RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ATOH7Q8N100 152 aa12.34□□□□□ -0.43
COL9A3-204ENST00000463487 C22orf24Q9Y442 160 aa12.34□□□□□ -0.43
COL9A3-204ENST00000463487 HSBP1L1C9JCN9 74 aa12.33□□□□□ -0.44
COL9A3-204ENST00000463487 MRPL55Q7Z7F7 128 aaKnown RBP12.33□□□□□ -0.44
COL9A3-204ENST00000463487 MIR7-3HGQ8N6C7 128 aa12.33□□□□□ -0.44
COL9A3-204ENST00000463487 IGLV5-37A0A075B6J1 123 aa12.31□□□□□ -0.44
COL9A3-204ENST00000463487 ZNF815PA8K554 130 aa12.31□□□□□ -0.44
COL9A3-204ENST00000463487 KRTAP10-4P60372 401 aaPredicted RBP12.31□□□□□ -0.44
COL9A3-204ENST00000463487 KRTAP7-1Q8IUC3 87 aa12.31□□□□□ -0.44
COL9A3-204ENST00000463487 MIEN1Q9BRT3 115 aa12.31□□□□□ -0.44
COL9A3-204ENST00000463487 SCGB1D1O95968 90 aa12.3□□□□□ -0.44
COL9A3-204ENST00000463487 PSORS1C2Q9UIG4 136 aa12.29□□□□□ -0.44
COL9A3-204ENST00000463487 IGKV2D-26A0A0A0MRZ7 120 aa12.28□□□□□ -0.44
COL9A3-204ENST00000463487 A0A0J9YXY3 114 aa12.28□□□□□ -0.44
COL9A3-204ENST00000463487 VPREB1P12018 145 aa12.27□□□□□ -0.45
COL9A3-204ENST00000463487 C1orf137Q5JT78 98 aa12.27□□□□□ -0.45
COL9A3-204ENST00000463487 BOD1L2Q8IYS8 172 aa12.27□□□□□ -0.45
COL9A3-204ENST00000463487 ANKRD39Q53RE8 183 aa12.26□□□□□ -0.45
COL9A3-204ENST00000463487 TMA7Q9Y2S6 64 aaKnown RBP12.26□□□□□ -0.45
COL9A3-204ENST00000463487 FAT1Q14517 4588 aa12.26□□□□□ -0.45
COL9A3-204ENST00000463487 TIMM17BO60830 172 aa12.25□□□□□ -0.45
COL9A3-204ENST00000463487 SCGB1D4Q6XE38 83 aa12.25□□□□□ -0.45
COL9A3-204ENST00000463487 VPS13BQ7Z7G8 4022 aa12.25□□□□□ -0.45
COL9A3-204ENST00000463487 GAGE10A6NGK3 116 aa12.24□□□□□ -0.45
COL9A3-204ENST00000463487 DAND5Q8N907 189 aa12.24□□□□□ -0.45
COL9A3-204ENST00000463487 LINC00167Q96N53 147 aa12.24□□□□□ -0.45
COL9A3-204ENST00000463487 SRRM2Q9UQ35 2752 aaKnown RBP12.22□□□□□ -0.45
COL9A3-204ENST00000463487 LOC107984156A0A0G2JMH3 177 aa12.22□□□□□ -0.45
COL9A3-204ENST00000463487 ARL17AQ8IVW1 177 aa12.22□□□□□ -0.45
COL9A3-204ENST00000463487 TTTY13Q9BZ97 58 aa12.22□□□□□ -0.45
COL9A3-204ENST00000463487 RPL37AP8A6NKH3 93 aa12.21□□□□□ -0.45
COL9A3-204ENST00000463487 TMEM238C9JI98 176 aa12.21□□□□□ -0.45
COL9A3-204ENST00000463487 M0R378 163 aa12.21□□□□□ -0.45
COL9A3-204ENST00000463487 SPINK6Q6UWN8 80 aa12.2□□□□□ -0.46
COL9A3-204ENST00000463487 COPS9Q8WXC6 57 aa12.2□□□□□ -0.46
COL9A3-204ENST00000463487 IGLV7-43P04211 117 aa12.19□□□□□ -0.46
COL9A3-204ENST00000463487 KRTAP11-1Q8IUC1 163 aa12.19□□□□□ -0.46
COL9A3-204ENST00000463487 PCLOQ9Y6V0 5065 aa12.19□□□□□ -0.46
COL9A3-204ENST00000463487 IGKV2-28A0A075B6P5 120 aa12.18□□□□□ -0.46
COL9A3-204ENST00000463487 IGKV2D-28P01615 120 aa12.18□□□□□ -0.46
COL9A3-204ENST00000463487 HNRNPA3P51991 378 aaKnown RBP12.18□□□□□ -0.46
COL9A3-204ENST00000463487 S100A12P80511 92 aa12.18□□□□□ -0.46
COL9A3-204ENST00000463487 ADAMTSL4-AS1Q5T5F5 129 aa12.18□□□□□ -0.46
COL9A3-204ENST00000463487 ABCA13Q86UQ4 5058 aa12.17□□□□□ -0.46
COL9A3-204ENST00000463487 IGLV1-50A0A075B6I6 118 aa12.17□□□□□ -0.46
COL9A3-204ENST00000463487 NDUFC2O95298 119 aa12.17□□□□□ -0.46
COL9A3-204ENST00000463487 PCP2Q8IVA1 136 aa12.17□□□□□ -0.46
COL9A3-204ENST00000463487 SPANXB1Q9NS25 103 aaPredicted RBP12.17□□□□□ -0.46
COL9A3-204ENST00000463487 NCR3O14931 201 aa12.16□□□□□ -0.46
COL9A3-204ENST00000463487 Q8NDZ9 215 aa12.16□□□□□ -0.46
COL9A3-204ENST00000463487 LITAFQ99732 161 aa12.16□□□□□ -0.46
COL9A3-204ENST00000463487 TRBV10-2A0A0K0K1G8 114 aa12.15□□□□□ -0.46
COL9A3-204ENST00000463487 BCE1O60756 84 aa12.15□□□□□ -0.46
COL9A3-204ENST00000463487 NPC2P61916 151 aa12.15□□□□□ -0.46
COL9A3-204ENST00000463487 JOSD1Q15040 202 aaPredicted RBP12.15□□□□□ -0.46
COL9A3-204ENST00000463487 Q6ZVH6 145 aa12.15□□□□□ -0.46
COL9A3-204ENST00000463487 SRSF9Q13242 221 aaKnown RBP eCLIP12.14□□□□□ -0.473e-7■□□□□ 10.2
COL9A3-204ENST00000463487 REG3GQ6UW15 175 aa12.14□□□□□ -0.47
COL9A3-204ENST00000463487 LINC00308Q8TCZ7 52 aa12.14□□□□□ -0.47
COL9A3-204ENST00000463487 DIRC1Q969H9 104 aa12.14□□□□□ -0.47
COL9A3-204ENST00000463487 SPANXDQ9BXN6 97 aa12.14□□□□□ -0.47
COL9A3-204ENST00000463487 SPANXCQ9NY87 97 aa12.14□□□□□ -0.47
COL9A3-204ENST00000463487 RPL28P46779 137 aaKnown RBP12.13□□□□□ -0.47
COL9A3-204ENST00000463487 OXTP01178 125 aa12.12□□□□□ -0.47
COL9A3-204ENST00000463487 VAMP8Q9BV40 100 aa12.12□□□□□ -0.47
COL9A3-204ENST00000463487 FLG2Q5D862 2391 aaPredicted RBP12.12□□□□□ -0.47
COL9A3-204ENST00000463487 IFITM1P13164 125 aa12.11□□□□□ -0.47
COL9A3-204ENST00000463487 UBE2AP49459 152 aa12.11□□□□□ -0.47
COL9A3-204ENST00000463487 S100A7L2Q5SY68 101 aa12.11□□□□□ -0.47
COL9A3-204ENST00000463487 SOSTDC1Q6X4U4 206 aa12.11□□□□□ -0.47
COL9A3-204ENST00000463487 CBY1Q9Y3M2 126 aa12.11□□□□□ -0.47
COL9A3-204ENST00000463487 ZNF861PO60384 105 aa12.1□□□□□ -0.47
COL9A3-204ENST00000463487 TMEM126AQ9H061 195 aa12.1□□□□□ -0.47
COL9A3-204ENST00000463487 PRYO14603 147 aa12.09□□□□□ -0.47
COL9A3-204ENST00000463487 PPDPFQ9H3Y8 114 aa12.09□□□□□ -0.47
COL9A3-204ENST00000463487 KRTAP29-1A8MX34 341 aaPredicted RBP12.08□□□□□ -0.48
COL9A3-204ENST00000463487 J3QL48 77 aa12.08□□□□□ -0.48
COL9A3-204ENST00000463487 COX8AP10176 69 aa12.08□□□□□ -0.48
COL9A3-204ENST00000463487 DDTP30046 118 aa12.08□□□□□ -0.48
COL9A3-204ENST00000463487 PAM16Q9Y3D7 125 aa12.08□□□□□ -0.48
COL9A3-204ENST00000463487 TRBV10-3A0A0K0K1G6 114 aa12.07□□□□□ -0.48
COL9A3-204ENST00000463487 H0Y9J4 135 aa12.07□□□□□ -0.48
COL9A3-204ENST00000463487 SPATA45Q537H7 98 aa12.07□□□□□ -0.48
COL9A3-204ENST00000463487 LINC00518Q8N0U6 118 aa12.07□□□□□ -0.48
COL9A3-204ENST00000463487 FAM19A1Q7Z5A9 133 aa12.06□□□□□ -0.48
COL9A3-204ENST00000463487 KCNQ1DNQ9H478 68 aa12.06□□□□□ -0.48
COL9A3-204ENST00000463487 EIF4EBP3O60516 100 aaPredicted RBP12.05□□□□□ -0.48
COL9A3-204ENST00000463487 DLEU1O43261 78 aa12.04□□□□□ -0.48
COL9A3-204ENST00000463487 OR13C6PQ8NH95 151 aa12.03□□□□□ -0.48
COL9A3-204ENST00000463487 ETDCA0A1B0GVM5 59 aa12.02□□□□□ -0.49
COL9A3-204ENST00000463487 IGLV6-57P01721 117 aa12.02□□□□□ -0.49
COL9A3-204ENST00000463487 PYY3Q5JQD4 70 aa12.02□□□□□ -0.49
COL9A3-204ENST00000463487 LINC00337Q8N6G1 96 aa12.02□□□□□ -0.49
COL9A3-204ENST00000463487 MUSTN1Q8IVN3 82 aa12.01□□□□□ -0.49
COL9A3-204ENST00000463487 TRAV23DV6A0A075B6W5 121 aa12□□□□□ -0.49
COL9A3-204ENST00000463487 PRLHP81277 87 aa12□□□□□ -0.49
COL9A3-204ENST00000463487 SLC25A34Q6PIV7 304 aa12□□□□□ -0.49
COL9A3-204ENST00000463487 C14orf144Q96I85 54 aa12□□□□□ -0.49
COL9A3-204ENST00000463487 PKHD1L1Q86WI1 4243 aa11.99□□□□□ -0.49
COL9A3-204ENST00000463487 SPRR1AP35321 89 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms