RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 A8MWP4 228 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 SNRPD3P62318 126 aaKnown RBP3.29□□□□□ -1.88
VPS13A-207ENST00000419472 CIRBPQ14011 172 aaKnown RBP3.29□□□□□ -1.88
VPS13A-207ENST00000419472 GPHB5Q86YW7 130 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 DYNAPQ8N1N2 210 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 PRRC2AP48634 2157 aaKnown RBP3.29□□□□□ -1.88
VPS13A-207ENST00000419472 A0A0J9YX75 114 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 I3L3M4 83 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 TIMM17BO60830 172 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 S4R3C0 116 aa3.29□□□□□ -1.88
VPS13A-207ENST00000419472 AKAP9Q99996 3911 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 WNK1Q9H4A3 2382 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 A0A087WVE0 104 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 A0A096LNT2 108 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 BCE1O60756 84 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 ATP5EP56381 51 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-207ENST00000419472 WT1-ASQ06250 92 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 PLGLAQ15195 96 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 ZNF833PQ6ZTB9 187 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 LYPD1Q8N2G4 141 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 C22orf24Q9Y442 160 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 BIRC6Q9NR09 4857 aa3.28□□□□□ -1.88
VPS13A-207ENST00000419472 SDHAF1A6NFY7 115 aa3.28□□□□□ -1.89
VPS13A-207ENST00000419472 KLKP1Q107X0 134 aa3.28□□□□□ -1.89
VPS13A-207ENST00000419472 C20orf197Q8N268 126 aa3.28□□□□□ -1.89
VPS13A-207ENST00000419472 MIR7-3HGQ8N6C7 128 aa3.28□□□□□ -1.89
VPS13A-207ENST00000419472 BPESC1Q9GZL8 116 aa3.28□□□□□ -1.89
VPS13A-207ENST00000419472 KAAG1Q9UBP8 84 aa3.28□□□□□ -1.89
VPS13A-207ENST00000419472 RYR3Q15413 4870 aa3.28□□□□□ -1.89
VPS13A-207ENST00000419472 BUB1B-PAK6H3BSN5 160 aa3.27□□□□□ -1.89
VPS13A-207ENST00000419472 LEPROTO15243 131 aa3.27□□□□□ -1.89
VPS13A-207ENST00000419472 LGALS3P17931 250 aaKnown RBP3.27□□□□□ -1.89
VPS13A-207ENST00000419472 SMIM2Q9BVW6 85 aa3.27□□□□□ -1.89
VPS13A-207ENST00000419472 MRPL36Q9P0J6 103 aaKnown RBP3.27□□□□□ -1.89
VPS13A-207ENST00000419472 TRBV19A0A075B6N1 114 aa3.27□□□□□ -1.89
VPS13A-207ENST00000419472 IGKV3D-7A0A0C4DH55 119 aa3.27□□□□□ -1.89
VPS13A-207ENST00000419472 IGIPA6NJ69 53 aa3.27□□□□□ -1.89
VPS13A-207ENST00000419472 IBA57-AS1B1ANH7 110 aa3.27□□□□□ -1.89
VPS13A-207ENST00000419472 M0R3E3 92 aa3.27□□□□□ -1.89
VPS13A-207ENST00000419472 ERHP84090 104 aaKnown RBP3.26□□□□□ -1.89
VPS13A-207ENST00000419472 KRTAP1-1Q07627 177 aa3.26□□□□□ -1.89
VPS13A-207ENST00000419472 TM2D3Q9BRN9 247 aa3.26□□□□□ -1.89
VPS13A-207ENST00000419472 NDUFA4L2Q9NRX3 87 aa3.26□□□□□ -1.89
VPS13A-207ENST00000419472 IGHV3OR16-8A0A075B7F1 116 aa3.26□□□□□ -1.89
VPS13A-207ENST00000419472 VMO1Q7Z5L0 202 aa3.26□□□□□ -1.89
VPS13A-207ENST00000419472 Q8N2B8 174 aa3.26□□□□□ -1.89
VPS13A-207ENST00000419472 SORL1Q92673 2214 aa3.26□□□□□ -1.89
VPS13A-207ENST00000419472 UBR4Q5T4S7 5183 aa3.26□□□□□ -1.89
VPS13A-207ENST00000419472 HIVEP2P31629 2446 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 IGHV1-58A0A0C4DH39 117 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 NDUFC1O43677 76 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 BAALC-AS2P0C853 105 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 BRD3OSQ6XYD6 125 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 PCLOQ9Y6V0 5065 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 CR1P17927 2039 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.25□□□□□ -1.89
VPS13A-207ENST00000419472 TRAV7A0A075B6U4 112 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 TRAV13-2A0A0B4J235 113 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 RPL28P46779 137 aaKnown RBP3.25□□□□□ -1.89
VPS13A-207ENST00000419472 RBM3P98179 157 aaKnown RBP3.25□□□□□ -1.89
VPS13A-207ENST00000419472 LINC00846Q9NV44 126 aa3.25□□□□□ -1.89
VPS13A-207ENST00000419472 KMT2CQ8NEZ4 4911 aaKnown RBP3.25□□□□□ -1.89
VPS13A-207ENST00000419472 B4DSR2 109 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 K7ERS5 55 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 RPL27AP46776 148 aaKnown RBP3.24□□□□□ -1.89
VPS13A-207ENST00000419472 TMEM167AQ8TBQ9 72 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 M0R1W7 72 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 ZNF80P51504 273 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-207ENST00000419472 DSCR10P59022 87 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 ATP5EP2Q5VTU8 51 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 TMEM141Q96I45 108 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 OBSCN-AS1Q96MR7 158 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 RNF5Q99942 180 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 RYR1P21817 5038 aa3.24□□□□□ -1.89
VPS13A-207ENST00000419472 TRBV10-3A0A0K0K1G6 114 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 FAM229BQ4G0N7 80 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 SCXQ7RTU7 201 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 F8WEM9 126 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 DNAL4O96015 105 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 LY6EQ16553 131 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 MIAQ16674 131 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 LINC00588Q9Y4M8 146 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 TRAV23DV6A0A075B6W5 121 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 MSMBP08118 114 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 PDE6HQ13956 83 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 Q5W150 140 aa3.23□□□□□ -1.89
VPS13A-207ENST00000419472 A8MUU9 505 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 G3V318 75 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 LCE1AQ5T7P2 110 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 Q6ZTC4 211 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 KTN1-AS1Q86SY8 53 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 ZFAND2AQ8N6M9 145 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 TRAV12-3A0A0B4J271 114 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 H3BRN7 92 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 S100A7L2Q5SY68 101 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 LCE1DQ5T752 114 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 Q6ZR54 194 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 RMI2Q96E14 147 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 SMR3AQ99954 134 aa3.22□□□□□ -1.89
VPS13A-207ENST00000419472 TRBV27A0A0K0K1C4 114 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms