RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SMIM2Q9BVW6 85 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 PRO0255Q9UI72 69 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 HHLA3Q9XRX5 114 aa2.34□□□□□ -2.03
PTCD3-216ENST00000487043 DNHD1Q96M86 4753 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 ANK2Q01484 3957 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 IGHV1-24A0A0C4DH33 117 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 LRCOL1A6NCL2 159 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 LINC01549A6NIU2 74 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 HBDP02042 147 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 P0DMU3 169 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 FAM231AP0DMU4 169 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 FAM231CP0DMU5 169 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 CRYBA4P53673 196 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 UBE2D3P61077 147 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 UBE2D2P62837 147 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 DAZ4Q86SG3 579 aaKnown RBP2.33□□□□□ -2.04
PTCD3-216ENST00000487043 CYSLTR1Q9Y271 337 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 TENM3Q9P273 2699 aa2.33□□□□□ -2.04
PTCD3-216ENST00000487043 A0A1W2PPM0 123 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 F5H768 121 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 H3BNG1 76 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 H3BUT2 72 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 LINC00694P0DN24 101 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 TCTAP57738 103 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 LINC01545Q5VT33 79 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 LGALS9CQ6DKI2 356 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 ATOH7Q8N100 152 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 TOMM6Q96B49 74 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 SPANXDQ9BXN6 97 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 GTSF1LQ9H1H1 148 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 HIGD1BQ9P298 99 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 SPCS1Q9Y6A9 102 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 CMYA5Q8N3K9 4069 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 MEGF8Q7Z7M0 2845 aa2.32□□□□□ -2.04
PTCD3-216ENST00000487043 DEFB131BA0A096LNP1 70 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 A0A096LPF7 62 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 TRBV6-8A0A0A6YYG3 113 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 TRAV10A0A0B4J240 114 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 A0A0J9YY99 117 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 IGIPA6NJ69 53 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 A8MUU9 505 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 TMEM262E9PQX1 116 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.31□□□□□ -2.04
PTCD3-216ENST00000487043 HTN3P15516 51 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 ATP6V0E2Q8NHE4 81 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 DEFB104AQ8WTQ1 72 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 IFI27L1Q96BM0 104 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 TMEM141Q96I45 108 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 SCGB3A1Q96QR1 104 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 SPANXCQ9NY87 97 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 PRO0461Q9UI25 63 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 DNAH9Q9NYC9 4486 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 DNAH3Q8TD57 4116 aa2.31□□□□□ -2.04
PTCD3-216ENST00000487043 COL7A1Q02388 2944 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 TRBV25-1A0A075B6N4 114 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 TRAV12-1A0A0B4J245 112 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 C16orf90A8MZG2 172 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 C8orf87E5RJ46 101 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 IGLV7-43P04211 117 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 RPL39P62891 51 aaKnown RBP2.3□□□□□ -2.04
PTCD3-216ENST00000487043 SMAGPQ0VAQ4 97 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 LYRM7Q5U5X0 104 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 LYPD5Q6UWN5 251 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 TIMM21Q9BVV7 248 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 UBE2D4Q9Y2X8 147 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 ICOSQ9Y6W8 199 aa2.3□□□□□ -2.04
PTCD3-216ENST00000487043 HUWE1Q7Z6Z7 4374 aaKnown RBP2.3□□□□□ -2.04
PTCD3-216ENST00000487043 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.29□□□□□ -2.04
PTCD3-216ENST00000487043 A0A087WX48 190 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 IGKV2-29A2NJV5 120 aaPredicted RBP2.29□□□□□ -2.04
PTCD3-216ENST00000487043 H3BMG7 143 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 UBE2L6O14933 153 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 FGF6P10767 208 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 MRPS36P82909 103 aaKnown RBP2.29□□□□□ -2.04
PTCD3-216ENST00000487043 LELP1Q5T871 98 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 C2orf91Q6ZV80 131 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 C15orf53Q8NAA6 179 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 RAB37Q96AX2 223 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 RMI2Q96E14 147 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 AMELXQ99217 191 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 CDC42SE2Q9NRR3 84 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 STAB2Q8WWQ8 2551 aa2.29□□□□□ -2.04
PTCD3-216ENST00000487043 F8VRH5 84 aa2.28□□□□□ -2.04
PTCD3-216ENST00000487043 SPINK8P0C7L1 97 aa2.28□□□□□ -2.04
PTCD3-216ENST00000487043 ESRGQ1W209 222 aa2.28□□□□□ -2.04
PTCD3-216ENST00000487043 ZFAND6Q6FIF0 208 aa2.28□□□□□ -2.04
PTCD3-216ENST00000487043 FAM19A3Q7Z5A8 133 aa2.28□□□□□ -2.04
PTCD3-216ENST00000487043 SPANXB1Q9NS25 103 aaPredicted RBP2.28□□□□□ -2.04
PTCD3-216ENST00000487043 MRPL35Q9NZE8 188 aaKnown RBP2.28□□□□□ -2.04
PTCD3-216ENST00000487043 ERG28Q9UKR5 140 aa2.28□□□□□ -2.04
PTCD3-216ENST00000487043 TRBV20-1A0A075B6N2 111 aa2.27□□□□□ -2.05
PTCD3-216ENST00000487043 NUPR2A6NF83 97 aa2.27□□□□□ -2.05
PTCD3-216ENST00000487043 IGLL5B9A064 214 aa2.27□□□□□ -2.05
PTCD3-216ENST00000487043 K7ERS5 55 aa2.27□□□□□ -2.05
PTCD3-216ENST00000487043 DPM2O94777 84 aa2.27□□□□□ -2.05
PTCD3-216ENST00000487043 APOMO95445 188 aa2.27□□□□□ -2.05
PTCD3-216ENST00000487043 IGKCP01834 107 aa2.27□□□□□ -2.05
PTCD3-216ENST00000487043 PLNP26678 52 aa2.27□□□□□ -2.05
PTCD3-216ENST00000487043 UBE2D1P51668 147 aa2.27□□□□□ -2.05
PTCD3-216ENST00000487043 CCL18P55774 89 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms