RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 TSC22D3Q99576 134 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 LINC00846Q9NV44 126 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 ABCA6Q8N139 1617 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 DOT1LQ8TEK3 1739 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 RGPD8O14715 1765 aaPredicted RBP0.04□□□□□ -2.4
CD44-215ENST00000525241 RGPD5Q99666 1765 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 ZNF609O15014 1411 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 NCOA3Q9Y6Q9 1424 aa0.04□□□□□ -2.4
CD44-215ENST00000525241 MYOM2P54296 1465 aa0.03□□□□□ -2.4
CD44-215ENST00000525241 PRDM15P57071 1507 aaPredicted RBP0.03□□□□□ -2.4
CD44-215ENST00000525241 ABCA8O94911 1581 aa0.03□□□□□ -2.4
CD44-215ENST00000525241 A0A1B0GV90 55 aa0.03□□□□□ -2.4
CD44-215ENST00000525241 A6NIN4 97 aa0.03□□□□□ -2.4
CD44-215ENST00000525241 NAA60Q9H7X0 242 aa0.03□□□□□ -2.4
CD44-215ENST00000525241 SCP2D1Q9UJQ7 156 aa0.03□□□□□ -2.4
CD44-215ENST00000525241 LY75O60449 1722 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 DLEU1O43261 78 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 Q56UQ5 140 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 Q5VSD8 79 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 BAGE3Q86Y29 109 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 COPS9Q8WXC6 57 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 PP6455Q8WZ26 134 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 LINC00472Q9H8W2 130 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 LENEPQ9Y5L5 61 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 MAGI1Q96QZ7 1491 aaPredicted RBP0.02□□□□□ -2.41
CD44-215ENST00000525241 UGGT2Q9NYU1 1516 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 SCN7AQ01118 1682 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 NHSQ6T4R5 1651 aa0.02□□□□□ -2.41
CD44-215ENST00000525241 OOSP1A8MZH6 123 aa0.01□□□□□ -2.41
CD44-215ENST00000525241 GCHFRP30047 84 aa0.01□□□□□ -2.41
CD44-215ENST00000525241 COX6A2Q02221 97 aa0.01□□□□□ -2.41
CD44-215ENST00000525241 Q5BKY6 102 aa0.01□□□□□ -2.41
CD44-215ENST00000525241 RPL13AP3Q6NVV1 102 aa0.01□□□□□ -2.41
CD44-215ENST00000525241 SPANXDQ9BXN6 97 aa0.01□□□□□ -2.41
CD44-215ENST00000525241 NAIPQ13075 1403 aa0.01□□□□□ -2.41
CD44-215ENST00000525241 TOPAZ1Q8N9V7 1692 aa0.01□□□□□ -2.41
CD44-215ENST00000525241 ITSN2Q9NZM3 1697 aa0.01□□□□□ -2.41
CD44-215ENST00000525241 MIF4GDA9UHW6 222 aaKnown RBP0□□□□□ -2.41
CD44-215ENST00000525241 FAM25AB3EWG3 89 aa0□□□□□ -2.41
CD44-215ENST00000525241 FAM25CB3EWG5 89 aa0□□□□□ -2.41
CD44-215ENST00000525241 FAM25GB3EWG6 89 aa0□□□□□ -2.41
CD44-215ENST00000525241 TNFP01375 233 aa0□□□□□ -2.41
CD44-215ENST00000525241 SMR3BP02814 79 aaPredicted RBP0□□□□□ -2.41
CD44-215ENST00000525241 LRRC9Q6ZRR7 1453 aa0□□□□□ -2.41
CD44-215ENST00000525241 SSBP3-AS1Q7Z2R9 100 aa0□□□□□ -2.41
CD44-215ENST00000525241 PLEKHH2Q8IVE3 1493 aa0□□□□□ -2.41
CD44-215ENST00000525241 NDUFA4L2Q9NRX3 87 aa0□□□□□ -2.41
CD44-215ENST00000525241 SCN3BQ9NY72 215 aa0□□□□□ -2.41
CD44-215ENST00000525241 DIP2CQ9Y2E4 1556 aa0□□□□□ -2.41
CD44-215ENST00000525241 LTN1O94822 1766 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 ITSN1Q15811 1721 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 KIF14Q15058 1648 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 SAMD9Q5K651 1589 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 DUOX2Q9NRD8 1548 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 ARHGEF12Q9NZN5 1544 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 ZNF815PA8K554 130 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 M0R135 149 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 PIN1P1O15428 100 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 PPP1R17O96001 155 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 SARNPP82979 210 aaKnown RBP-0.01□□□□□ -2.41
CD44-215ENST00000525241 CATR1Q13166 79 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 CFAP126Q5VTH2 177 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 CYP4F30PQ9H0H9 118 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 LINC00474Q9P2X8 69 aa-0.01□□□□□ -2.41
CD44-215ENST00000525241 POLR1AO95602 1720 aaPredicted RBP-0.01□□□□□ -2.41
CD44-215ENST00000525241 MAGI3Q5TCQ9 1506 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 LINC00587B1AMM8 73 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 APOC2P02655 101 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 C10orf128Q5T292 105 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 COMMD6Q7Z4G1 85 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 C5orf38Q86SI9 138 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 UBE2DNLQ8IWF7 75 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 TTC9CQ8N5M4 171 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 TSLPQ969D9 159 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 C2orf88Q9BSF0 95 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 CNFNQ9BYD5 112 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 LRRC37AA6NMS7 1700 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 TIAM1Q13009 1591 aa-0.02□□□□□ -2.41
CD44-215ENST00000525241 PZPP20742 1482 aa-0.03□□□□□ -2.41
CD44-215ENST00000525241 ATP7BP35670 1465 aa-0.03□□□□□ -2.41
CD44-215ENST00000525241 TRBV7-3A0A075B6L6 115 aa-0.03□□□□□ -2.41
CD44-215ENST00000525241 AKAIN1P0CW23 69 aa-0.03□□□□□ -2.41
CD44-215ENST00000525241 PPP3R2Q96LZ3 170 aa-0.03□□□□□ -2.41
CD44-215ENST00000525241 NEXMIFQ5QGS0 1516 aa-0.03□□□□□ -2.41
CD44-215ENST00000525241 ZFYVE16Q7Z3T8 1539 aa-0.03□□□□□ -2.41
CD44-215ENST00000525241 RGPD3A6NKT7 1758 aaPredicted RBP-0.04□□□□□ -2.42
CD44-215ENST00000525241 RGPD4Q7Z3J3 1758 aa-0.04□□□□□ -2.42
CD44-215ENST00000525241 UBR1Q8IWV7 1749 aa-0.04□□□□□ -2.42
CD44-215ENST00000525241 SPAG11BQ08648 103 aa-0.04□□□□□ -2.42
CD44-215ENST00000525241 SPAG11AQ6PDA7 123 aa-0.04□□□□□ -2.42
CD44-215ENST00000525241 C8orf59Q8N0T1 100 aaPredicted RBP-0.04□□□□□ -2.42
CD44-215ENST00000525241 AQP10Q96PS8 301 aa-0.04□□□□□ -2.42
CD44-215ENST00000525241 SPRR2GQ9BYE4 73 aa-0.04□□□□□ -2.42
CD44-215ENST00000525241 IER3IP1Q9Y5U9 82 aa-0.04□□□□□ -2.42
CD44-215ENST00000525241 R4GMQ9 66 aa-0.04□□□□□ -2.42
CD44-215ENST00000525241 SUPT6HQ7KZ85 1726 aaKnown RBP-0.04□□□□□ -2.42
CD44-215ENST00000525241 C5P01031 1676 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 IQGAP1P46940 1657 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 PTPN23Q9H3S7 1636 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 I3L2K1 104 aa-0.05□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms