RNA–Protein interactions for RNA: ENST00000443563.5

HDAC6-211, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-211ENST00000443563 SERTAD4-AS1Q5TG53 156 aa6.72□□□□□ -1.33
HDAC6-211ENST00000443563 KRTAP7-1Q8IUC3 87 aa6.72□□□□□ -1.33
HDAC6-211ENST00000443563 NKAPP1Q8N9T2 125 aa6.72□□□□□ -1.33
HDAC6-211ENST00000443563 SND1-IT1Q9HBX3 110 aa6.72□□□□□ -1.33
HDAC6-211ENST00000443563 PSORS1C2Q9UIG4 136 aa6.72□□□□□ -1.33
HDAC6-211ENST00000443563 IGLV5-37A0A075B6J1 123 aa6.71□□□□□ -1.34
HDAC6-211ENST00000443563 MRPL55Q7Z7F7 128 aaKnown RBP6.71□□□□□ -1.34
HDAC6-211ENST00000443563 SMIM13P0DJ93 91 aa6.7□□□□□ -1.34
HDAC6-211ENST00000443563 TSPEAR-AS2P59090 65 aa6.7□□□□□ -1.34
HDAC6-211ENST00000443563 C1orf137Q5JT78 98 aa6.7□□□□□ -1.34
HDAC6-211ENST00000443563 SPINK6Q6UWN8 80 aa6.7□□□□□ -1.34
HDAC6-211ENST00000443563 HIST3H2BBQ8N257 126 aa6.7□□□□□ -1.34
HDAC6-211ENST00000443563 A0A0U1RRA0 63 aa6.69□□□□□ -1.34
HDAC6-211ENST00000443563 OXTP01178 125 aa6.69□□□□□ -1.34
HDAC6-211ENST00000443563 HNRNPA3P51991 378 aaKnown RBP6.69□□□□□ -1.34
HDAC6-211ENST00000443563 KRTAP29-1A8MX34 341 aaPredicted RBP6.68□□□□□ -1.34
HDAC6-211ENST00000443563 HIST1H2BLQ99880 126 aa6.68□□□□□ -1.34
HDAC6-211ENST00000443563 LRP1Q07954 4544 aaKnown RBP6.68□□□□□ -1.34
HDAC6-211ENST00000443563 VPREB1P12018 145 aa6.67□□□□□ -1.34
HDAC6-211ENST00000443563 MIR7-3HGQ8N6C7 128 aa6.67□□□□□ -1.34
HDAC6-211ENST00000443563 LINC00167Q96N53 147 aa6.67□□□□□ -1.34
HDAC6-211ENST00000443563 J3QL48 77 aa6.66□□□□□ -1.34
HDAC6-211ENST00000443563 IGLV7-43P04211 117 aa6.66□□□□□ -1.34
HDAC6-211ENST00000443563 SNRPEP62304 92 aaKnown RBP6.66□□□□□ -1.34
HDAC6-211ENST00000443563 SRSF9Q13242 221 aaKnown RBP eCLIP6.66□□□□□ -1.34
HDAC6-211ENST00000443563 REG3GQ6UW15 175 aa6.66□□□□□ -1.34
HDAC6-211ENST00000443563 MIEN1Q9BRT3 115 aa6.66□□□□□ -1.34
HDAC6-211ENST00000443563 FLG2Q5D862 2391 aaPredicted RBP6.66□□□□□ -1.34
HDAC6-211ENST00000443563 GAGE10A6NGK3 116 aa6.65□□□□□ -1.34
HDAC6-211ENST00000443563 KRTAP11-1Q8IUC1 163 aa6.65□□□□□ -1.34
HDAC6-211ENST00000443563 DIRC1Q969H9 104 aa6.65□□□□□ -1.34
HDAC6-211ENST00000443563 A0A0J9YXY3 114 aa6.64□□□□□ -1.35
HDAC6-211ENST00000443563 C5orf52A6NGY3 159 aa6.64□□□□□ -1.35
HDAC6-211ENST00000443563 RPL37AP8A6NKH3 93 aa6.64□□□□□ -1.35
HDAC6-211ENST00000443563 M0R378 163 aa6.64□□□□□ -1.35
HDAC6-211ENST00000443563 BOD1L2Q8IYS8 172 aa6.64□□□□□ -1.35
HDAC6-211ENST00000443563 IGLV1-50A0A075B6I6 118 aa6.63□□□□□ -1.35
HDAC6-211ENST00000443563 IGKV2D-26A0A0A0MRZ7 120 aa6.63□□□□□ -1.35
HDAC6-211ENST00000443563 LOC107984156A0A0G2JMH3 177 aa6.63□□□□□ -1.35
HDAC6-211ENST00000443563 ZNF815PA8K554 130 aa6.63□□□□□ -1.35
HDAC6-211ENST00000443563 BCE1O60756 84 aa6.63□□□□□ -1.35
HDAC6-211ENST00000443563 TIMM17BO60830 172 aa6.63□□□□□ -1.35
HDAC6-211ENST00000443563 ARL17AQ8IVW1 177 aa6.63□□□□□ -1.35
HDAC6-211ENST00000443563 ATOH7Q8N100 152 aa6.63□□□□□ -1.35
HDAC6-211ENST00000443563 IGKV2-28A0A075B6P5 120 aa6.62□□□□□ -1.35
HDAC6-211ENST00000443563 HSBP1L1C9JCN9 74 aa6.62□□□□□ -1.35
HDAC6-211ENST00000443563 IGKV2D-28P01615 120 aa6.62□□□□□ -1.35
HDAC6-211ENST00000443563 S100A12P80511 92 aa6.62□□□□□ -1.35
HDAC6-211ENST00000443563 DMBT1Q9UGM3 2413 aaPredicted RBP6.61□□□□□ -1.35
HDAC6-211ENST00000443563 H0Y9J4 135 aa6.61□□□□□ -1.35
HDAC6-211ENST00000443563 ZNF861PO60384 105 aa6.61□□□□□ -1.35
HDAC6-211ENST00000443563 NDUFC2O95298 119 aa6.61□□□□□ -1.35
HDAC6-211ENST00000443563 RPL28P46779 137 aaKnown RBP6.61□□□□□ -1.35
HDAC6-211ENST00000443563 DAND5Q8N907 189 aa6.61□□□□□ -1.35
HDAC6-211ENST00000443563 HERC1Q15751 4861 aa6.6□□□□□ -1.35
HDAC6-211ENST00000443563 TRBV10-2A0A0K0K1G8 114 aa6.6□□□□□ -1.35
HDAC6-211ENST00000443563 ANKRD39Q53RE8 183 aa6.6□□□□□ -1.35
HDAC6-211ENST00000443563 SCGB1D4Q6XE38 83 aa6.6□□□□□ -1.35
HDAC6-211ENST00000443563 Q8NDZ9 215 aa6.6□□□□□ -1.35
HDAC6-211ENST00000443563 TMEM238C9JI98 176 aa6.59□□□□□ -1.35
HDAC6-211ENST00000443563 NCR3O14931 201 aa6.59□□□□□ -1.35
HDAC6-211ENST00000443563 SCGB1D1O95968 90 aa6.59□□□□□ -1.35
HDAC6-211ENST00000443563 UBE2AP49459 152 aa6.59□□□□□ -1.35
HDAC6-211ENST00000443563 ADAMTSL4-AS1Q5T5F5 129 aa6.59□□□□□ -1.35
HDAC6-211ENST00000443563 COPS9Q8WXC6 57 aa6.59□□□□□ -1.35
HDAC6-211ENST00000443563 LINC01600Q96MT4 127 aa6.59□□□□□ -1.35
HDAC6-211ENST00000443563 TMEM126AQ9H061 195 aa6.59□□□□□ -1.35
HDAC6-211ENST00000443563 SPANXB1Q9NS25 103 aaPredicted RBP6.59□□□□□ -1.35
HDAC6-211ENST00000443563 PRYO14603 147 aa6.58□□□□□ -1.36
HDAC6-211ENST00000443563 TTTY13Q9BZ97 58 aa6.58□□□□□ -1.36
HDAC6-211ENST00000443563 TNXBP22105 4242 aa6.57□□□□□ -1.36
HDAC6-211ENST00000443563 NPC2P61916 151 aa6.57□□□□□ -1.36
HDAC6-211ENST00000443563 Q6ZVH6 145 aa6.57□□□□□ -1.36
HDAC6-211ENST00000443563 LINC00308Q8TCZ7 52 aa6.57□□□□□ -1.36
HDAC6-211ENST00000443563 LITAFQ99732 161 aa6.57□□□□□ -1.36
HDAC6-211ENST00000443563 SPANXDQ9BXN6 97 aa6.57□□□□□ -1.36
HDAC6-211ENST00000443563 SPANXCQ9NY87 97 aa6.57□□□□□ -1.36
HDAC6-211ENST00000443563 CBY1Q9Y3M2 126 aa6.57□□□□□ -1.36
HDAC6-211ENST00000443563 DDTP30046 118 aa6.56□□□□□ -1.36
HDAC6-211ENST00000443563 S100A7L2Q5SY68 101 aa6.56□□□□□ -1.36
HDAC6-211ENST00000443563 FAM19A1Q7Z5A9 133 aa6.56□□□□□ -1.36
HDAC6-211ENST00000443563 TRBV10-3A0A0K0K1G6 114 aa6.55□□□□□ -1.36
HDAC6-211ENST00000443563 IFITM1P13164 125 aa6.55□□□□□ -1.36
HDAC6-211ENST00000443563 SOSTDC1Q6X4U4 206 aa6.55□□□□□ -1.36
HDAC6-211ENST00000443563 PCP2Q8IVA1 136 aa6.55□□□□□ -1.36
HDAC6-211ENST00000443563 KCNQ1DNQ9H478 68 aa6.55□□□□□ -1.36
HDAC6-211ENST00000443563 KRTAP13-1Q8IUC0 172 aa6.54□□□□□ -1.36
HDAC6-211ENST00000443563 LINC00518Q8N0U6 118 aa6.54□□□□□ -1.36
HDAC6-211ENST00000443563 LINC00337Q8N6G1 96 aa6.54□□□□□ -1.36
HDAC6-211ENST00000443563 PPDPFQ9H3Y8 114 aa6.54□□□□□ -1.36
HDAC6-211ENST00000443563 ETDCA0A1B0GVM5 59 aa6.53□□□□□ -1.36
HDAC6-211ENST00000443563 MT1HL1P0DM35 61 aa6.53□□□□□ -1.36
HDAC6-211ENST00000443563 EIF4EBP3O60516 100 aaPredicted RBP6.52□□□□□ -1.37
HDAC6-211ENST00000443563 IGLV6-57P01721 117 aa6.52□□□□□ -1.37
HDAC6-211ENST00000443563 SPRR1AP35321 89 aa6.52□□□□□ -1.37
HDAC6-211ENST00000443563 RPL13AP40429 203 aaKnown RBP6.52□□□□□ -1.37
HDAC6-211ENST00000443563 KRTAP10-8P60410 259 aa6.52□□□□□ -1.37
HDAC6-211ENST00000443563 PRLHP81277 87 aa6.52□□□□□ -1.37
HDAC6-211ENST00000443563 TRAV23DV6A0A075B6W5 121 aa6.51□□□□□ -1.37
HDAC6-211ENST00000443563 JOSD1Q15040 202 aaPredicted RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms