RNA–Protein interactions for RNA: ENST00000495835.1

HLA-C-209, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,073 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-209ENST00000495835 RNF213Q63HN8 5207 aa14.35□□□□□ -0.11
HLA-C-209ENST00000495835 LINC00587B1AMM8 73 aa14.34□□□□□ -0.11
HLA-C-209ENST00000495835 A0A087X002 238 aa14.32□□□□□ -0.12
HLA-C-209ENST00000495835 LEPROTL1O95214 131 aa14.32□□□□□ -0.12
HLA-C-209ENST00000495835 FAM229BQ4G0N7 80 aa14.32□□□□□ -0.12
HLA-C-209ENST00000495835 ATP6V1G1O75348 118 aa14.31□□□□□ -0.12
HLA-C-209ENST00000495835 TYMSOSQ8TAI1 123 aa14.31□□□□□ -0.12
HLA-C-209ENST00000495835 LPAP08519 4548 aa14.31□□□□□ -0.12
HLA-C-209ENST00000495835 Q8NDZ9 215 aa14.3□□□□□ -0.12
HLA-C-209ENST00000495835 M0R378 163 aa14.29□□□□□ -0.12
HLA-C-209ENST00000495835 SERF1AO75920 110 aa14.29□□□□□ -0.12
HLA-C-209ENST00000495835 FAM19A1Q7Z5A9 133 aa14.29□□□□□ -0.12
HLA-C-209ENST00000495835 TMEM238C9JI98 176 aa14.28□□□□□ -0.12
HLA-C-209ENST00000495835 MYMXA0A1B0GTQ4 84 aa14.27□□□□□ -0.13
HLA-C-209ENST00000495835 SMIM13P0DJ93 91 aa14.27□□□□□ -0.13
HLA-C-209ENST00000495835 MEIG1Q5JSS6 88 aa14.27□□□□□ -0.13
HLA-C-209ENST00000495835 NDUFA12Q9UI09 145 aa14.27□□□□□ -0.13
HLA-C-209ENST00000495835 HSPB8Q9UJY1 196 aa14.27□□□□□ -0.13
HLA-C-209ENST00000495835 A0A0U1RRA0 63 aa14.26□□□□□ -0.13
HLA-C-209ENST00000495835 PLNP26678 52 aa14.26□□□□□ -0.13
HLA-C-209ENST00000495835 LINC00310P59036 64 aa14.26□□□□□ -0.13
HLA-C-209ENST00000495835 PRLHP81277 87 aa14.26□□□□□ -0.13
HLA-C-209ENST00000495835 SLC7A5P1Q8MH63 180 aa14.26□□□□□ -0.13
HLA-C-209ENST00000495835 MAP1LC3CQ9BXW4 147 aa14.26□□□□□ -0.13
HLA-C-209ENST00000495835 COLCA2A8K830 154 aa14.24□□□□□ -0.13
HLA-C-209ENST00000495835 IGKV2D-26A0A0A0MRZ7 120 aa14.23□□□□□ -0.13
HLA-C-209ENST00000495835 H0Y8G0 127 aa14.23□□□□□ -0.13
HLA-C-209ENST00000495835 LEPROTO15243 131 aa14.23□□□□□ -0.13
HLA-C-209ENST00000495835 MIR7-3HGQ8N6C7 128 aa14.23□□□□□ -0.13
HLA-C-209ENST00000495835 PLEKHB2Q96CS7 222 aa14.23□□□□□ -0.13
HLA-C-209ENST00000495835 CTAG1AP78358 180 aa14.22□□□□□ -0.13
HLA-C-209ENST00000495835 PRR4Q16378 134 aa14.22□□□□□ -0.13
HLA-C-209ENST00000495835 BOD1L2Q8IYS8 172 aa14.22□□□□□ -0.13
HLA-C-209ENST00000495835 ANAPC11Q9NYG5 84 aa14.22□□□□□ -0.13
HLA-C-209ENST00000495835 KRTAP13-2Q52LG2 175 aa14.21□□□□□ -0.13
HLA-C-209ENST00000495835 DPM2O94777 84 aa14.2□□□□□ -0.14
HLA-C-209ENST00000495835 LOC107984156A0A0G2JMH3 177 aa14.19□□□□□ -0.14
HLA-C-209ENST00000495835 PRYO14603 147 aa14.19□□□□□ -0.14
HLA-C-209ENST00000495835 HERVK_113P61574 105 aa14.19□□□□□ -0.14
HLA-C-209ENST00000495835 ARL17AQ8IVW1 177 aa14.19□□□□□ -0.14
HLA-C-209ENST00000495835 TSPAN13O95857 204 aa14.18□□□□□ -0.14
HLA-C-209ENST00000495835 FABP4P15090 132 aa14.18□□□□□ -0.14
HLA-C-209ENST00000495835 NMUP48645 174 aa14.18□□□□□ -0.14
HLA-C-209ENST00000495835 KCNQ1DNQ9H478 68 aa14.17□□□□□ -0.14
HLA-C-209ENST00000495835 J3QQQ9 107 aa14.16□□□□□ -0.14
HLA-C-209ENST00000495835 IGKCP01834 107 aa14.16□□□□□ -0.14
HLA-C-209ENST00000495835 LINC00337Q8N6G1 96 aa14.16□□□□□ -0.14
HLA-C-209ENST00000495835 SPRR1AP35321 89 aa14.15□□□□□ -0.14
HLA-C-209ENST00000495835 TSPEAR-AS2P59090 65 aa14.15□□□□□ -0.14
HLA-C-209ENST00000495835 HIGD2AQ9BW72 106 aa14.15□□□□□ -0.14
HLA-C-209ENST00000495835 S100A12P80511 92 aa14.14□□□□□ -0.15
HLA-C-209ENST00000495835 LINC00304Q8N9R0 145 aa14.14□□□□□ -0.15
HLA-C-209ENST00000495835 ZNF706Q9Y5V0 76 aaPredicted RBP14.13□□□□□ -0.15
HLA-C-209ENST00000495835 NCR3O14931 201 aa14.12□□□□□ -0.15
HLA-C-209ENST00000495835 TRBV10-2A0A0K0K1G8 114 aa14.11□□□□□ -0.15
HLA-C-209ENST00000495835 LGALS3P17931 250 aaKnown RBP14.11□□□□□ -0.15
HLA-C-209ENST00000495835 KRTAP4-16G5E9R7 235 aaPredicted RBP14.09□□□□□ -0.15
HLA-C-209ENST00000495835 SPRR4Q96PI1 79 aa14.09□□□□□ -0.15
HLA-C-209ENST00000495835 PMCHL2Q9BQD1 86 aa14.09□□□□□ -0.15
HLA-C-209ENST00000495835 TRBV10-3A0A0K0K1G6 114 aa14.08□□□□□ -0.16
HLA-C-209ENST00000495835 ETDCA0A1B0GVM5 59 aa14.08□□□□□ -0.16
HLA-C-209ENST00000495835 MIEN1Q9BRT3 115 aa14.07□□□□□ -0.16
HLA-C-209ENST00000495835 NDUFC2O95298 119 aa14.06□□□□□ -0.16
HLA-C-209ENST00000495835 E9PLD3 99 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST1H2BKO60814 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST1H2BJP06899 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST1H2BOP23527 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST1H2BBP33778 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST1H2BDP58876 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST1H2BCP62807 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST2H2BEQ16778 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.05□□□□□ -0.16
HLA-C-209ENST00000495835 DAND5Q8N907 189 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST1H2BHQ93079 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST1H2BNQ99877 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 HIST1H2BMQ99879 126 aa14.05□□□□□ -0.16
HLA-C-209ENST00000495835 SPAG11AQ6PDA7 123 aa14.04□□□□□ -0.16
HLA-C-209ENST00000495835 SPANXB1Q9NS25 103 aaPredicted RBP14.04□□□□□ -0.16
HLA-C-209ENST00000495835 SYS1-DBNDD2H3BUS1 97 aa14.03□□□□□ -0.16
HLA-C-209ENST00000495835 DDTP30046 118 aa14.03□□□□□ -0.16
HLA-C-209ENST00000495835 SMCR5Q8TEV8 140 aa14.03□□□□□ -0.16
HLA-C-209ENST00000495835 C3orf22Q8N5N4 141 aa14.02□□□□□ -0.17
HLA-C-209ENST00000495835 B5MCH6 92 aa14□□□□□ -0.17
HLA-C-209ENST00000495835 A0A0J9YXY3 114 aa13.99□□□□□ -0.17
HLA-C-209ENST00000495835 PET117Q6UWS5 81 aa13.98□□□□□ -0.17
HLA-C-209ENST00000495835 IGLV6-57P01721 117 aa13.97□□□□□ -0.17
HLA-C-209ENST00000495835 LINC00483Q53H64 154 aa13.97□□□□□ -0.17
HLA-C-209ENST00000495835 S100A7L2Q5SY68 101 aa13.97□□□□□ -0.17
HLA-C-209ENST00000495835 LINC01545Q5VT33 79 aa13.97□□□□□ -0.17
HLA-C-209ENST00000495835 C4orf48Q5BLP8 95 aa13.95□□□□□ -0.18
HLA-C-209ENST00000495835 CBY1Q9Y3M2 126 aa13.95□□□□□ -0.18
HLA-C-209ENST00000495835 ADAMTSL4-AS1Q5T5F5 129 aa13.94□□□□□ -0.18
HLA-C-209ENST00000495835 Q6ZRX8 168 aa13.94□□□□□ -0.18
HLA-C-209ENST00000495835 JOSD1Q15040 202 aaPredicted RBP13.93□□□□□ -0.18
HLA-C-209ENST00000495835 RETNLBQ9BQ08 111 aa13.93□□□□□ -0.18
HLA-C-209ENST00000495835 TIMM17BO60830 172 aa13.92□□□□□ -0.18
HLA-C-209ENST00000495835 TPRXLQ17RH7 258 aa13.92□□□□□ -0.18
HLA-C-209ENST00000495835 SOSTDC1Q6X4U4 206 aa13.92□□□□□ -0.18
HLA-C-209ENST00000495835 COA6Q5JTJ3 125 aaKnown RBP13.91□□□□□ -0.18
HLA-C-209ENST00000495835 TRAV23DV6A0A075B6W5 121 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms