RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 DNAL4O96015 105 aa11.03□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 LYRM9A8MSI8 78 aa11.03□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 LECT2O14960 151 aa11.03□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 OBSCN-AS1Q96MR7 158 aa11.03□□□□□ -0.64
MSH5-SAPCD1-208ENST00000498473 NDUFC2-KCTD14E9PQ53 114 aa11.02□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 LINC00269Q8N2A0 174 aa11.02□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 Q8N3U1 123 aa11.02□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 DEFB4AO15263 64 aa11.01□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 PRB2P02812 416 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 NANOS2P60321 138 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 CD164L2Q6UWJ8 174 aa11□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 DEFB135Q30KP9 77 aa11□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 PRR3P79522 188 aaKnown RBP10.99□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 CHCHD10Q8WYQ3 142 aaPredicted RBP10.99□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 SLPIP03973 132 aa10.99□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 C14orf132Q9NPU4 83 aa10.99□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 C9orf66Q5T8R8 295 aa10.98□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 IGHV4-28A0A0C4DH34 117 aa10.97□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 C1orf43Q9BWL3 253 aa10.97□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 IGLV10-54A0A075B6I4 117 aa10.97□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 SEC61GP60059 68 aa10.96□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 REG3AQ06141 175 aa10.96□□□□□ -0.65
MSH5-SAPCD1-208ENST00000498473 DNAH3Q8TD57 4116 aa10.96□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 NDUFC2O95298 119 aa10.96□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 ANGP03950 147 aaKnown RBP10.96□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 COX17Q14061 63 aa10.96□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 LINC00167Q96N53 147 aa10.96□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 CELA1Q9UNI1 258 aa10.96□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 NCR3O14931 201 aa10.95□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 C9orf116Q5BN46 136 aaPredicted RBP10.95□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 EPM2AB3EWF7 344 aa10.94□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 LINC00336Q6ZUF6 198 aa10.94□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 Q8NDZ9 215 aa10.94□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 DAD1P61803 113 aa10.94□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 Q8NAQ8 132 aa10.93□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 ORMDL1Q9P0S3 153 aa10.93□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 KRTAP10-11P60412 298 aa10.93□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 MEGF8Q7Z7M0 2845 aa10.92□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 APOC4P55056 127 aa10.92□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 Q6JHZ5 121 aa10.92□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 Q8N814 137 aa10.91□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 WFDC9Q8NEX5 89 aa10.91□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 LINC00846Q9NV44 126 aa10.91□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 V9GYY9 64 aa10.9□□□□□ -0.66
MSH5-SAPCD1-208ENST00000498473 C10orf25Q5T742 122 aa10.89□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 SERP1Q9Y6X1 66 aa10.89□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 TENM3Q9P273 2699 aa10.89□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 MIFP14174 115 aa10.89□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 C6orf223Q8N319 242 aa10.89□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 COL7A1Q02388 2944 aa10.89□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 USP17L23D6RBM5 183 aa10.88□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 LELP1Q5T871 98 aa10.88□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 UNQ6190/PRO20217Q6UXQ8 127 aa10.88□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 PRKDCP78527 4128 aaKnown RBP10.86□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 CCKP06307 115 aa10.85□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 SPART-AS1P0CW21 52 aa10.85□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 HTN3P15516 51 aa10.85□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 SPAG11BQ08648 103 aa10.85□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 C6orf99Q4VX62 202 aa10.85□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 PRR34Q9NV39 138 aa10.85□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 PKIGQ9Y2B9 76 aa10.85□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 IGKV3D-7A0A0C4DH55 119 aa10.84□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 A0A0J9YWU9 116 aa10.84□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 FAM236DA0A1B0GTK5 79 aa10.84□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 IGHV4-30-4P0DP06 118 aa10.84□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 FAM236CP0DP71 79 aa10.84□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 ENHOQ6UWT2 76 aa10.84□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 KLK12Q9UKR0 248 aa10.84□□□□□ -0.67
MSH5-SAPCD1-208ENST00000498473 TMEM256-PLSCR3K7ERE1 68 aa10.83□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 JMJD7-PLA2G4BH0Y9G9 81 aa10.82□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 LINC00575Q6W349 94 aa10.82□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 TGP01266 2768 aa10.82□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 S100A7L2Q5SY68 101 aa10.81□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 MUC7Q8TAX7 377 aa10.81□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 SMIM26A0A096LP01 95 aa10.81□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 C1orf195Q5TG92 126 aa10.81□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 LYPD5Q6UWN5 251 aa10.8□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 IGLV6-57P01721 117 aa10.79□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 GVQW2A0A096LPI5 108 aaPredicted RBP10.78□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 KRTAP21-3Q3LHN1 58 aa10.78□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 A0A087WVE0 104 aa10.77□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 C6orf48Q9UBA6 75 aa10.77□□□□□ -0.68
MSH5-SAPCD1-208ENST00000498473 EGFEM1PQ0D2K5 195 aa10.76□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 GHRHP01286 108 aa10.73□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 ATP5EP2Q5VTU8 51 aa10.73□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 FBN3Q75N90 2809 aa10.73□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 K7EIL1 84 aa10.73□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 TRBV10-3A0A0K0K1G6 114 aa10.72□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 BCE1O60756 84 aa10.72□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 XAGE1AQ9HD64 81 aa10.72□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 ZNF561-AS1K7EIQ3 104 aa10.72□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 KRTAP26-1Q6PEX3 210 aa10.72□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 Q6ZQT0 140 aa10.72□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 FP248Q71RG6 208 aaPredicted RBP10.72□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 WFDC10BQ8IUB3 73 aa10.72□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 RETNQ9HD89 108 aa10.72□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 STAB2Q8WWQ8 2551 aa10.71□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 H7BZZ5 65 aa10.71□□□□□ -0.69
MSH5-SAPCD1-208ENST00000498473 RBM3P98179 157 aaKnown RBP10.7□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 C20orf197Q8N268 126 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 205.5 ms