RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LINC01561Q8N1V8 128 aa8.21□□□□□ -1.09
HDAC6-230ENST00000488543 DNAH7Q8WXX0 4024 aa8.21□□□□□ -1.1
HDAC6-230ENST00000488543 BAALC-AS2P0C853 105 aa8.21□□□□□ -1.1
HDAC6-230ENST00000488543 C9orf129Q5T035 196 aaKnown RBP8.21□□□□□ -1.1
HDAC6-230ENST00000488543 CD164L2Q6UWJ8 174 aa8.21□□□□□ -1.1
HDAC6-230ENST00000488543 SND1-IT1Q9HBX3 110 aa8.21□□□□□ -1.1
HDAC6-230ENST00000488543 KLK12Q9UKR0 248 aa8.21□□□□□ -1.1
HDAC6-230ENST00000488543 IGLV10-54A0A075B6I4 117 aa8.2□□□□□ -1.1
HDAC6-230ENST00000488543 ENHOQ6UWT2 76 aa8.2□□□□□ -1.1
HDAC6-230ENST00000488543 A0A087WYN8 130 aa8.2□□□□□ -1.1
HDAC6-230ENST00000488543 CRPP02741 224 aa8.2□□□□□ -1.1
HDAC6-230ENST00000488543 USP17L23D6RBM5 183 aa8.19□□□□□ -1.1
HDAC6-230ENST00000488543 CCL18P55774 89 aa8.19□□□□□ -1.1
HDAC6-230ENST00000488543 STARD9Q9P2P6 4700 aa8.19□□□□□ -1.1
HDAC6-230ENST00000488543 VPREB1P12018 145 aa8.19□□□□□ -1.1
HDAC6-230ENST00000488543 SMIM11BQ8TCY0 68 aa8.19□□□□□ -1.1
HDAC6-230ENST00000488543 PLECQ15149 4684 aaKnown RBP8.17□□□□□ -1.1
HDAC6-230ENST00000488543 SLPIP03973 132 aa8.17□□□□□ -1.1
HDAC6-230ENST00000488543 PRR3P79522 188 aaKnown RBP8.17□□□□□ -1.1
HDAC6-230ENST00000488543 Q8IZM0 81 aa8.17□□□□□ -1.1
HDAC6-230ENST00000488543 LINC00588Q9Y4M8 146 aa8.17□□□□□ -1.1
HDAC6-230ENST00000488543 KIAA0087Q14695 138 aa8.16□□□□□ -1.1
HDAC6-230ENST00000488543 OR13C6PQ8NH95 151 aa8.16□□□□□ -1.1
HDAC6-230ENST00000488543 GAGE2AQ6NT46 116 aa8.15□□□□□ -1.1
HDAC6-230ENST00000488543 DYNC2H1Q8NCM8 4307 aaKnown RBP8.15□□□□□ -1.1
HDAC6-230ENST00000488543 LINC01556Q5JQF7 62 aa8.15□□□□□ -1.1
HDAC6-230ENST00000488543 COPS9Q8WXC6 57 aa8.15□□□□□ -1.1
HDAC6-230ENST00000488543 TRACP01848 142 aa8.14□□□□□ -1.11
HDAC6-230ENST00000488543 KRTAP26-1Q6PEX3 210 aa8.14□□□□□ -1.11
HDAC6-230ENST00000488543 FAM240AA0A1B0GVK7 77 aa8.14□□□□□ -1.11
HDAC6-230ENST00000488543 TRAV13-2A0A0B4J235 113 aa8.13□□□□□ -1.11
HDAC6-230ENST00000488543 RPL28P46779 137 aaKnown RBP8.13□□□□□ -1.11
HDAC6-230ENST00000488543 APLNQ9ULZ1 77 aa8.13□□□□□ -1.11
HDAC6-230ENST00000488543 LECT2O14960 151 aa8.13□□□□□ -1.11
HDAC6-230ENST00000488543 C14orf132Q9NPU4 83 aa8.13□□□□□ -1.11
HDAC6-230ENST00000488543 FAM236AA0A1B0GUQ0 79 aa8.12□□□□□ -1.11
HDAC6-230ENST00000488543 FAM236BA0A1B0GV22 79 aa8.12□□□□□ -1.11
HDAC6-230ENST00000488543 IBA57-AS1B1ANH7 110 aa8.12□□□□□ -1.11
HDAC6-230ENST00000488543 DNAH10OSP0CZ25 163 aa8.12□□□□□ -1.11
HDAC6-230ENST00000488543 C9orf116Q5BN46 136 aaPredicted RBP8.12□□□□□ -1.11
HDAC6-230ENST00000488543 Q6Q795 121 aa8.12□□□□□ -1.11
HDAC6-230ENST00000488543 TNP2Q05952 138 aa8.12□□□□□ -1.11
HDAC6-230ENST00000488543 PPDPFQ9H3Y8 114 aa8.12□□□□□ -1.11
HDAC6-230ENST00000488543 KLK5Q9Y337 293 aaPredicted RBP8.12□□□□□ -1.11
HDAC6-230ENST00000488543 V9GYY9 64 aa8.12□□□□□ -1.11
HDAC6-230ENST00000488543 NCR3O14931 201 aa8.11□□□□□ -1.11
HDAC6-230ENST00000488543 LINC00526Q96FQ7 95 aa8.11□□□□□ -1.11
HDAC6-230ENST00000488543 DNAL4O96015 105 aa8.1□□□□□ -1.11
HDAC6-230ENST00000488543 TRBV7-7A0A0K0K1E9 115 aa8.09□□□□□ -1.11
HDAC6-230ENST00000488543 NUPR2A6NF83 97 aa8.09□□□□□ -1.11
HDAC6-230ENST00000488543 CXCL5P42830 114 aa8.09□□□□□ -1.11
HDAC6-230ENST00000488543 SPAG11BQ08648 103 aa8.09□□□□□ -1.11
HDAC6-230ENST00000488543 DNAH1Q9P2D7 4330 aa8.09□□□□□ -1.11
HDAC6-230ENST00000488543 C6orf223Q8N319 242 aa8.09□□□□□ -1.11
HDAC6-230ENST00000488543 Q8NDZ9 215 aa8.08□□□□□ -1.12
HDAC6-230ENST00000488543 C10orf25Q5T742 122 aa8.07□□□□□ -1.12
HDAC6-230ENST00000488543 UPK3BQ9BT76 320 aa8.07□□□□□ -1.12
HDAC6-230ENST00000488543 UNQ6190/PRO20217Q6UXQ8 127 aa8.06□□□□□ -1.12
HDAC6-230ENST00000488543 SDIM1Q6ZPB5 146 aa8.06□□□□□ -1.12
HDAC6-230ENST00000488543 IGKV3D-7A0A0C4DH55 119 aa8.06□□□□□ -1.12
HDAC6-230ENST00000488543 SMIM20Q8N5G0 67 aa8.06□□□□□ -1.12
HDAC6-230ENST00000488543 ACYP1P07311 99 aa8.05□□□□□ -1.12
HDAC6-230ENST00000488543 LINC00643Q86TS7 51 aa8.05□□□□□ -1.12
HDAC6-230ENST00000488543 UBE2DNLQ8IWF7 75 aa8.05□□□□□ -1.12
HDAC6-230ENST00000488543 C15orf56Q8N910 161 aa8.05□□□□□ -1.12
HDAC6-230ENST00000488543 MUC7Q8TAX7 377 aa8.05□□□□□ -1.12
HDAC6-230ENST00000488543 IGKV2D-24A0A075B6R9 120 aa8.04□□□□□ -1.12
HDAC6-230ENST00000488543 INAFM2P0DMQ5 153 aa8.04□□□□□ -1.12
HDAC6-230ENST00000488543 COX17Q14061 63 aa8.04□□□□□ -1.12
HDAC6-230ENST00000488543 KRTAP1-5Q9BYS1 174 aa8.04□□□□□ -1.12
HDAC6-230ENST00000488543 LINC00846Q9NV44 126 aa8.04□□□□□ -1.12
HDAC6-230ENST00000488543 HIGD2BQ4VC39 106 aa8.03□□□□□ -1.12
HDAC6-230ENST00000488543 KMT2AQ03164 3969 aa8.03□□□□□ -1.12
HDAC6-230ENST00000488543 H3BS24 57 aa8.03□□□□□ -1.12
HDAC6-230ENST00000488543 DNAH10Q8IVF4 4471 aa8.02□□□□□ -1.12
HDAC6-230ENST00000488543 A0A087WVE0 104 aa8.02□□□□□ -1.13
HDAC6-230ENST00000488543 GVQW2A0A096LPI5 108 aaPredicted RBP8.02□□□□□ -1.13
HDAC6-230ENST00000488543 WWC2-AS2Q96NR7 200 aa8.02□□□□□ -1.13
HDAC6-230ENST00000488543 H0YGX0 51 aa8.02□□□□□ -1.13
HDAC6-230ENST00000488543 C6orf48Q9UBA6 75 aa8.02□□□□□ -1.13
HDAC6-230ENST00000488543 A0A0A0MQY5 61 aa8.01□□□□□ -1.13
HDAC6-230ENST00000488543 VPS13DQ5THJ4 4388 aa8□□□□□ -1.13
HDAC6-230ENST00000488543 CASC10Q5T4H9 136 aa8□□□□□ -1.13
HDAC6-230ENST00000488543 C2orf48Q96LS8 159 aa7.99□□□□□ -1.13
HDAC6-230ENST00000488543 ORMDL1Q9P0S3 153 aa7.99□□□□□ -1.13
HDAC6-230ENST00000488543 C6orf99Q4VX62 202 aa7.98□□□□□ -1.13
HDAC6-230ENST00000488543 Q6ZRU5 148 aa7.98□□□□□ -1.13
HDAC6-230ENST00000488543 OBSCN-AS1Q96MR7 158 aa7.98□□□□□ -1.13
HDAC6-230ENST00000488543 CAMK2N2Q96S95 79 aa7.98□□□□□ -1.13
HDAC6-230ENST00000488543 M0R2N4 97 aa7.97□□□□□ -1.13
HDAC6-230ENST00000488543 Q8N814 137 aa7.97□□□□□ -1.13
HDAC6-230ENST00000488543 IMUPQ9GZP8 106 aa7.97□□□□□ -1.13
HDAC6-230ENST00000488543 NDUFC2O95298 119 aa7.96□□□□□ -1.13
HDAC6-230ENST00000488543 C9orf153Q5TBE3 101 aa7.96□□□□□ -1.14
HDAC6-230ENST00000488543 LINC00528Q8N1L1 170 aa7.96□□□□□ -1.14
HDAC6-230ENST00000488543 RMI2Q96E14 147 aa7.95□□□□□ -1.14
HDAC6-230ENST00000488543 CYSTM1Q9H1C7 97 aa7.95□□□□□ -1.14
HDAC6-230ENST00000488543 RPL18AQ02543 176 aaKnown RBP7.95□□□□□ -1.14
HDAC6-230ENST00000488543 LINC00336Q6ZUF6 198 aa7.95□□□□□ -1.14
HDAC6-230ENST00000488543 S100A7L2Q5SY68 101 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms