RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 IGKV2D-28P01615 120 aa12.93□□□□□ -0.34
COL9A3-211ENST00000477612 LINC00158P58513 81 aa12.93□□□□□ -0.34
COL9A3-211ENST00000477612 HERV-K104P63124 156 aa12.91□□□□□ -0.34
COL9A3-211ENST00000477612 TMEM126AQ9H061 195 aa12.9□□□□□ -0.34
COL9A3-211ENST00000477612 HSPB8Q9UJY1 196 aa12.9□□□□□ -0.34
COL9A3-211ENST00000477612 UBE2AP49459 152 aa12.89□□□□□ -0.35
COL9A3-211ENST00000477612 LINC00587B1AMM8 73 aa12.88□□□□□ -0.35
COL9A3-211ENST00000477612 H0Y8G0 127 aa12.88□□□□□ -0.35
COL9A3-211ENST00000477612 SMIM13P0DJ93 91 aa12.88□□□□□ -0.35
COL9A3-211ENST00000477612 NDUFA12Q9UI09 145 aa12.88□□□□□ -0.35
COL9A3-211ENST00000477612 A0A0U1RRA0 63 aa12.87□□□□□ -0.35
COL9A3-211ENST00000477612 M0R378 163 aa12.87□□□□□ -0.35
COL9A3-211ENST00000477612 PLNP26678 52 aa12.87□□□□□ -0.35
COL9A3-211ENST00000477612 A0A087X002 238 aa12.86□□□□□ -0.35
COL9A3-211ENST00000477612 MYMXA0A1B0GTQ4 84 aa12.86□□□□□ -0.35
COL9A3-211ENST00000477612 TMEM238C9JI98 176 aa12.86□□□□□ -0.35
COL9A3-211ENST00000477612 MEIG1Q5JSS6 88 aa12.86□□□□□ -0.35
COL9A3-211ENST00000477612 LEPROTO15243 131 aa12.85□□□□□ -0.35
COL9A3-211ENST00000477612 CRYGAP11844 174 aa12.85□□□□□ -0.35
COL9A3-211ENST00000477612 FABP4P15090 132 aa12.85□□□□□ -0.35
COL9A3-211ENST00000477612 LPAP08519 4548 aa12.84□□□□□ -0.35
COL9A3-211ENST00000477612 FAM19A1Q7Z5A9 133 aa12.84□□□□□ -0.35
COL9A3-211ENST00000477612 MIR7-3HGQ8N6C7 128 aa12.84□□□□□ -0.35
COL9A3-211ENST00000477612 ATP6V1G1O75348 118 aa12.83□□□□□ -0.36
COL9A3-211ENST00000477612 DPM2O94777 84 aa12.83□□□□□ -0.36
COL9A3-211ENST00000477612 TSPEAR-AS2P59090 65 aa12.83□□□□□ -0.36
COL9A3-211ENST00000477612 PRLHP81277 87 aa12.83□□□□□ -0.36
COL9A3-211ENST00000477612 PLEKHB2Q96CS7 222 aa12.83□□□□□ -0.36
COL9A3-211ENST00000477612 FAM229BQ4G0N7 80 aa12.82□□□□□ -0.36
COL9A3-211ENST00000477612 IGKV2D-26A0A0A0MRZ7 120 aa12.81□□□□□ -0.36
COL9A3-211ENST00000477612 LOC107984156A0A0G2JMH3 177 aa12.81□□□□□ -0.36
COL9A3-211ENST00000477612 IGKCP01834 107 aa12.81□□□□□ -0.36
COL9A3-211ENST00000477612 ARL17AQ8IVW1 177 aa12.81□□□□□ -0.36
COL9A3-211ENST00000477612 BOD1L2Q8IYS8 172 aa12.81□□□□□ -0.36
COL9A3-211ENST00000477612 MAP1LC3CQ9BXW4 147 aa12.81□□□□□ -0.36
COL9A3-211ENST00000477612 J3QQQ9 107 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST1H2BKO60814 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST1H2BJP06899 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST1H2BOP23527 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST1H2BBP33778 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST1H2BDP58876 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST1H2BCP62807 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST2H2BEQ16778 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.8□□□□□ -0.36
COL9A3-211ENST00000477612 TYMSOSQ8TAI1 123 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST1H2BHQ93079 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST1H2BNQ99877 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HIST1H2BMQ99879 126 aa12.8□□□□□ -0.36
COL9A3-211ENST00000477612 HERVK_113P61574 105 aa12.79□□□□□ -0.36
COL9A3-211ENST00000477612 ANAPC11Q9NYG5 84 aa12.79□□□□□ -0.36
COL9A3-211ENST00000477612 NMUP48645 174 aa12.78□□□□□ -0.36
COL9A3-211ENST00000477612 KRTAP13-2Q52LG2 175 aa12.78□□□□□ -0.36
COL9A3-211ENST00000477612 PMCHL2Q9BQD1 86 aa12.78□□□□□ -0.36
COL9A3-211ENST00000477612 PRYO14603 147 aa12.76□□□□□ -0.37
COL9A3-211ENST00000477612 SPRR1AP35321 89 aa12.76□□□□□ -0.37
COL9A3-211ENST00000477612 KCNQ1DNQ9H478 68 aa12.76□□□□□ -0.37
COL9A3-211ENST00000477612 RNF213Q63HN8 5207 aa12.75□□□□□ -0.37
COL9A3-211ENST00000477612 LINC00337Q8N6G1 96 aa12.74□□□□□ -0.37
COL9A3-211ENST00000477612 KRTAP4-16G5E9R7 235 aaPredicted RBP12.73□□□□□ -0.37
COL9A3-211ENST00000477612 NCR3O14931 201 aa12.73□□□□□ -0.37
COL9A3-211ENST00000477612 LGALS3P17931 250 aaKnown RBP12.73□□□□□ -0.37
COL9A3-211ENST00000477612 E9PLD3 99 aa12.72□□□□□ -0.37
COL9A3-211ENST00000477612 SYS1-DBNDD2H3BUS1 97 aa12.72□□□□□ -0.37
COL9A3-211ENST00000477612 TRBV10-2A0A0K0K1G8 114 aa12.71□□□□□ -0.37
COL9A3-211ENST00000477612 DAND5Q8N907 189 aa12.71□□□□□ -0.37
COL9A3-211ENST00000477612 HIGD2AQ9BW72 106 aa12.7□□□□□ -0.38
COL9A3-211ENST00000477612 TRBV10-3A0A0K0K1G6 114 aa12.69□□□□□ -0.38
COL9A3-211ENST00000477612 TSPAN13O95857 204 aa12.68□□□□□ -0.38
COL9A3-211ENST00000477612 CTAG1AP78358 180 aa12.68□□□□□ -0.38
COL9A3-211ENST00000477612 LINC01545Q5VT33 79 aa12.68□□□□□ -0.38
COL9A3-211ENST00000477612 NDUFC2O95298 119 aa12.67□□□□□ -0.38
COL9A3-211ENST00000477612 PRR4Q16378 134 aa12.67□□□□□ -0.38
COL9A3-211ENST00000477612 COA6Q5JTJ3 125 aaKnown RBP12.67□□□□□ -0.38
COL9A3-211ENST00000477612 PET117Q6UWS5 81 aa12.67□□□□□ -0.38
COL9A3-211ENST00000477612 SPRR4Q96PI1 79 aa12.67□□□□□ -0.38
COL9A3-211ENST00000477612 A0A0J9YXY3 114 aa12.66□□□□□ -0.38
COL9A3-211ENST00000477612 LINC00304Q8N9R0 145 aa12.65□□□□□ -0.38
COL9A3-211ENST00000477612 MIEN1Q9BRT3 115 aa12.65□□□□□ -0.38
COL9A3-211ENST00000477612 S100A12P80511 92 aa12.64□□□□□ -0.39
COL9A3-211ENST00000477612 SPANXB1Q9NS25 103 aaPredicted RBP12.64□□□□□ -0.39
COL9A3-211ENST00000477612 ZNF706Q9Y5V0 76 aaPredicted RBP12.64□□□□□ -0.39
COL9A3-211ENST00000477612 ETDCA0A1B0GVM5 59 aa12.63□□□□□ -0.39
COL9A3-211ENST00000477612 DDTP30046 118 aa12.63□□□□□ -0.39
COL9A3-211ENST00000477612 ADAMTSL4-AS1Q5T5F5 129 aa12.63□□□□□ -0.39
COL9A3-211ENST00000477612 SOSTDC1Q6X4U4 206 aa12.62□□□□□ -0.39
COL9A3-211ENST00000477612 SMCR5Q8TEV8 140 aa12.62□□□□□ -0.39
COL9A3-211ENST00000477612 B5MCH6 92 aa12.61□□□□□ -0.39
COL9A3-211ENST00000477612 C3orf22Q8N5N4 141 aa12.61□□□□□ -0.39
COL9A3-211ENST00000477612 EIF4EBP3O60516 100 aaPredicted RBP12.6□□□□□ -0.39
COL9A3-211ENST00000477612 IGLV6-57P01721 117 aa12.6□□□□□ -0.39
COL9A3-211ENST00000477612 C3orf79P0CE67 100 aa12.6□□□□□ -0.39
COL9A3-211ENST00000477612 LITAFQ99732 161 aa12.59□□□□□ -0.39
COL9A3-211ENST00000477612 TIMM17BO60830 172 aa12.58□□□□□ -0.4
COL9A3-211ENST00000477612 LINC00483Q53H64 154 aa12.56□□□□□ -0.4
COL9A3-211ENST00000477612 S100A7L2Q5SY68 101 aa12.56□□□□□ -0.4
COL9A3-211ENST00000477612 SPAG11AQ6PDA7 123 aa12.55□□□□□ -0.4
COL9A3-211ENST00000477612 Q6ZRX8 168 aa12.55□□□□□ -0.4
COL9A3-211ENST00000477612 S100A1P23297 94 aa12.54□□□□□ -0.4
COL9A3-211ENST00000477612 NPC2P61916 151 aa12.54□□□□□ -0.4
COL9A3-211ENST00000477612 Q9BRP9 147 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms