RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 NKAPP1Q8N9T2 125 aa9.42□□□□□ -0.9
NUP54-213ENST00000513352 C7orf33Q8WU49 177 aa9.42□□□□□ -0.9
NUP54-213ENST00000513352 MIEN1Q9BRT3 115 aa9.42□□□□□ -0.9
NUP54-213ENST00000513352 TIMM17BO60830 172 aa9.41□□□□□ -0.9
NUP54-213ENST00000513352 PHF5AQ7RTV0 110 aaKnown RBP9.41□□□□□ -0.9
NUP54-213ENST00000513352 TMEM238C9JI98 176 aa9.4□□□□□ -0.9
NUP54-213ENST00000513352 ADAMTSL4-AS1Q5T5F5 129 aa9.4□□□□□ -0.9
NUP54-213ENST00000513352 BOD1L2Q8IYS8 172 aa9.4□□□□□ -0.9
NUP54-213ENST00000513352 FAM229AH3BQW9 127 aa9.39□□□□□ -0.91
NUP54-213ENST00000513352 COX8AP10176 69 aa9.39□□□□□ -0.91
NUP54-213ENST00000513352 RPL24P83731 157 aaKnown RBP9.39□□□□□ -0.91
NUP54-213ENST00000513352 KRTAP7-1Q8IUC3 87 aa9.39□□□□□ -0.91
NUP54-213ENST00000513352 C14orf144Q96I85 54 aa9.39□□□□□ -0.91
NUP54-213ENST00000513352 TP73-AS1Q9UF72 201 aa9.39□□□□□ -0.91
NUP54-213ENST00000513352 APOBP04114 4563 aaKnown RBP9.38□□□□□ -0.91
NUP54-213ENST00000513352 UBE2BP63146 152 aa9.38□□□□□ -0.91
NUP54-213ENST00000513352 LITAFQ99732 161 aa9.38□□□□□ -0.91
NUP54-213ENST00000513352 PLA2G2DQ9UNK4 145 aa9.38□□□□□ -0.91
NUP54-213ENST00000513352 C22orf24Q9Y442 160 aa9.38□□□□□ -0.91
NUP54-213ENST00000513352 KIAA1109Q2LD37 5005 aa9.38□□□□□ -0.91
NUP54-213ENST00000513352 GAGE10A6NGK3 116 aa9.37□□□□□ -0.91
NUP54-213ENST00000513352 VPREB1P12018 145 aa9.37□□□□□ -0.91
NUP54-213ENST00000513352 S100A12P80511 92 aa9.37□□□□□ -0.91
NUP54-213ENST00000513352 DNAH8Q96JB1 4490 aa9.36□□□□□ -0.91
NUP54-213ENST00000513352 EPM2AB3EWF7 344 aa9.36□□□□□ -0.91
NUP54-213ENST00000513352 NCR3O14931 201 aa9.36□□□□□ -0.91
NUP54-213ENST00000513352 RPL37AP61513 92 aaKnown RBP9.36□□□□□ -0.91
NUP54-213ENST00000513352 LBHQ53QV2 105 aaPredicted RBP9.36□□□□□ -0.91
NUP54-213ENST00000513352 Q5VSD8 79 aa9.36□□□□□ -0.91
NUP54-213ENST00000513352 MRPL55Q7Z7F7 128 aaKnown RBP9.36□□□□□ -0.91
NUP54-213ENST00000513352 Q8NDZ9 215 aa9.36□□□□□ -0.91
NUP54-213ENST00000513352 IGLV5-37A0A075B6J1 123 aa9.35□□□□□ -0.91
NUP54-213ENST00000513352 SLC25A34Q6PIV7 304 aa9.35□□□□□ -0.91
NUP54-213ENST00000513352 Q8N1X5 172 aa9.35□□□□□ -0.91
NUP54-213ENST00000513352 LINC00308Q8TCZ7 52 aa9.35□□□□□ -0.91
NUP54-213ENST00000513352 SPANXDQ9BXN6 97 aa9.35□□□□□ -0.91
NUP54-213ENST00000513352 SPANXCQ9NY87 97 aa9.35□□□□□ -0.91
NUP54-213ENST00000513352 LOC105371267A0A1B0GV96 52 aa9.34□□□□□ -0.91
NUP54-213ENST00000513352 PLA2G1BP04054 148 aaKnown RBP9.34□□□□□ -0.91
NUP54-213ENST00000513352 SRSF9Q13242 221 aaKnown RBP eCLIP9.34□□□□□ -0.91
NUP54-213ENST00000513352 SOSTDC1Q6X4U4 206 aa9.34□□□□□ -0.91
NUP54-213ENST00000513352 RYR1P21817 5038 aa9.34□□□□□ -0.91
NUP54-213ENST00000513352 RPL37AP8A6NKH3 93 aa9.33□□□□□ -0.92
NUP54-213ENST00000513352 PRR3P79522 188 aaKnown RBP9.33□□□□□ -0.92
NUP54-213ENST00000513352 LOC107984156A0A0G2JMH3 177 aa9.32□□□□□ -0.92
NUP54-213ENST00000513352 DLEU1O43261 78 aa9.32□□□□□ -0.92
NUP54-213ENST00000513352 EIF4EBP3O60516 100 aaPredicted RBP9.32□□□□□ -0.92
NUP54-213ENST00000513352 SMIM6P0DI80 62 aa9.32□□□□□ -0.92
NUP54-213ENST00000513352 ARL17AQ8IVW1 177 aa9.32□□□□□ -0.92
NUP54-213ENST00000513352 COPS9Q8WXC6 57 aa9.32□□□□□ -0.92
NUP54-213ENST00000513352 LINC00167Q96N53 147 aa9.32□□□□□ -0.92
NUP54-213ENST00000513352 HSPG2P98160 4391 aa9.32□□□□□ -0.92
NUP54-213ENST00000513352 IGKV2-28A0A075B6P5 120 aa9.31□□□□□ -0.92
NUP54-213ENST00000513352 A6NJY4 79 aa9.31□□□□□ -0.92
NUP54-213ENST00000513352 M0R378 163 aa9.31□□□□□ -0.92
NUP54-213ENST00000513352 IGKV2D-28P01615 120 aa9.31□□□□□ -0.92
NUP54-213ENST00000513352 Q6ZVH6 145 aa9.31□□□□□ -0.92
NUP54-213ENST00000513352 IFITM1P13164 125 aa9.3□□□□□ -0.92
NUP54-213ENST00000513352 MUSTN1Q8IVN3 82 aa9.3□□□□□ -0.92
NUP54-213ENST00000513352 HIST1H4GQ99525 98 aa9.3□□□□□ -0.92
NUP54-213ENST00000513352 KRTAP17-1Q9BYP8 105 aa9.3□□□□□ -0.92
NUP54-213ENST00000513352 SPANXB1Q9NS25 103 aaPredicted RBP9.3□□□□□ -0.92
NUP54-213ENST00000513352 KRTAP11-1Q8IUC1 163 aa9.29□□□□□ -0.92
NUP54-213ENST00000513352 PSORS1C2Q9UIG4 136 aa9.29□□□□□ -0.92
NUP54-213ENST00000513352 NDUFC2O95298 119 aa9.28□□□□□ -0.92
NUP54-213ENST00000513352 C1orf137Q5JT78 98 aa9.28□□□□□ -0.92
NUP54-213ENST00000513352 S100A7L2Q5SY68 101 aa9.27□□□□□ -0.93
NUP54-213ENST00000513352 OR13C6PQ8NH95 151 aa9.26□□□□□ -0.93
NUP54-213ENST00000513352 PRO1933Q9H354 126 aa9.26□□□□□ -0.93
NUP54-213ENST00000513352 IGLV1-50A0A075B6I6 118 aa9.25□□□□□ -0.93
NUP54-213ENST00000513352 TRBV10-3A0A0K0K1G6 114 aa9.25□□□□□ -0.93
NUP54-213ENST00000513352 TRBV10-2A0A0K0K1G8 114 aa9.25□□□□□ -0.93
NUP54-213ENST00000513352 DDTP30046 118 aa9.25□□□□□ -0.93
NUP54-213ENST00000513352 C2orf91Q6ZV80 131 aa9.25□□□□□ -0.93
NUP54-213ENST00000513352 HIGD1BQ9P298 99 aa9.25□□□□□ -0.93
NUP54-213ENST00000513352 UQCR10Q9UDW1 63 aa9.25□□□□□ -0.93
NUP54-213ENST00000513352 SMCPP49901 116 aaPredicted RBP9.23□□□□□ -0.93
NUP54-213ENST00000513352 LINC00518Q8N0U6 118 aa9.23□□□□□ -0.93
NUP54-213ENST00000513352 C12orf57Q99622 126 aa9.23□□□□□ -0.93
NUP54-213ENST00000513352 KRTAP4-5Q9BYR2 181 aa9.23□□□□□ -0.93
NUP54-213ENST00000513352 PPDPFQ9H3Y8 114 aa9.23□□□□□ -0.93
NUP54-213ENST00000513352 KRTAP10-4P60372 401 aaPredicted RBP9.22□□□□□ -0.93
NUP54-213ENST00000513352 REG3GQ6UW15 175 aa9.22□□□□□ -0.93
NUP54-213ENST00000513352 A4D1N5 150 aa9.21□□□□□ -0.94
NUP54-213ENST00000513352 PRYO14603 147 aa9.21□□□□□ -0.94
NUP54-213ENST00000513352 HNRNPA3P51991 378 aaKnown RBP9.21□□□□□ -0.94
NUP54-213ENST00000513352 TMEM126AQ9H061 195 aa9.21□□□□□ -0.94
NUP54-213ENST00000513352 HERC2O95714 4834 aa9.2□□□□□ -0.94
NUP54-213ENST00000513352 A6NDN8 102 aa9.2□□□□□ -0.94
NUP54-213ENST00000513352 BCE1O60756 84 aa9.2□□□□□ -0.94
NUP54-213ENST00000513352 IGLV7-43P04211 117 aa9.2□□□□□ -0.94
NUP54-213ENST00000513352 UBE2AP49459 152 aa9.2□□□□□ -0.94
NUP54-213ENST00000513352 IGLV6-57P01721 117 aa9.19□□□□□ -0.94
NUP54-213ENST00000513352 TAL2Q16559 108 aa9.19□□□□□ -0.94
NUP54-213ENST00000513352 FAM19A1Q7Z5A9 133 aa9.19□□□□□ -0.94
NUP54-213ENST00000513352 LINC00337Q8N6G1 96 aa9.19□□□□□ -0.94
NUP54-213ENST00000513352 TRAV23DV6A0A075B6W5 121 aa9.18□□□□□ -0.94
NUP54-213ENST00000513352 ETDCA0A1B0GVM5 59 aa9.18□□□□□ -0.94
NUP54-213ENST00000513352 INAFM2P0DMQ5 153 aa9.18□□□□□ -0.94
NUP54-213ENST00000513352 CEND1Q8N111 149 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms