RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 UBE2AP49459 152 aa9.84□□□□□ -0.83
LSM1-205ENST00000523511 PRR26Q8N8Z3 221 aa9.83□□□□□ -0.84
LSM1-205ENST00000523511 IGKV2-28A0A075B6P5 120 aa9.82□□□□□ -0.84
LSM1-205ENST00000523511 DPM2O94777 84 aa9.82□□□□□ -0.84
LSM1-205ENST00000523511 IGKV2D-28P01615 120 aa9.82□□□□□ -0.84
LSM1-205ENST00000523511 VPREB1P12018 145 aa9.82□□□□□ -0.84
LSM1-205ENST00000523511 PLEKHB2Q96CS7 222 aa9.82□□□□□ -0.84
LSM1-205ENST00000523511 NDUFA12Q9UI09 145 aa9.82□□□□□ -0.84
LSM1-205ENST00000523511 A0A0U1RRA0 63 aa9.8□□□□□ -0.84
LSM1-205ENST00000523511 LEPROTO15243 131 aa9.8□□□□□ -0.84
LSM1-205ENST00000523511 IGKCP01834 107 aa9.8□□□□□ -0.84
LSM1-205ENST00000523511 M0R378 163 aa9.79□□□□□ -0.84
LSM1-205ENST00000523511 SMIM13P0DJ93 91 aa9.79□□□□□ -0.84
LSM1-205ENST00000523511 S100A12P80511 92 aa9.79□□□□□ -0.84
LSM1-205ENST00000523511 HMCN2Q8NDA2 5059 aa9.78□□□□□ -0.84
LSM1-205ENST00000523511 KRTAP1-4P0C5Y4 121 aa9.78□□□□□ -0.84
LSM1-205ENST00000523511 NMUP48645 174 aa9.78□□□□□ -0.84
LSM1-205ENST00000523511 LINC00310P59036 64 aa9.78□□□□□ -0.84
LSM1-205ENST00000523511 LGALS3P17931 250 aaKnown RBP9.77□□□□□ -0.85
LSM1-205ENST00000523511 FAM19A1Q7Z5A9 133 aa9.77□□□□□ -0.85
LSM1-205ENST00000523511 TMEM126AQ9H061 195 aa9.77□□□□□ -0.85
LSM1-205ENST00000523511 J3QQQ9 107 aa9.76□□□□□ -0.85
LSM1-205ENST00000523511 CRYGAP11844 174 aa9.76□□□□□ -0.85
LSM1-205ENST00000523511 BOD1L2Q8IYS8 172 aa9.76□□□□□ -0.85
LSM1-205ENST00000523511 MIR7-3HGQ8N6C7 128 aa9.76□□□□□ -0.85
LSM1-205ENST00000523511 IGKV2D-26A0A0A0MRZ7 120 aa9.75□□□□□ -0.85
LSM1-205ENST00000523511 SCO1O75880 301 aa9.75□□□□□ -0.85
LSM1-205ENST00000523511 TNXBP22105 4242 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST1H2BKO60814 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST1H2BJP06899 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST1H2BOP23527 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST1H2BBP33778 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST1H2BDP58876 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST1H2BCP62807 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST2H2BEQ16778 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST1H2BHQ93079 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST1H2BNQ99877 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 HIST1H2BMQ99879 126 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 MIEN1Q9BRT3 115 aa9.74□□□□□ -0.85
LSM1-205ENST00000523511 PMCHL2Q9BQD1 86 aa9.73□□□□□ -0.85
LSM1-205ENST00000523511 TMEM238C9JI98 176 aa9.71□□□□□ -0.86
LSM1-205ENST00000523511 SYS1-DBNDD2H3BUS1 97 aa9.71□□□□□ -0.86
LSM1-205ENST00000523511 KRTAP13-1Q8IUC0 172 aa9.71□□□□□ -0.86
LSM1-205ENST00000523511 TYMSOSQ8TAI1 123 aa9.71□□□□□ -0.86
LSM1-205ENST00000523511 FAM229BQ4G0N7 80 aa9.7□□□□□ -0.86
LSM1-205ENST00000523511 PET117Q6UWS5 81 aa9.7□□□□□ -0.86
LSM1-205ENST00000523511 E9PLD3 99 aa9.69□□□□□ -0.86
LSM1-205ENST00000523511 PRYO14603 147 aa9.69□□□□□ -0.86
LSM1-205ENST00000523511 PRLHP81277 87 aa9.69□□□□□ -0.86
LSM1-205ENST00000523511 LOC107984156A0A0G2JMH3 177 aa9.68□□□□□ -0.86
LSM1-205ENST00000523511 TSPEAR-AS2P59090 65 aa9.68□□□□□ -0.86
LSM1-205ENST00000523511 ARL17AQ8IVW1 177 aa9.68□□□□□ -0.86
LSM1-205ENST00000523511 Q8NDZ9 215 aa9.68□□□□□ -0.86
LSM1-205ENST00000523511 NCR3O14931 201 aa9.67□□□□□ -0.86
LSM1-205ENST00000523511 HIGD2AQ9BW72 106 aa9.67□□□□□ -0.86
LSM1-205ENST00000523511 KCNQ1DNQ9H478 68 aa9.67□□□□□ -0.86
LSM1-205ENST00000523511 ZNF706Q9Y5V0 76 aaPredicted RBP9.67□□□□□ -0.86
LSM1-205ENST00000523511 TRBV10-2A0A0K0K1G8 114 aa9.66□□□□□ -0.86
LSM1-205ENST00000523511 ETDCA0A1B0GVM5 59 aa9.66□□□□□ -0.86
LSM1-205ENST00000523511 AKR1D1P51857 326 aa9.66□□□□□ -0.86
LSM1-205ENST00000523511 LINC00337Q8N6G1 96 aa9.66□□□□□ -0.86
LSM1-205ENST00000523511 NDUFC2O95298 119 aa9.65□□□□□ -0.86
LSM1-205ENST00000523511 CBY1Q9Y3M2 126 aa9.65□□□□□ -0.86
LSM1-205ENST00000523511 A0A087X002 238 aa9.64□□□□□ -0.87
LSM1-205ENST00000523511 C20orf202A1L168 122 aa9.64□□□□□ -0.87
LSM1-205ENST00000523511 COA6Q5JTJ3 125 aaKnown RBP9.64□□□□□ -0.87
LSM1-205ENST00000523511 S100A7L2Q5SY68 101 aa9.64□□□□□ -0.87
LSM1-205ENST00000523511 LINC01545Q5VT33 79 aa9.64□□□□□ -0.87
LSM1-205ENST00000523511 DAND5Q8N907 189 aa9.64□□□□□ -0.87
LSM1-205ENST00000523511 SPANXB1Q9NS25 103 aaPredicted RBP9.64□□□□□ -0.87
LSM1-205ENST00000523511 A0A0J9YXY3 114 aa9.63□□□□□ -0.87
LSM1-205ENST00000523511 DDTP30046 118 aa9.63□□□□□ -0.87
LSM1-205ENST00000523511 ANAPC11Q9NYG5 84 aa9.63□□□□□ -0.87
LSM1-205ENST00000523511 TRBV10-3A0A0K0K1G6 114 aa9.62□□□□□ -0.87
LSM1-205ENST00000523511 KRTDAPP60985 99 aa9.62□□□□□ -0.87
LSM1-205ENST00000523511 SPRR1AP35321 89 aa9.61□□□□□ -0.87
LSM1-205ENST00000523511 TSPAN13O95857 204 aa9.6□□□□□ -0.87
LSM1-205ENST00000523511 C3orf79P0CE67 100 aa9.6□□□□□ -0.87
LSM1-205ENST00000523511 S100A1P23297 94 aa9.6□□□□□ -0.87
LSM1-205ENST00000523511 HINT1P49773 126 aaPredicted RBP9.6□□□□□ -0.87
LSM1-205ENST00000523511 CTAG1AP78358 180 aa9.6□□□□□ -0.87
LSM1-205ENST00000523511 PRR4Q16378 134 aa9.6□□□□□ -0.87
LSM1-205ENST00000523511 UBR4Q5T4S7 5183 aa9.59□□□□□ -0.87
LSM1-205ENST00000523511 TIMM17BO60830 172 aa9.59□□□□□ -0.87
LSM1-205ENST00000523511 JOSD1Q15040 202 aaPredicted RBP9.58□□□□□ -0.88
LSM1-205ENST00000523511 ZNF815PA8K554 130 aa9.57□□□□□ -0.88
LSM1-205ENST00000523511 LINC00304Q8N9R0 145 aa9.57□□□□□ -0.88
LSM1-205ENST00000523511 SMCR5Q8TEV8 140 aa9.57□□□□□ -0.88
LSM1-205ENST00000523511 COPS9Q8WXC6 57 aa9.57□□□□□ -0.88
LSM1-205ENST00000523511 SPRR4Q96PI1 79 aa9.57□□□□□ -0.88
LSM1-205ENST00000523511 NPC2P61916 151 aa9.56□□□□□ -0.88
LSM1-205ENST00000523511 KRTAP13-2Q52LG2 175 aa9.56□□□□□ -0.88
LSM1-205ENST00000523511 C4orf48Q5BLP8 95 aa9.56□□□□□ -0.88
LSM1-205ENST00000523511 ADAMTSL4-AS1Q5T5F5 129 aa9.56□□□□□ -0.88
LSM1-205ENST00000523511 IGLV6-57P01721 117 aa9.55□□□□□ -0.88
LSM1-205ENST00000523511 SPAG11AQ6PDA7 123 aa9.55□□□□□ -0.88
LSM1-205ENST00000523511 SPANXCQ9NY87 97 aa9.55□□□□□ -0.88
LSM1-205ENST00000523511 TRAV23DV6A0A075B6W5 121 aa9.54□□□□□ -0.88
LSM1-205ENST00000523511 B5MCH6 92 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms