28-214ENST00000531032 MEIG1Q5JSS6 88 aa6.62□□□□□ -1.35
VPS28-214ENST00000531032 A0A0U1RRA0 63 aa6.61□□□□□ -1.35
VPS28-214ENST00000531032 HSPB8Q9UJY1 196 aa6.61□□□□□ -1.35
VPS28-214ENST00000531032 VPREB1P12018 145 aa6.6□□□□□ -1.35
VPS28-214ENST00000531032 LINC00304Q8N9R0 145 aa6.6□□□□□ -1.35
VPS28-214ENST00000531032 FABP4P15090 132 aa6.59□□□□□ -1.35
VPS28-214ENST00000531032 PLNP26678 52 aa6.59□□□□□ -1.35
VPS28-214ENST00000531032 HERVK_113P61574 105 aa6.59□□□□□ -1.35
VPS28-214ENST00000531032 HERV-K104P63124 156 aa6.59□□□□□ -1.35
VPS28-214ENST00000531032 MYMXA0A1B0GTQ4 84 aa6.58□□□□□ -1.36
VPS28-214ENST00000531032 LINC00587B1AMM8 73 aa6.58□□□□□ -1.36
VPS28-214ENST00000531032 CTAG1AP78358 180 aa6.58□□□□□ -1.36
VPS28-214ENST00000531032 PRLHP81277 87 aa6.58□□□□□ -1.36
VPS28-214ENST00000531032 COA6Q5JTJ3 125 aaKnown RBP6.58□□□□□ -1.36
VPS28-214ENST00000531032 FAM19A1Q7Z5A9 133 aa6.58□□□□□ -1.36
VPS28-214ENST00000531032 RETNLBQ9BQ08 111 aa6.58□□□□□ -1.36
VPS28-214ENST00000531032 NDUFA12Q9UI09 145 aa6.58□□□□□ -1.36
VPS28-214ENST00000531032 IGKV2D-26A0A0A0MRZ7 120 aa6.57□□□□□ -1.36
VPS28-214ENST00000531032 SMIM13P0DJ93 91 aa6.57□□□□□ -1.36
VPS28-214ENST00000531032 TPRXLQ17RH7 258 aa6.57□□□□□ -1.36
VPS28-214ENST00000531032 LCE2AQ5TA79 106 aaPredicted RBP6.57□□□□□ -1.36
VPS28-214ENST00000531032 MAP1LC3CQ9BXW4 147 aa6.57□□□□□ -1.36
VPS28-214ENST00000531032 TMEM126AQ9H061 195 aa6.57□□□□□ -1.36
VPS28-214ENST00000531032 TMEM238C9JI98 176 aa6.56□□□□□ -1.36
VPS28-214ENST00000531032 M0R378 163 aa6.56□□□□□ -1.36
VPS28-214ENST00000531032 DPM2O94777 84 aa6.56□□□□□ -1.36
VPS28-214ENST00000531032 PLEKHB2Q96CS7 222 aa6.56□□□□□ -1.36
VPS28-214ENST00000531032 LGALS3P17931 250 aaKnown RBP6.55□□□□□ -1.36
VPS28-214ENST00000531032 BOD1L2Q8IYS8 172 aa6.55□□□□□ -1.36
VPS28-214ENST00000531032 MIR7-3HGQ8N6C7 128 aa6.55□□□□□ -1.36
VPS28-214ENST00000531032 Q8NDZ9 215 aa6.55□□□□□ -1.36
VPS28-214ENST00000531032 PMCHL2Q9BQD1 86 aa6.55□□□□□ -1.36
VPS28-214ENST00000531032 KRTAP9-2Q9BYQ4 174 aa6.55□□□□□ -1.36
VPS28-214ENST00000531032 NCR3O14931 201 aa6.54□□□□□ -1.36
VPS28-214ENST00000531032 LEPROTO15243 131 aa6.54□□□□□ -1.36
VPS28-214ENST00000531032 IGKCP01834 107 aa6.54□□□□□ -1.36
VPS28-214ENST00000531032 IGLV7-46A0A075B6I9 117 aa6.53□□□□□ -1.36
VPS28-214ENST00000531032 J3QQQ9 107 aa6.53□□□□□ -1.36
VPS28-214ENST00000531032 S100A12P80511 92 aa6.53□□□□□ -1.36
VPS28-214ENST00000531032 MIEN1Q9BRT3 115 aa6.53□□□□□ -1.36
VPS28-214ENST00000531032 CDIP1Q9H305 208 aa6.53□□□□□ -1.36
VPS28-214ENST00000531032 FAT4Q6V0I7 4981 aa6.53□□□□□ -1.36
VPS28-214ENST00000531032 NMUP48645 174 aa6.52□□□□□ -1.37
VPS28-214ENST00000531032 TSPEAR-AS2P59090 65 aa6.52□□□□□ -1.37
VPS28-214ENST00000531032 C3orf22Q8N5N4 141 aa6.52□□□□□ -1.37
VPS28-214ENST00000531032 HIGD2AQ9BW72 106 aa6.52□□□□□ -1.37
VPS28-214ENST00000531032 PRYO14603 147 aa6.51□□□□□ -1.37
VPS28-214ENST00000531032 HIST3H2BBQ8N257 126 aa6.51□□□□□ -1.37
VPS28-214ENST00000531032 ETDCA0A1B0GVM5 59 aa6.5□□□□□ -1.37
VPS28-214ENST00000531032 DAND5Q8N907 189 aa6.5□□□□□ -1.37
VPS28-214ENST00000531032 SPRR4Q96PI1 79 aa6.5□□□□□ -1.37
VPS28-214ENST00000531032 C3orf79P0CE67 100 aa6.49□□□□□ -1.37
VPS28-214ENST00000531032 SNRPEP62304 92 aaKnown RBP6.49□□□□□ -1.37
VPS28-214ENST00000531032 SPAG11AQ6PDA7 123 aa6.49□□□□□ -1.37
VPS28-214ENST00000531032 PPDPFQ9H3Y8 114 aa6.49□□□□□ -1.37
VPS28-214ENST00000531032 MUC17Q685J3 4493 aa6.49□□□□□ -1.37
VPS28-214ENST00000531032 C5orf52A6NGY3 159 aa6.48□□□□□ -1.37
VPS28-214ENST00000531032 SYS1-DBNDD2H3BUS1 97 aa6.48□□□□□ -1.37
VPS28-214ENST00000531032 ZNF706Q9Y5V0 76 aaPredicted RBP6.48□□□□□ -1.37
VPS28-214ENST00000531032 TRBV10-3A0A0K0K1G6 114 aa6.47□□□□□ -1.37
VPS28-214ENST00000531032 E9PLD3 99 aa6.47□□□□□ -1.37
VPS28-214ENST00000531032 FP248Q71RG6 208 aaPredicted RBP6.47□□□□□ -1.37
VPS28-214ENST00000531032 HIST1H2BLQ99880 126 aa6.47□□□□□ -1.37
VPS28-214ENST00000531032 DDTP30046 118 aa6.46□□□□□ -1.38
VPS28-214ENST00000531032 S100A7L2Q5SY68 101 aa6.46□□□□□ -1.38
VPS28-214ENST00000531032 LINC01545Q5VT33 79 aa6.46□□□□□ -1.38
VPS28-214ENST00000531032 KCNQ1DNQ9H478 68 aa6.46□□□□□ -1.38
VPS28-214ENST00000531032 SPANXB1Q9NS25 103 aaPredicted RBP6.46□□□□□ -1.38
VPS28-214ENST00000531032 TRBV10-2A0A0K0K1G8 114 aa6.45□□□□□ -1.38
VPS28-214ENST00000531032 S100A6P06703 90 aa6.45□□□□□ -1.38
VPS28-214ENST00000531032 SPRR1AP35321 89 aa6.45□□□□□ -1.38
VPS28-214ENST00000531032 KRTDAPP60985 99 aa6.45□□□□□ -1.38
VPS28-214ENST00000531032 NPC2P61916 151 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms