RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 LOC107984156A0A0G2JMH3 177 aa8.7□□□□□ -1.02
HMGN1-211ENST00000471260 HERVK_113P63121 156 aa8.7□□□□□ -1.02
HMGN1-211ENST00000471260 CFAP161Q6P656 301 aa8.7□□□□□ -1.02
HMGN1-211ENST00000471260 ARL17AQ8IVW1 177 aa8.7□□□□□ -1.02
HMGN1-211ENST00000471260 FAM104AQ969W3 186 aa8.7□□□□□ -1.02
HMGN1-211ENST00000471260 A4D1N5 150 aa8.69□□□□□ -1.02
HMGN1-211ENST00000471260 KRTAP29-1A8MX34 341 aaPredicted RBP8.69□□□□□ -1.02
HMGN1-211ENST00000471260 C21orf62-AS1Q17RA5 79 aa8.69□□□□□ -1.02
HMGN1-211ENST00000471260 ETDBQ3ZM63 59 aa8.69□□□□□ -1.02
HMGN1-211ENST00000471260 SDIM1Q6ZPB5 146 aa8.69□□□□□ -1.02
HMGN1-211ENST00000471260 Q6ZUT4 128 aa8.69□□□□□ -1.02
HMGN1-211ENST00000471260 TEN1Q86WV5 123 aa8.69□□□□□ -1.02
HMGN1-211ENST00000471260 PPDPFLQ8WWR9 84 aa8.69□□□□□ -1.02
HMGN1-211ENST00000471260 OPRPNQ99935 248 aaPredicted RBP8.69□□□□□ -1.02
HMGN1-211ENST00000471260 GEMIN7Q9H840 131 aaKnown RBP8.69□□□□□ -1.02
HMGN1-211ENST00000471260 HERC1Q15751 4861 aa8.68□□□□□ -1.02
HMGN1-211ENST00000471260 J3QL48 77 aa8.68□□□□□ -1.02
HMGN1-211ENST00000471260 NDUFA1O15239 70 aa8.68□□□□□ -1.02
HMGN1-211ENST00000471260 LITAFQ99732 161 aa8.68□□□□□ -1.02
HMGN1-211ENST00000471260 NDUFA12Q9UI09 145 aa8.68□□□□□ -1.02
HMGN1-211ENST00000471260 ERG28Q9UKR5 140 aa8.68□□□□□ -1.02
HMGN1-211ENST00000471260 TRBV30A0A0K0K1B3 111 aa8.67□□□□□ -1.02
HMGN1-211ENST00000471260 PSMB2P49721 201 aa8.67□□□□□ -1.02
HMGN1-211ENST00000471260 KRTAP10-4P60372 401 aaPredicted RBP8.67□□□□□ -1.02
HMGN1-211ENST00000471260 IGHV3-64A0A075B6Q5 118 aa8.66□□□□□ -1.02
HMGN1-211ENST00000471260 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.66□□□□□ -1.02
HMGN1-211ENST00000471260 IGLV5-39A0A0G2JS06 123 aa8.66□□□□□ -1.02
HMGN1-211ENST00000471260 IGKV2-29A2NJV5 120 aaPredicted RBP8.66□□□□□ -1.02
HMGN1-211ENST00000471260 TCL1BO95988 128 aa8.66□□□□□ -1.02
HMGN1-211ENST00000471260 FOXI1Q12951 378 aa8.66□□□□□ -1.02
HMGN1-211ENST00000471260 CIRBPQ14011 172 aaKnown RBP8.66□□□□□ -1.02
HMGN1-211ENST00000471260 MUSTN1Q8IVN3 82 aa8.66□□□□□ -1.02
HMGN1-211ENST00000471260 TMEM101Q96IK0 257 aa8.66□□□□□ -1.02
HMGN1-211ENST00000471260 SIGMAR1Q99720 223 aa8.66□□□□□ -1.02
HMGN1-211ENST00000471260 GAGE12HA6NDE8 117 aa8.65□□□□□ -1.02
HMGN1-211ENST00000471260 ATXN8Q156A1 80 aa8.65□□□□□ -1.02
HMGN1-211ENST00000471260 CHCHD10Q8WYQ3 142 aaPredicted RBP8.65□□□□□ -1.02
HMGN1-211ENST00000471260 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.65□□□□□ -1.02
HMGN1-211ENST00000471260 IGKV3OR2-268A0A0C4DH90 116 aa8.64□□□□□ -1.03
HMGN1-211ENST00000471260 SCGB1C2P0DMR2 95 aa8.64□□□□□ -1.03
HMGN1-211ENST00000471260 SMCPP49901 116 aaPredicted RBP8.64□□□□□ -1.03
HMGN1-211ENST00000471260 RPL37AP61513 92 aaKnown RBP8.64□□□□□ -1.03
HMGN1-211ENST00000471260 C15orf56Q8N910 161 aa8.64□□□□□ -1.03
HMGN1-211ENST00000471260 OXTP01178 125 aa8.63□□□□□ -1.03
HMGN1-211ENST00000471260 SLPIP03973 132 aa8.63□□□□□ -1.03
HMGN1-211ENST00000471260 COX6CP09669 75 aa8.63□□□□□ -1.03
HMGN1-211ENST00000471260 HERV-K104P63124 156 aa8.63□□□□□ -1.03
HMGN1-211ENST00000471260 Q1RN00 199 aa8.62□□□□□ -1.03
HMGN1-211ENST00000471260 LINC00959A0A1B0GUT2 108 aa8.61□□□□□ -1.03
HMGN1-211ENST00000471260 H3BT86 120 aa8.61□□□□□ -1.03
HMGN1-211ENST00000471260 PANO1I0J062 215 aa8.61□□□□□ -1.03
HMGN1-211ENST00000471260 SLC25A20O43772 301 aa8.61□□□□□ -1.03
HMGN1-211ENST00000471260 SPINK8P0C7L1 97 aa8.61□□□□□ -1.03
HMGN1-211ENST00000471260 SFTA2Q6UW10 78 aa8.61□□□□□ -1.03
HMGN1-211ENST00000471260 CDC42SE2Q9NRR3 84 aa8.61□□□□□ -1.03
HMGN1-211ENST00000471260 GVQW2A0A096LPI5 108 aaPredicted RBP8.6□□□□□ -1.03
HMGN1-211ENST00000471260 EIF4EBP3O60516 100 aaPredicted RBP8.6□□□□□ -1.03
HMGN1-211ENST00000471260 SS18Q15532 418 aa8.6□□□□□ -1.03
HMGN1-211ENST00000471260 DPH3Q96FX2 82 aa8.6□□□□□ -1.03
HMGN1-211ENST00000471260 CDKN2A-AS1Q9UH64 79 aa8.6□□□□□ -1.03
HMGN1-211ENST00000471260 A0A087WYN8 130 aa8.59□□□□□ -1.03
HMGN1-211ENST00000471260 RPL13AP40429 203 aaKnown RBP8.59□□□□□ -1.03
HMGN1-211ENST00000471260 LINC00242Q5T6M2 205 aa8.59□□□□□ -1.03
HMGN1-211ENST00000471260 SPACA4Q8TDM5 124 aa8.59□□□□□ -1.03
HMGN1-211ENST00000471260 PKIGQ9Y2B9 76 aa8.59□□□□□ -1.03
HMGN1-211ENST00000471260 TRBV10-2A0A0K0K1G8 114 aa8.58□□□□□ -1.04
HMGN1-211ENST00000471260 SMIM1B2RUZ4 78 aa8.58□□□□□ -1.04
HMGN1-211ENST00000471260 XCL1P47992 114 aa8.58□□□□□ -1.04
HMGN1-211ENST00000471260 HIGD2BQ4VC39 106 aa8.58□□□□□ -1.04
HMGN1-211ENST00000471260 RNASE13Q5GAN3 156 aaKnown RBP8.58□□□□□ -1.04
HMGN1-211ENST00000471260 CD164L2Q6UWJ8 174 aa8.58□□□□□ -1.04
HMGN1-211ENST00000471260 MTURNQ8N3F0 131 aa8.58□□□□□ -1.04
HMGN1-211ENST00000471260 ANKRD29Q8N6D5 301 aa8.58□□□□□ -1.04
HMGN1-211ENST00000471260 C9JAW5 83 aa8.57□□□□□ -1.04
HMGN1-211ENST00000471260 TRIAP1O43715 76 aa8.57□□□□□ -1.04
HMGN1-211ENST00000471260 COX6A2Q02221 97 aa8.57□□□□□ -1.04
HMGN1-211ENST00000471260 PLAC8Q9NZF1 115 aa8.57□□□□□ -1.04
HMGN1-211ENST00000471260 PRSS2P07478 247 aa8.56□□□□□ -1.04
HMGN1-211ENST00000471260 ADAMTSL4-AS1Q5T5F5 129 aa8.56□□□□□ -1.04
HMGN1-211ENST00000471260 ZNF625Q96I27 306 aaPredicted RBP8.56□□□□□ -1.04
HMGN1-211ENST00000471260 LINC00474Q9P2X8 69 aa8.56□□□□□ -1.04
HMGN1-211ENST00000471260 LST1O00453 97 aa8.55□□□□□ -1.04
HMGN1-211ENST00000471260 CHTF8P0CG12 524 aa8.55□□□□□ -1.04
HMGN1-211ENST00000471260 SERTAD4-AS1Q5TG53 156 aa8.55□□□□□ -1.04
HMGN1-211ENST00000471260 LINC00308Q8TCZ7 52 aa8.55□□□□□ -1.04
HMGN1-211ENST00000471260 Q6ZRU5 148 aa8.54□□□□□ -1.04
HMGN1-211ENST00000471260 C7orf33Q8WU49 177 aa8.54□□□□□ -1.04
HMGN1-211ENST00000471260 CARD19Q96LW7 228 aa8.54□□□□□ -1.04
HMGN1-211ENST00000471260 CDIP1Q9H305 208 aa8.54□□□□□ -1.04
HMGN1-211ENST00000471260 LRP1Q07954 4544 aaKnown RBP8.54□□□□□ -1.04
HMGN1-211ENST00000471260 A0A1B0GV72 72 aa8.53□□□□□ -1.04
HMGN1-211ENST00000471260 ZNF561-AS1K7EIQ3 104 aa8.53□□□□□ -1.04
HMGN1-211ENST00000471260 FAM240AA0A1B0GVK7 77 aa8.52□□□□□ -1.05
HMGN1-211ENST00000471260 H7C2G1 150 aa8.52□□□□□ -1.05
HMGN1-211ENST00000471260 LINC01561Q8N1V8 128 aa8.52□□□□□ -1.05
HMGN1-211ENST00000471260 IGKV2-24A0A0C4DH68 120 aa8.51□□□□□ -1.05
HMGN1-211ENST00000471260 COX7A2LO14548 114 aa8.51□□□□□ -1.05
HMGN1-211ENST00000471260 MALP21145 153 aa8.51□□□□□ -1.05
HMGN1-211ENST00000471260 SYCNQ0VAF6 134 aa8.51□□□□□ -1.05
HMGN1-211ENST00000471260 MEIG1Q5JSS6 88 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 134 ms