RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 SPAG11BQ08648 103 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 GAGE2EQ4V326 116 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 C6orf226Q5I0X4 101 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 GAGE2DQ9UEU5 116 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 LINC00587B1AMM8 73 aa3.98□□□□□ -1.77
CD44-221ENST00000526000 IGLV7-43P04211 117 aa3.98□□□□□ -1.77
CD44-221ENST00000526000 NMUP48645 174 aa3.98□□□□□ -1.77
CD44-221ENST00000526000 KIAA0087Q14695 138 aa3.98□□□□□ -1.77
CD44-221ENST00000526000 FAM19A5Q7Z5A7 132 aaPredicted RBP3.98□□□□□ -1.77
CD44-221ENST00000526000 COX7B2Q8TF08 81 aa3.98□□□□□ -1.77
CD44-221ENST00000526000 PLEKHB2Q96CS7 222 aa3.98□□□□□ -1.77
CD44-221ENST00000526000 LEPROTO15243 131 aa3.97□□□□□ -1.77
CD44-221ENST00000526000 SPINK8P0C7L1 97 aa3.97□□□□□ -1.77
CD44-221ENST00000526000 CKS1BP61024 79 aa3.97□□□□□ -1.77
CD44-221ENST00000526000 HERV-K104P63124 156 aa3.97□□□□□ -1.77
CD44-221ENST00000526000 C10orf25Q5T742 122 aa3.97□□□□□ -1.77
CD44-221ENST00000526000 UNQ6190/PRO20217Q6UXQ8 127 aa3.97□□□□□ -1.77
CD44-221ENST00000526000 DIRC1Q969H9 104 aa3.97□□□□□ -1.77
CD44-221ENST00000526000 KRTAP9-2Q9BYQ4 174 aa3.97□□□□□ -1.77
CD44-221ENST00000526000 TOMM7Q9P0U1 55 aa3.97□□□□□ -1.77
CD44-221ENST00000526000 HSBP1L1C9JCN9 74 aa3.96□□□□□ -1.78
CD44-221ENST00000526000 E9PLD3 99 aa3.96□□□□□ -1.78
CD44-221ENST00000526000 TLX1NBP0CAT3 122 aa3.96□□□□□ -1.78
CD44-221ENST00000526000 MYMXA0A1B0GTQ4 84 aa3.95□□□□□ -1.78
CD44-221ENST00000526000 H0Y9J4 135 aa3.95□□□□□ -1.78
CD44-221ENST00000526000 J3QQQ9 107 aa3.95□□□□□ -1.78
CD44-221ENST00000526000 SCGB1D1O95968 90 aa3.95□□□□□ -1.78
CD44-221ENST00000526000 UBE2BP63146 152 aa3.95□□□□□ -1.78
CD44-221ENST00000526000 COX17Q14061 63 aa3.95□□□□□ -1.78
CD44-221ENST00000526000 JOSD1Q15040 202 aaPredicted RBP3.95□□□□□ -1.78
CD44-221ENST00000526000 SVIPQ8NHG7 77 aa3.95□□□□□ -1.78
CD44-221ENST00000526000 PMCHL2Q9BQD1 86 aa3.95□□□□□ -1.78
CD44-221ENST00000526000 NDUFC2-KCTD14E9PQ53 114 aa3.94□□□□□ -1.78
CD44-221ENST00000526000 KRTAP1-4P0C5Y4 121 aa3.94□□□□□ -1.78
CD44-221ENST00000526000 LGALS3P17931 250 aaKnown RBP3.94□□□□□ -1.78
CD44-221ENST00000526000 KRTAP7-1Q8IUC3 87 aa3.94□□□□□ -1.78
CD44-221ENST00000526000 ZNF625Q96I27 306 aaPredicted RBP3.94□□□□□ -1.78
CD44-221ENST00000526000 C6orf48Q9UBA6 75 aa3.94□□□□□ -1.78
CD44-221ENST00000526000 NDUFA12Q9UI09 145 aa3.94□□□□□ -1.78
CD44-221ENST00000526000 IGLV1-50A0A075B6I6 118 aa3.93□□□□□ -1.78
CD44-221ENST00000526000 C2orf82Q6UX34 121 aa3.93□□□□□ -1.78
CD44-221ENST00000526000 M0QXV9 152 aa3.92□□□□□ -1.78
CD44-221ENST00000526000 TIMM17BO60830 172 aa3.92□□□□□ -1.78
CD44-221ENST00000526000 LORP23490 312 aaPredicted RBP3.92□□□□□ -1.78
CD44-221ENST00000526000 SMCPP49901 116 aaPredicted RBP3.92□□□□□ -1.78
CD44-221ENST00000526000 COPS9Q8WXC6 57 aa3.92□□□□□ -1.78
CD44-221ENST00000526000 ANAPC11Q9NYG5 84 aa3.92□□□□□ -1.78
CD44-221ENST00000526000 ERG28Q9UKR5 140 aa3.92□□□□□ -1.78
CD44-221ENST00000526000 A0A0J9YXY3 114 aa3.91□□□□□ -1.78
CD44-221ENST00000526000 MEIG1Q5JSS6 88 aa3.91□□□□□ -1.78
CD44-221ENST00000526000 C9orf129Q5T035 196 aaKnown RBP3.91□□□□□ -1.78
CD44-221ENST00000526000 Q6ZVH6 145 aa3.91□□□□□ -1.78
CD44-221ENST00000526000 VAMP8Q9BV40 100 aa3.91□□□□□ -1.78
CD44-221ENST00000526000 LOC107984156A0A0G2JMH3 177 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 ZNF815PA8K554 130 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 TMEM238C9JI98 176 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 DLEU1O43261 78 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 SMIM6P0DI80 62 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 TSPEAR-AS2P59090 65 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 S100A12P80511 92 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 ANKRD39Q53RE8 183 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 PYY3Q5JQD4 70 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 ARL17AQ8IVW1 177 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 ATOH7Q8N100 152 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 RETNLBQ9BQ08 111 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 PPDPFQ9H3Y8 114 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 XAGE1AQ9HD64 81 aa3.9□□□□□ -1.79
CD44-221ENST00000526000 IGKV2D-26A0A0A0MRZ7 120 aa3.89□□□□□ -1.79
CD44-221ENST00000526000 A0A0U1RQV1 116 aa3.89□□□□□ -1.79
CD44-221ENST00000526000 ZNF861PO60384 105 aa3.89□□□□□ -1.79
CD44-221ENST00000526000 COX8AP10176 69 aa3.89□□□□□ -1.79
CD44-221ENST00000526000 LINC00158P58513 81 aa3.89□□□□□ -1.79
CD44-221ENST00000526000 SCGB1D4Q6XE38 83 aa3.89□□□□□ -1.79
CD44-221ENST00000526000 BOD1L2Q8IYS8 172 aa3.89□□□□□ -1.79
CD44-221ENST00000526000 C22orf24Q9Y442 160 aa3.89□□□□□ -1.79
CD44-221ENST00000526000 IGLV5-37A0A075B6J1 123 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 A0A087X002 238 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 KRTAP9-6A0A140TA67 174 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 TMEM238LA0A1B0GVL6 79 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 SMIM13P0DJ93 91 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 IFITM1P13164 125 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 PFN2P35080 140 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 RPL13AP40429 203 aaKnown RBP3.88□□□□□ -1.79
CD44-221ENST00000526000 RPL24P83731 157 aaKnown RBP3.88□□□□□ -1.79
CD44-221ENST00000526000 SPATA45Q537H7 98 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 TYMSOSQ8TAI1 123 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 MIEN1Q9BRT3 115 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 TP73-AS1Q9UF72 201 aa3.88□□□□□ -1.79
CD44-221ENST00000526000 GAGE10A6NGK3 116 aa3.87□□□□□ -1.79
CD44-221ENST00000526000 RPL37AP8A6NKH3 93 aa3.87□□□□□ -1.79
CD44-221ENST00000526000 LBHQ53QV2 105 aaPredicted RBP3.87□□□□□ -1.79
CD44-221ENST00000526000 SLC25A34Q6PIV7 304 aa3.87□□□□□ -1.79
CD44-221ENST00000526000 PCP2Q8IVA1 136 aa3.87□□□□□ -1.79
CD44-221ENST00000526000 MIR7-3HGQ8N6C7 128 aa3.87□□□□□ -1.79
CD44-221ENST00000526000 SPANXDQ9BXN6 97 aa3.87□□□□□ -1.79
CD44-221ENST00000526000 SND1-IT1Q9HBX3 110 aa3.87□□□□□ -1.79
CD44-221ENST00000526000 SPANXB1Q9NS25 103 aaPredicted RBP3.87□□□□□ -1.79
CD44-221ENST00000526000 SPANXCQ9NY87 97 aa3.87□□□□□ -1.79
CD44-221ENST00000526000 HIGD1BQ9P298 99 aa3.87□□□□□ -1.79
CD44-221ENST00000526000 PAM16Q9Y3D7 125 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms