RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 LIMD2Q9BT23 127 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 EFCAB11Q9BUY7 163 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 SMIM2Q9BVW6 85 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 NPCDR1Q9BY65 106 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 DPY30Q9C005 99 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 MAP1LC3BQ9GZQ8 125 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 FXYD6Q9H0Q3 95 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 PRO1933Q9H354 126 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 TCEAL2Q9H3H9 227 aaPredicted RBP-0.08□□□□□ -2.42
SMC4-219ENST00000487747 TP53AIP1Q9HCN2 124 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 NXT2Q9NPJ8 142 aaKnown RBP-0.08□□□□□ -2.42
SMC4-219ENST00000487747 MRPL40Q9NQ50 206 aaKnown RBP-0.08□□□□□ -2.42
SMC4-219ENST00000487747 MANBALQ9NQG1 85 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 SMCO4Q9NRQ5 59 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 CTNNBIP1Q9NSA3 81 aaPredicted RBP-0.08□□□□□ -2.42
SMC4-219ENST00000487747 C14orf105Q9NVL8 296 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 GID8Q9NWU2 228 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 CCDC167Q9P0B6 97 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 LINC00474Q9P2X8 69 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 COMMD3Q9UBI1 195 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 CDKN2A-AS1Q9UH64 79 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 PRO0255Q9UI72 69 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 SSR3Q9UNL2 185 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 HIGD1AQ9Y241 93 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 ARL2BPQ9Y2Y0 163 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 TPRKBQ9Y3C4 175 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 MED31Q9Y3C7 131 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 HSPB11Q9Y547 144 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 ARL5AQ9Y689 179 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 SERP1Q9Y6X1 66 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 R4GMQ9 66 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 S4R3F8 94 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 MED13LQ71F56 2210 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 LAMA3Q16787 3333 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 TJP1Q07157 1748 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 ITSN1Q15811 1721 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 UBR1Q8IWV7 1749 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 DDX60Q8IY21 1712 aaKnown RBP-0.08□□□□□ -2.42
SMC4-219ENST00000487747 NALCNQ8IZF0 1738 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 ARHGEF28Q8N1W1 1705 aaKnown RBP-0.08□□□□□ -2.42
SMC4-219ENST00000487747 MYO5CQ9NQX4 1742 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 NWD2Q9ULI1 1742 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 ANKRD26Q9UPS8 1709 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 OBSL1O75147 1896 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 TANC1Q9C0D5 1861 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 MUC4Q99102 2169 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 APC2O95996 2303 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 CELSR2Q9HCU4 2923 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 ABCA13Q86UQ4 5058 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 MYO15AQ9UKN7 3530 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 RYR3Q15413 4870 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 MYOM1P52179 1685 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 SHPRHQ149N8 1683 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 SONP18583 2426 aaKnown RBP-0.08□□□□□ -2.42
SMC4-219ENST00000487747 HIVEP3Q5T1R4 2406 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 HRNRQ86YZ3 2850 aaPredicted RBP-0.08□□□□□ -2.42
SMC4-219ENST00000487747 CELSR3Q9NYQ7 3312 aa-0.08□□□□□ -2.42
SMC4-219ENST00000487747 ZFHX4Q86UP3 3567 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 DNAJC13O75165 2243 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 CADP27708 2225 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 USF3Q68DE3 2245 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 ASXL3Q9C0F0 2248 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 A0A1B0GUL6 1792 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 LOC285556D6RIA3 1793 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 MUC22E2RYF6 1773 aaPredicted RBP-0.09□□□□□ -2.42
SMC4-219ENST00000487747 UBR2Q8IWV8 1755 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 KIDINS220Q9ULH0 1771 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 DNAH3Q8TD57 4116 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 ANK2Q01484 3957 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 NBPF19A0A087WUL8 3843 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 SPENQ96T58 3664 aaKnown RBP-0.09□□□□□ -2.42
SMC4-219ENST00000487747 COL7A1Q02388 2944 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 PCNX1Q96RV3 2341 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 PLXNA2O75051 1894 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 PLXNA1Q9UIW2 1896 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 BPTFQ12830 3046 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 RICTORQ6R327 1708 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 LRRIQ1Q96JM4 1722 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 STAB2Q8WWQ8 2551 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 EP300Q09472 2414 aaPredicted RBP-0.09□□□□□ -2.42
SMC4-219ENST00000487747 RYR2Q92736 4967 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 A0A096LNI7 61 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 TRGV1A0A0A0MS02 117 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 TRAV21A0A0B4J279 112 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 A0A1B0GUT8 65 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 A0A1B0GV90 55 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 NUPR2A6NF83 97 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 ARL5CA6NH57 179 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 CEBPZOSA8MTT3 80 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 HIGD1CA8MV81 97 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 FAM25AB3EWG3 89 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 FAM25CB3EWG5 89 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 FAM25GB3EWG6 89 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 E5RI56 91 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 ATP6V1G2-DDX39BF2Z307 99 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 K7EP34 96 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 M0R143 59 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 UQCR11O14957 56 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 CETN3O15182 167 aa-0.09□□□□□ -2.42
SMC4-219ENST00000487747 ARPC5O15511 151 aa-0.09□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms