RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 DNAH11Q96DT5 4516 aa4.34□□□□□ -1.72
USP48-208ENST00000479177 F8WDY8 70 aa4.33□□□□□ -1.72
USP48-208ENST00000479177 TIMM17BO60830 172 aa4.33□□□□□ -1.72
USP48-208ENST00000479177 C14orf177Q52M58 125 aa4.33□□□□□ -1.72
USP48-208ENST00000479177 UNQ6190/PRO20217Q6UXQ8 127 aa4.33□□□□□ -1.72
USP48-208ENST00000479177 Q6ZRU5 148 aa4.33□□□□□ -1.72
USP48-208ENST00000479177 CAMK2N2Q96S95 79 aa4.33□□□□□ -1.72
USP48-208ENST00000479177 C6orf48Q9UBA6 75 aa4.33□□□□□ -1.72
USP48-208ENST00000479177 A0A087WTM6 91 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 TRBV30A0A0K0K1B3 111 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 PCP4L1A6NKN8 68 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 TMEM238C9JI98 176 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 RTL8CO15255 209 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 SMIM13P0DJ93 91 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 SYCNQ0VAF6 134 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 MEIG1Q5JSS6 88 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 CARD19Q96LW7 228 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 SPANXB1Q9NS25 103 aaPredicted RBP4.32□□□□□ -1.72
USP48-208ENST00000479177 ERG28Q9UKR5 140 aa4.32□□□□□ -1.72
USP48-208ENST00000479177 CNBPP62633 177 aaKnown RBP4.31□□□□□ -1.72
USP48-208ENST00000479177 CTAG1AP78358 180 aa4.31□□□□□ -1.72
USP48-208ENST00000479177 HSD52Q0P140 79 aa4.31□□□□□ -1.72
USP48-208ENST00000479177 C9orf116Q5BN46 136 aaPredicted RBP4.31□□□□□ -1.72
USP48-208ENST00000479177 ADAMTSL4-AS1Q5T5F5 129 aa4.31□□□□□ -1.72
USP48-208ENST00000479177 SPANXDQ9BXN6 97 aa4.31□□□□□ -1.72
USP48-208ENST00000479177 SPANXCQ9NY87 97 aa4.31□□□□□ -1.72
USP48-208ENST00000479177 A0A0U1RRA0 63 aa4.3□□□□□ -1.72
USP48-208ENST00000479177 LINC00587B1AMM8 73 aa4.3□□□□□ -1.72
USP48-208ENST00000479177 PFN2P35080 140 aa4.3□□□□□ -1.72
USP48-208ENST00000479177 LINC00158P58513 81 aa4.3□□□□□ -1.72
USP48-208ENST00000479177 CIRBPQ14011 172 aaKnown RBP4.3□□□□□ -1.72
USP48-208ENST00000479177 COX17Q14061 63 aa4.3□□□□□ -1.72
USP48-208ENST00000479177 TAL2Q16559 108 aa4.3□□□□□ -1.72
USP48-208ENST00000479177 Q8N814 137 aa4.3□□□□□ -1.72
USP48-208ENST00000479177 DAND5Q8N907 189 aa4.3□□□□□ -1.72
USP48-208ENST00000479177 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.29□□□□□ -1.72
USP48-208ENST00000479177 SRSF9Q13242 221 aaKnown RBP eCLIP4.29□□□□□ -1.72
USP48-208ENST00000479177 SOSTDC1Q6X4U4 206 aa4.29□□□□□ -1.72
USP48-208ENST00000479177 Q6ZVH6 145 aa4.29□□□□□ -1.72
USP48-208ENST00000479177 MIR7-3HGQ8N6C7 128 aa4.29□□□□□ -1.72
USP48-208ENST00000479177 HIST1H4GQ99525 98 aa4.29□□□□□ -1.72
USP48-208ENST00000479177 PKD1P98161 4303 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 DNAH5Q8TE73 4624 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.28□□□□□ -1.72
USP48-208ENST00000479177 NDUFC2-KCTD14E9PQ53 114 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 M0R143 59 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 TLX1NBP0CAT3 122 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 IFITM1P13164 125 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 FXYD2P54710 66 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 BVES-AS1Q5T3Y7 98 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 CEND1Q8N111 149 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 LINC00308Q8TCZ7 52 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 KRTAP2-2Q9BYT5 123 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 PPDPFQ9H3Y8 114 aa4.28□□□□□ -1.72
USP48-208ENST00000479177 RYR3Q15413 4870 aa4.27□□□□□ -1.73
USP48-208ENST00000479177 LOC107984640A0A0U1RRK4 108 aa4.27□□□□□ -1.73
USP48-208ENST00000479177 HINT1P49773 126 aaPredicted RBP4.27□□□□□ -1.73
USP48-208ENST00000479177 NPC2P61916 151 aa4.27□□□□□ -1.73
USP48-208ENST00000479177 Q6ZRP5 223 aa4.27□□□□□ -1.73
USP48-208ENST00000479177 MUSTN1Q8IVN3 82 aa4.27□□□□□ -1.73
USP48-208ENST00000479177 MPLKIPQ8TAP9 179 aa4.27□□□□□ -1.73
USP48-208ENST00000479177 SND1-IT1Q9HBX3 110 aa4.27□□□□□ -1.73
USP48-208ENST00000479177 LOC107984156A0A0G2JMH3 177 aa4.26□□□□□ -1.73
USP48-208ENST00000479177 RPL24P83731 157 aaKnown RBP4.26□□□□□ -1.73
USP48-208ENST00000479177 RPL18AQ02543 176 aaKnown RBP4.26□□□□□ -1.73
USP48-208ENST00000479177 LINC00336Q6ZUF6 198 aa4.26□□□□□ -1.73
USP48-208ENST00000479177 ARL17AQ8IVW1 177 aa4.26□□□□□ -1.73
USP48-208ENST00000479177 C9orf163Q8N9P6 203 aa4.26□□□□□ -1.73
USP48-208ENST00000479177 COPS9Q8WXC6 57 aa4.26□□□□□ -1.73
USP48-208ENST00000479177 SNHG12Q9BXW3 62 aa4.26□□□□□ -1.73
USP48-208ENST00000479177 PKHD1P08F94 4074 aa4.26□□□□□ -1.73
USP48-208ENST00000479177 DYNC1H1Q14204 4646 aaKnown RBP4.25□□□□□ -1.73
USP48-208ENST00000479177 A0A096LNI7 61 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 A0A1B0GWB2 263 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 A4D1N5 150 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 BATFQ16520 125 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 GAGE2EQ4V326 116 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 C9orf129Q5T035 196 aaKnown RBP4.25□□□□□ -1.73
USP48-208ENST00000479177 Q8NDZ9 215 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 XAGE1AQ9HD64 81 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 GAGE2DQ9UEU5 116 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 PKIGQ9Y2B9 76 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 DNAH8Q96JB1 4490 aa4.25□□□□□ -1.73
USP48-208ENST00000479177 IGLV5-52A0A0A0MRZ9 124 aa4.24□□□□□ -1.73
USP48-208ENST00000479177 C16orf90A8MZG2 172 aa4.24□□□□□ -1.73
USP48-208ENST00000479177 K7ERJ3 54 aa4.24□□□□□ -1.73
USP48-208ENST00000479177 FUSP35637 526 aaKnown RBP eCLIP4.24□□□□□ -1.73
USP48-208ENST00000479177 GAGE2BQ13066 116 aa4.24□□□□□ -1.73
USP48-208ENST00000479177 LINC01620Q4KN68 170 aa4.24□□□□□ -1.73
USP48-208ENST00000479177 SDIM1Q6ZPB5 146 aa4.24□□□□□ -1.73
USP48-208ENST00000479177 NHP2Q9NX24 153 aaKnown RBP4.24□□□□□ -1.73
USP48-208ENST00000479177 IGKV2-28A0A075B6P5 120 aa4.23□□□□□ -1.73
USP48-208ENST00000479177 A0A0B4J2C4 111 aa4.23□□□□□ -1.73
USP48-208ENST00000479177 A6NDN8 102 aa4.23□□□□□ -1.73
USP48-208ENST00000479177 NDUFC2O95298 119 aa4.23□□□□□ -1.73
USP48-208ENST00000479177 IGKV2D-28P01615 120 aa4.23□□□□□ -1.73
USP48-208ENST00000479177 CFC1BP0CG36 223 aa4.23□□□□□ -1.73
USP48-208ENST00000479177 CFC1P0CG37 223 aa4.23□□□□□ -1.73
USP48-208ENST00000479177 VPREB1P12018 145 aa4.23□□□□□ -1.73
USP48-208ENST00000479177 IGLV5-37A0A075B6J1 123 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms