RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 UNQ6190/PRO20217Q6UXQ8 127 aa11.44□□□□□ -0.58
CCDC88B-209ENST00000494080 CYSRT1A8MQ03 144 aa11.44□□□□□ -0.58
CCDC88B-209ENST00000494080 Q6ZTC4 211 aa11.44□□□□□ -0.58
CCDC88B-209ENST00000494080 TRAV10A0A0B4J240 114 aa11.43□□□□□ -0.58
CCDC88B-209ENST00000494080 A8MTW9 85 aa11.43□□□□□ -0.58
CCDC88B-209ENST00000494080 IGLV5-45A0A087WSX0 123 aa11.42□□□□□ -0.58
CCDC88B-209ENST00000494080 CELA1Q9UNI1 258 aa11.42□□□□□ -0.58
CCDC88B-209ENST00000494080 TEP1Q99973 2627 aaKnown RBP11.42□□□□□ -0.58
CCDC88B-209ENST00000494080 CHD6Q8TD26 2715 aa11.42□□□□□ -0.58
CCDC88B-209ENST00000494080 Q6ZVQ6 151 aa11.42□□□□□ -0.58
CCDC88B-209ENST00000494080 IGSF10Q6WRI0 2623 aa11.41□□□□□ -0.58
CCDC88B-209ENST00000494080 COX17Q14061 63 aa11.41□□□□□ -0.58
CCDC88B-209ENST00000494080 IGKV2-28A0A075B6P5 120 aa11.4□□□□□ -0.58
CCDC88B-209ENST00000494080 ZNF73O43830 326 aaPredicted RBP11.4□□□□□ -0.58
CCDC88B-209ENST00000494080 IGKV2D-28P01615 120 aa11.4□□□□□ -0.58
CCDC88B-209ENST00000494080 LINC01547P58512 204 aaPredicted RBP11.4□□□□□ -0.59
CCDC88B-209ENST00000494080 NDUFB1O75438 58 aa11.39□□□□□ -0.59
CCDC88B-209ENST00000494080 SEC61GP60059 68 aa11.39□□□□□ -0.59
CCDC88B-209ENST00000494080 ZNF575Q86XF7 245 aa11.39□□□□□ -0.59
CCDC88B-209ENST00000494080 MYO15AQ9UKN7 3530 aa11.38□□□□□ -0.59
CCDC88B-209ENST00000494080 A0A096LNT2 108 aa11.38□□□□□ -0.59
CCDC88B-209ENST00000494080 FLNCQ14315 2725 aa11.38□□□□□ -0.59
CCDC88B-209ENST00000494080 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.38□□□□□ -0.59
CCDC88B-209ENST00000494080 TNRC18O15417 2968 aaPredicted RBP11.37□□□□□ -0.59
CCDC88B-209ENST00000494080 FAM30AQ9NZY2 134 aa11.37□□□□□ -0.59
CCDC88B-209ENST00000494080 TRBV7-6A0A0J9YX20 115 aa11.36□□□□□ -0.59
CCDC88B-209ENST00000494080 TRBV10-3A0A0K0K1G6 114 aa11.36□□□□□ -0.59
CCDC88B-209ENST00000494080 H0Y9J4 135 aa11.36□□□□□ -0.59
CCDC88B-209ENST00000494080 TMEM254Q8TBM7 123 aa11.36□□□□□ -0.59
CCDC88B-209ENST00000494080 IGHV3OR16-9A0A0B4J2B5 98 aa11.36□□□□□ -0.59
CCDC88B-209ENST00000494080 COL12A1Q99715 3063 aa11.35□□□□□ -0.59
CCDC88B-209ENST00000494080 LINC00575Q6W349 94 aa11.34□□□□□ -0.59
CCDC88B-209ENST00000494080 PRYO14603 147 aa11.34□□□□□ -0.59
CCDC88B-209ENST00000494080 C6orf223Q8N319 242 aa11.34□□□□□ -0.59
CCDC88B-209ENST00000494080 KALRNO60229 2985 aa11.33□□□□□ -0.6
CCDC88B-209ENST00000494080 WFDC10BQ8IUB3 73 aa11.33□□□□□ -0.6
CCDC88B-209ENST00000494080 ZZEF1O43149 2961 aa11.33□□□□□ -0.6
CCDC88B-209ENST00000494080 A0A1B0GUV1 79 aa11.32□□□□□ -0.6
CCDC88B-209ENST00000494080 CFAP47Q6ZTR5 3102 aa11.32□□□□□ -0.6
CCDC88B-209ENST00000494080 LINC01561Q8N1V8 128 aa11.31□□□□□ -0.6
CCDC88B-209ENST00000494080 MUC7Q8TAX7 377 aa11.31□□□□□ -0.6
CCDC88B-209ENST00000494080 Q8N9L7 120 aa11.31□□□□□ -0.6
CCDC88B-209ENST00000494080 M0R378 163 aa11.31□□□□□ -0.6
CCDC88B-209ENST00000494080 M0R2N4 97 aa11.3□□□□□ -0.6
CCDC88B-209ENST00000494080 WFDC13Q8IUB5 93 aa11.3□□□□□ -0.6
CCDC88B-209ENST00000494080 RPL37AP8A6NKH3 93 aa11.3□□□□□ -0.6
CCDC88B-209ENST00000494080 LYPD5Q6UWN5 251 aa11.29□□□□□ -0.6
CCDC88B-209ENST00000494080 PMAIP1Q13794 54 aa11.29□□□□□ -0.6
CCDC88B-209ENST00000494080 LINC00336Q6ZUF6 198 aa11.29□□□□□ -0.6
CCDC88B-209ENST00000494080 PSPHP1O15172 72 aa11.28□□□□□ -0.6
CCDC88B-209ENST00000494080 C14orf177Q52M58 125 aa11.28□□□□□ -0.6
CCDC88B-209ENST00000494080 X6R8D5 127 aa11.28□□□□□ -0.6
CCDC88B-209ENST00000494080 DMXL1Q9Y485 3027 aa11.28□□□□□ -0.6
CCDC88B-209ENST00000494080 TEX15Q9BXT5 2789 aa11.27□□□□□ -0.61
CCDC88B-209ENST00000494080 C4orf48Q5BLP8 95 aa11.26□□□□□ -0.61
CCDC88B-209ENST00000494080 LOC400499M0QZD8 3231 aa11.26□□□□□ -0.61
CCDC88B-209ENST00000494080 SETXQ7Z333 2677 aaKnown RBP11.25□□□□□ -0.61
CCDC88B-209ENST00000494080 CXCL6P80162 114 aa11.25□□□□□ -0.61
CCDC88B-209ENST00000494080 ESRGQ1W209 222 aa11.25□□□□□ -0.61
CCDC88B-209ENST00000494080 TACC2O95359 2948 aa11.24□□□□□ -0.61
CCDC88B-209ENST00000494080 IL17DQ8TAD2 202 aa11.24□□□□□ -0.61
CCDC88B-209ENST00000494080 B9D2Q9BPU9 175 aa11.24□□□□□ -0.61
CCDC88B-209ENST00000494080 CHKB-CPT1BH3BT56 60 aa11.23□□□□□ -0.61
CCDC88B-209ENST00000494080 EGFEM1PQ0D2K5 195 aa11.23□□□□□ -0.61
CCDC88B-209ENST00000494080 SPATA3Q8NHX4 192 aa11.23□□□□□ -0.61
CCDC88B-209ENST00000494080 LRBAP50851 2863 aa11.22□□□□□ -0.61
CCDC88B-209ENST00000494080 UNC79Q9P2D8 2635 aa11.21□□□□□ -0.61
CCDC88B-209ENST00000494080 A6NED7 52 aa11.21□□□□□ -0.62
CCDC88B-209ENST00000494080 TM2D3Q9BRN9 247 aa11.2□□□□□ -0.62
CCDC88B-209ENST00000494080 IGKV4-1P06312 121 aa11.2□□□□□ -0.62
CCDC88B-209ENST00000494080 KRTAP24-1Q3LI83 254 aa11.2□□□□□ -0.62
CCDC88B-209ENST00000494080 C9orf129Q5T035 196 aaKnown RBP11.2□□□□□ -0.62
CCDC88B-209ENST00000494080 Q6ZQT0 140 aa11.2□□□□□ -0.62
CCDC88B-209ENST00000494080 BCE1O60756 84 aa11.19□□□□□ -0.62
CCDC88B-209ENST00000494080 LINC00474Q9P2X8 69 aa11.18□□□□□ -0.62
CCDC88B-209ENST00000494080 C1orf137Q5JT78 98 aa11.18□□□□□ -0.62
CCDC88B-209ENST00000494080 KRTAP1-3Q8IUG1 177 aa11.18□□□□□ -0.62
CCDC88B-209ENST00000494080 DHRS4-AS1Q9P1J3 65 aa11.18□□□□□ -0.62
CCDC88B-209ENST00000494080 SPINK6Q6UWN8 80 aa11.18□□□□□ -0.62
CCDC88B-209ENST00000494080 LINC00208Q96KT6 92 aa11.17□□□□□ -0.62
CCDC88B-209ENST00000494080 C2orf48Q96LS8 159 aa11.17□□□□□ -0.62
CCDC88B-209ENST00000494080 Q6ZRU5 148 aa11.16□□□□□ -0.62
CCDC88B-209ENST00000494080 USP34Q70CQ2 3546 aa11.16□□□□□ -0.62
CCDC88B-209ENST00000494080 GCN1Q92616 2671 aaKnown RBP11.16□□□□□ -0.62
CCDC88B-209ENST00000494080 LINC01600Q96MT4 127 aa11.16□□□□□ -0.62
CCDC88B-209ENST00000494080 UBR5O95071 2799 aaPredicted RBP11.15□□□□□ -0.62
CCDC88B-209ENST00000494080 STAB1Q9NY15 2570 aa11.15□□□□□ -0.62
CCDC88B-209ENST00000494080 WIPF1O43516 503 aa11.13□□□□□ -0.63
CCDC88B-209ENST00000494080 NOTCH1P46531 2555 aa11.13□□□□□ -0.63
CCDC88B-209ENST00000494080 Q8NAQ8 132 aa11.13□□□□□ -0.63
CCDC88B-209ENST00000494080 COL6A5A8TX70 2615 aa11.13□□□□□ -0.63
CCDC88B-209ENST00000494080 GIG44P09565 113 aaPredicted RBP11.13□□□□□ -0.63
CCDC88B-209ENST00000494080 CSNK1G2-AS1Q8NCQ2 148 aa11.13□□□□□ -0.63
CCDC88B-209ENST00000494080 ITPR1Q14643 2758 aa11.12□□□□□ -0.63
CCDC88B-209ENST00000494080 C10orf25Q5T742 122 aa11.12□□□□□ -0.63
CCDC88B-209ENST00000494080 LOC110117498A0A087WWA1 95 aa11.1□□□□□ -0.63
CCDC88B-209ENST00000494080 PRR15LQ9BU68 103 aa11.1□□□□□ -0.63
CCDC88B-209ENST00000494080 C19orf73Q9NVV2 129 aa11.1□□□□□ -0.63
CCDC88B-209ENST00000494080 LY6G6CO95867 125 aa11.1□□□□□ -0.63
CCDC88B-209ENST00000494080 SMIM29Q86T20 159 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms