RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 AKAP9Q99996 3911 aa3.84□□□□□ -1.79
CCDC88A-203ENST00000412148 USP9XQ93008 2570 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-203ENST00000412148 PKD1L2Q7Z442 2459 aa3.84□□□□□ -1.79
CCDC88A-203ENST00000412148 EGFEM1PQ0D2K5 195 aa3.84□□□□□ -1.79
CCDC88A-203ENST00000412148 SPATA3Q8NHX4 192 aa3.84□□□□□ -1.79
CCDC88A-203ENST00000412148 CFAP46Q8IYW2 2715 aa3.84□□□□□ -1.8
CCDC88A-203ENST00000412148 ZNF73O43830 326 aaPredicted RBP3.84□□□□□ -1.8
CCDC88A-203ENST00000412148 COX7BP24311 80 aa3.84□□□□□ -1.8
CCDC88A-203ENST00000412148 DAD1P61803 113 aa3.84□□□□□ -1.8
CCDC88A-203ENST00000412148 C10orf25Q5T742 122 aa3.84□□□□□ -1.8
CCDC88A-203ENST00000412148 UNQ6190/PRO20217Q6UXQ8 127 aa3.84□□□□□ -1.8
CCDC88A-203ENST00000412148 Q6ZQY7 126 aa3.84□□□□□ -1.8
CCDC88A-203ENST00000412148 M0R378 163 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 SPART-AS1P0CW21 52 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 C9orf116Q5BN46 136 aaPredicted RBP3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 KRTAP26-1Q6PEX3 210 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 C6orf48Q9UBA6 75 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 LAMTOR3Q9UHA4 124 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 COL12A1Q99715 3063 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 KRTAP10-3P60369 221 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 CLPSL2Q6UWE3 100 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 TEX15Q9BXT5 2789 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 IGSF10Q6WRI0 2623 aa3.83□□□□□ -1.8
CCDC88A-203ENST00000412148 A0A096LPF7 62 aa3.82□□□□□ -1.8
CCDC88A-203ENST00000412148 ZANQ9Y493 2812 aa3.82□□□□□ -1.8
CCDC88A-203ENST00000412148 C20orf197Q8N268 126 aa3.82□□□□□ -1.8
CCDC88A-203ENST00000412148 CHD6Q8TD26 2715 aa3.82□□□□□ -1.8
CCDC88A-203ENST00000412148 SETXQ7Z333 2677 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-203ENST00000412148 PRB1P04280 392 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 MRAPQ8TCY5 172 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 SPTBN4Q9H254 2564 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 FLNCQ14315 2725 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 IGLV10-54A0A075B6I4 117 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 IGLV5-48A0A075B6I7 105 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 M0R2N4 97 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 TLX1NBP0CAT3 122 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 Q8N3U1 123 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 WFDC9Q8NEX5 89 aa3.81□□□□□ -1.8
CCDC88A-203ENST00000412148 NCOR2Q9Y618 2525 aa3.8□□□□□ -1.8
CCDC88A-203ENST00000412148 SPG11Q96JI7 2443 aa3.8□□□□□ -1.8
CCDC88A-203ENST00000412148 SMIM26A0A096LP01 95 aa3.8□□□□□ -1.8
CCDC88A-203ENST00000412148 LCE6AA0A183 80 aa3.8□□□□□ -1.8
CCDC88A-203ENST00000412148 KCNQ1DNQ9H478 68 aa3.8□□□□□ -1.8
CCDC88A-203ENST00000412148 MAP1AP78559 2803 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-203ENST00000412148 IGLV5-37A0A075B6J1 123 aa3.8□□□□□ -1.8
CCDC88A-203ENST00000412148 CREBBPQ92793 2442 aa3.79□□□□□ -1.8
CCDC88A-203ENST00000412148 TRAV10A0A0B4J240 114 aa3.79□□□□□ -1.8
CCDC88A-203ENST00000412148 HAMPP81172 84 aa3.79□□□□□ -1.8
CCDC88A-203ENST00000412148 DEFB135Q30KP9 77 aa3.79□□□□□ -1.8
CCDC88A-203ENST00000412148 KLK12Q9UKR0 248 aa3.79□□□□□ -1.8
CCDC88A-203ENST00000412148 NOTCH3Q9UM47 2321 aa3.79□□□□□ -1.8
CCDC88A-203ENST00000412148 OCR1Q9BZK8 76 aa3.79□□□□□ -1.8
CCDC88A-203ENST00000412148 IGKV4-1P06312 121 aa3.78□□□□□ -1.8
CCDC88A-203ENST00000412148 C15orf56Q8N910 161 aa3.78□□□□□ -1.8
CCDC88A-203ENST00000412148 WNK1Q9H4A3 2382 aa3.78□□□□□ -1.8
CCDC88A-203ENST00000412148 NREPQ16612 68 aa3.78□□□□□ -1.8
CCDC88A-203ENST00000412148 ITPR3Q14573 2671 aa3.78□□□□□ -1.8
CCDC88A-203ENST00000412148 USP9YO00507 2555 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-203ENST00000412148 CHD8Q9HCK8 2581 aa3.78□□□□□ -1.8
CCDC88A-203ENST00000412148 CAMK2N2Q96S95 79 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 A0A0U1RQV1 116 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 BPY2O14599 106 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 PLA2G1BP04054 148 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 SPRR1AP35321 89 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 LINC01556Q5JQF7 62 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 TMEM254Q8TBM7 123 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 RETNQ9HD89 108 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 DHRS4-AS1Q9P1J3 65 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 ANK3Q12955 4377 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 APCP25054 2843 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 F8WEM9 126 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 KRTAP4-16G5E9R7 235 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 C4orf26Q17RF5 130 aa3.77□□□□□ -1.81
CCDC88A-203ENST00000412148 PDZD2O15018 2839 aa3.76□□□□□ -1.81
CCDC88A-203ENST00000412148 Q6ZRU5 148 aa3.76□□□□□ -1.81
CCDC88A-203ENST00000412148 SPRR4Q96PI1 79 aa3.76□□□□□ -1.81
CCDC88A-203ENST00000412148 TM2D3Q9BRN9 247 aa3.76□□□□□ -1.81
CCDC88A-203ENST00000412148 CSMD2Q7Z408 3487 aa3.76□□□□□ -1.81
CCDC88A-203ENST00000412148 XAGE1AQ9HD64 81 aa3.76□□□□□ -1.81
CCDC88A-203ENST00000412148 PIEZO1Q92508 2521 aa3.76□□□□□ -1.81
CCDC88A-203ENST00000412148 HIGD2BQ4VC39 106 aa3.75□□□□□ -1.81
CCDC88A-203ENST00000412148 RMI2Q96E14 147 aa3.75□□□□□ -1.81
CCDC88A-203ENST00000412148 MYO9AB2RTY4 2548 aa3.75□□□□□ -1.81
CCDC88A-203ENST00000412148 FP248Q71RG6 208 aaPredicted RBP3.75□□□□□ -1.81
CCDC88A-203ENST00000412148 PRO0628Q9UI54 55 aa3.75□□□□□ -1.81
CCDC88A-203ENST00000412148 NAV2Q8IVL1 2488 aa3.74□□□□□ -1.81
CCDC88A-203ENST00000412148 KPRPQ5T749 579 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-203ENST00000412148 Q6ZRX8 168 aa3.74□□□□□ -1.81
CCDC88A-203ENST00000412148 Q8N377 158 aa3.74□□□□□ -1.81
CCDC88A-203ENST00000412148 TLN2Q9Y4G6 2542 aa3.74□□□□□ -1.81
CCDC88A-203ENST00000412148 DNAH10OSP0CZ25 163 aa3.74□□□□□ -1.81
CCDC88A-203ENST00000412148 Q6ZRP5 223 aa3.74□□□□□ -1.81
CCDC88A-203ENST00000412148 DEFB4AO15263 64 aa3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 LORP23490 312 aaPredicted RBP3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 SYCNQ0VAF6 134 aa3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 HRCT1Q6UXD1 115 aa3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 WFDC10BQ8IUB3 73 aa3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 PRR26Q8N8Z3 221 aa3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 ZNF469Q96JG9 3925 aaPredicted RBP3.73□□□□□ -1.81
CCDC88A-203ENST00000412148 FUSP35637 526 aaKnown RBP eCLIP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms