RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 COX7B2Q8TF08 81 aa11.68□□□□□ -0.54
COL7A1-207ENST00000467985 DIRC1Q969H9 104 aa11.68□□□□□ -0.54
COL7A1-207ENST00000467985 CXCL5P42830 114 aa11.67□□□□□ -0.54
COL7A1-207ENST00000467985 C9orf129Q5T035 196 aaKnown RBP11.67□□□□□ -0.54
COL7A1-207ENST00000467985 ATOH7Q8N100 152 aa11.67□□□□□ -0.54
COL7A1-207ENST00000467985 UBE2BP63146 152 aa11.66□□□□□ -0.54
COL7A1-207ENST00000467985 KRTAP7-1Q8IUC3 87 aa11.65□□□□□ -0.54
COL7A1-207ENST00000467985 IGLV5-39A0A0G2JS06 123 aa11.64□□□□□ -0.55
COL7A1-207ENST00000467985 HSBP1L1C9JCN9 74 aa11.63□□□□□ -0.55
COL7A1-207ENST00000467985 KRTAP11-1Q8IUC1 163 aa11.63□□□□□ -0.55
COL7A1-207ENST00000467985 PLEKHB2Q96CS7 222 aa11.62□□□□□ -0.55
COL7A1-207ENST00000467985 H0Y9J4 135 aa11.61□□□□□ -0.55
COL7A1-207ENST00000467985 LEPROTO15243 131 aa11.61□□□□□ -0.55
COL7A1-207ENST00000467985 LGALS3P17931 250 aaKnown RBP11.6□□□□□ -0.55
COL7A1-207ENST00000467985 LBHQ53QV2 105 aaPredicted RBP11.6□□□□□ -0.55
COL7A1-207ENST00000467985 LRP2P98164 4655 aa11.6□□□□□ -0.55
COL7A1-207ENST00000467985 E9PLD3 99 aa11.59□□□□□ -0.55
COL7A1-207ENST00000467985 XAGE1AQ9HD64 81 aa11.59□□□□□ -0.55
COL7A1-207ENST00000467985 J3QQQ9 107 aa11.58□□□□□ -0.56
COL7A1-207ENST00000467985 JOSD1Q15040 202 aaPredicted RBP11.58□□□□□ -0.56
COL7A1-207ENST00000467985 SFTA2Q6UW10 78 aa11.58□□□□□ -0.56
COL7A1-207ENST00000467985 C22orf24Q9Y442 160 aa11.58□□□□□ -0.56
COL7A1-207ENST00000467985 TP73-AS1Q9UF72 201 aa11.57□□□□□ -0.56
COL7A1-207ENST00000467985 NMUP48645 174 aa11.56□□□□□ -0.56
COL7A1-207ENST00000467985 NDUFA12Q9UI09 145 aa11.56□□□□□ -0.56
COL7A1-207ENST00000467985 MYMXA0A1B0GTQ4 84 aa11.55□□□□□ -0.56
COL7A1-207ENST00000467985 TSPEAR-AS2P59090 65 aa11.54□□□□□ -0.56
COL7A1-207ENST00000467985 ZNF625Q96I27 306 aaPredicted RBP11.54□□□□□ -0.56
COL7A1-207ENST00000467985 IGLV1-50A0A075B6I6 118 aa11.53□□□□□ -0.56
COL7A1-207ENST00000467985 ANKRD39Q53RE8 183 aa11.53□□□□□ -0.56
COL7A1-207ENST00000467985 MRPL55Q7Z7F7 128 aaKnown RBP11.53□□□□□ -0.56
COL7A1-207ENST00000467985 VAMP8Q9BV40 100 aa11.53□□□□□ -0.56
COL7A1-207ENST00000467985 HERV-K104P63124 156 aa11.52□□□□□ -0.57
COL7A1-207ENST00000467985 MEIG1Q5JSS6 88 aa11.52□□□□□ -0.57
COL7A1-207ENST00000467985 IGKV2D-26A0A0A0MRZ7 120 aa11.51□□□□□ -0.57
COL7A1-207ENST00000467985 ZNF861PO60384 105 aa11.51□□□□□ -0.57
COL7A1-207ENST00000467985 PYY3Q5JQD4 70 aa11.51□□□□□ -0.57
COL7A1-207ENST00000467985 PRR26Q8N8Z3 221 aa11.51□□□□□ -0.57
COL7A1-207ENST00000467985 ZNF815PA8K554 130 aa11.5□□□□□ -0.57
COL7A1-207ENST00000467985 KRTAP1-4P0C5Y4 121 aa11.49□□□□□ -0.57
COL7A1-207ENST00000467985 PFN2P35080 140 aa11.49□□□□□ -0.57
COL7A1-207ENST00000467985 ERG28Q9UKR5 140 aa11.49□□□□□ -0.57
COL7A1-207ENST00000467985 PAM16Q9Y3D7 125 aa11.49□□□□□ -0.57
COL7A1-207ENST00000467985 LINC00587B1AMM8 73 aa11.48□□□□□ -0.57
COL7A1-207ENST00000467985 RPL13AP40429 203 aaKnown RBP11.48□□□□□ -0.57
COL7A1-207ENST00000467985 IGLV5-37A0A075B6J1 123 aa11.47□□□□□ -0.57
COL7A1-207ENST00000467985 LINC00158P58513 81 aa11.47□□□□□ -0.57
COL7A1-207ENST00000467985 SPATA45Q537H7 98 aa11.47□□□□□ -0.57
COL7A1-207ENST00000467985 BCE1O60756 84 aa11.46□□□□□ -0.57
COL7A1-207ENST00000467985 RPL28P46779 137 aaKnown RBP11.46□□□□□ -0.57
COL7A1-207ENST00000467985 S100A12P80511 92 aa11.46□□□□□ -0.57
COL7A1-207ENST00000467985 SCGB1D4Q6XE38 83 aa11.46□□□□□ -0.57
COL7A1-207ENST00000467985 NKAPP1Q8N9T2 125 aa11.46□□□□□ -0.57
COL7A1-207ENST00000467985 LINC00167Q96N53 147 aa11.46□□□□□ -0.57
COL7A1-207ENST00000467985 TTTY13Q9BZ97 58 aa11.46□□□□□ -0.57
COL7A1-207ENST00000467985 A0A0U1RRA0 63 aa11.45□□□□□ -0.58
COL7A1-207ENST00000467985 LOC105371267A0A1B0GV96 52 aa11.45□□□□□ -0.58
COL7A1-207ENST00000467985 COX17Q14061 63 aa11.45□□□□□ -0.58
COL7A1-207ENST00000467985 PCP2Q8IVA1 136 aa11.44□□□□□ -0.58
COL7A1-207ENST00000467985 RPL37AP8A6NKH3 93 aa11.43□□□□□ -0.58
COL7A1-207ENST00000467985 SMIM13P0DJ93 91 aa11.43□□□□□ -0.58
COL7A1-207ENST00000467985 A0A0J9YXY3 114 aa11.42□□□□□ -0.58
COL7A1-207ENST00000467985 SMIM6P0DI80 62 aa11.42□□□□□ -0.58
COL7A1-207ENST00000467985 GAGE10A6NGK3 116 aa11.41□□□□□ -0.58
COL7A1-207ENST00000467985 COX8AP10176 69 aa11.39□□□□□ -0.59
COL7A1-207ENST00000467985 SND1-IT1Q9HBX3 110 aa11.39□□□□□ -0.59
COL7A1-207ENST00000467985 RPL24P83731 157 aaKnown RBP11.38□□□□□ -0.59
COL7A1-207ENST00000467985 MIR7-3HGQ8N6C7 128 aa11.38□□□□□ -0.59
COL7A1-207ENST00000467985 C14orf144Q96I85 54 aa11.38□□□□□ -0.59
COL7A1-207ENST00000467985 RNF213Q63HN8 5207 aa11.38□□□□□ -0.59
COL7A1-207ENST00000467985 TMEM238C9JI98 176 aa11.37□□□□□ -0.59
COL7A1-207ENST00000467985 MIEN1Q9BRT3 115 aa11.37□□□□□ -0.59
COL7A1-207ENST00000467985 TIMM17BO60830 172 aa11.36□□□□□ -0.59
COL7A1-207ENST00000467985 UBE2AP49459 152 aa11.36□□□□□ -0.59
COL7A1-207ENST00000467985 SLC25A34Q6PIV7 304 aa11.36□□□□□ -0.59
COL7A1-207ENST00000467985 DAND5Q8N907 189 aa11.36□□□□□ -0.59
COL7A1-207ENST00000467985 IGKV2-28A0A075B6P5 120 aa11.35□□□□□ -0.59
COL7A1-207ENST00000467985 IGKV2D-28P01615 120 aa11.35□□□□□ -0.59
COL7A1-207ENST00000467985 VPREB1P12018 145 aa11.35□□□□□ -0.59
COL7A1-207ENST00000467985 BOD1L2Q8IYS8 172 aa11.35□□□□□ -0.59
COL7A1-207ENST00000467985 KRTAP13-1Q8IUC0 172 aa11.34□□□□□ -0.59
COL7A1-207ENST00000467985 DLEU1O43261 78 aa11.33□□□□□ -0.6
COL7A1-207ENST00000467985 CRYGAP11844 174 aa11.33□□□□□ -0.6
COL7A1-207ENST00000467985 NPC2P61916 151 aa11.33□□□□□ -0.6
COL7A1-207ENST00000467985 ADAMTSL4-AS1Q5T5F5 129 aa11.31□□□□□ -0.6
COL7A1-207ENST00000467985 COPS9Q8WXC6 57 aa11.31□□□□□ -0.6
COL7A1-207ENST00000467985 C12orf57Q99622 126 aa11.3□□□□□ -0.6
COL7A1-207ENST00000467985 LITAFQ99732 161 aa11.3□□□□□ -0.6
COL7A1-207ENST00000467985 A0A087X002 238 aa11.29□□□□□ -0.6
COL7A1-207ENST00000467985 SPANXDQ9BXN6 97 aa11.29□□□□□ -0.6
COL7A1-207ENST00000467985 TMEM126AQ9H061 195 aa11.29□□□□□ -0.6
COL7A1-207ENST00000467985 SPANXCQ9NY87 97 aa11.29□□□□□ -0.6
COL7A1-207ENST00000467985 LPAP08519 4548 aa11.28□□□□□ -0.6
COL7A1-207ENST00000467985 Q6ZVH6 145 aa11.28□□□□□ -0.6
COL7A1-207ENST00000467985 TYMSOSQ8TAI1 123 aa11.28□□□□□ -0.6
COL7A1-207ENST00000467985 UQCR10Q9UDW1 63 aa11.28□□□□□ -0.6
COL7A1-207ENST00000467985 FAM229BQ4G0N7 80 aa11.27□□□□□ -0.61
COL7A1-207ENST00000467985 LINC00308Q8TCZ7 52 aa11.27□□□□□ -0.61
COL7A1-207ENST00000467985 HIST1H4GQ99525 98 aa11.27□□□□□ -0.61
COL7A1-207ENST00000467985 IFITM1P13164 125 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 658.2 ms