RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LAMTOR3Q9UHA4 124 aa9.09□□□□□ -0.95
VPS54-203ENST00000409558 A0A087WVE0 104 aa9.09□□□□□ -0.95
VPS54-203ENST00000409558 CXCL5P42830 114 aa9.09□□□□□ -0.95
VPS54-203ENST00000409558 LYPD5Q6UWN5 251 aa9.09□□□□□ -0.95
VPS54-203ENST00000409558 ENHOQ6UWT2 76 aa9.08□□□□□ -0.96
VPS54-203ENST00000409558 CAMK2N2Q96S95 79 aa9.08□□□□□ -0.96
VPS54-203ENST00000409558 C22orf24Q9Y442 160 aa9.08□□□□□ -0.96
VPS54-203ENST00000409558 TENM2Q9NT68 2774 aa9.08□□□□□ -0.96
VPS54-203ENST00000409558 NHLRC4P0CG21 123 aaPredicted RBP9.07□□□□□ -0.96
VPS54-203ENST00000409558 KRTAP24-1Q3LI83 254 aa9.07□□□□□ -0.96
VPS54-203ENST00000409558 ORMDL1Q9P0S3 153 aa9.07□□□□□ -0.96
VPS54-203ENST00000409558 LELP1Q5T871 98 aa9.07□□□□□ -0.96
VPS54-203ENST00000409558 H0YGX0 51 aa9.05□□□□□ -0.96
VPS54-203ENST00000409558 TMEM126AQ9H061 195 aa9.05□□□□□ -0.96
VPS54-203ENST00000409558 LINC00846Q9NV44 126 aa9.05□□□□□ -0.96
VPS54-203ENST00000409558 INAFM2P0DMQ5 153 aa9.04□□□□□ -0.96
VPS54-203ENST00000409558 DEFB131BA0A096LNP1 70 aa9.04□□□□□ -0.96
VPS54-203ENST00000409558 ESRGQ1W209 222 aa9.04□□□□□ -0.96
VPS54-203ENST00000409558 TRBV10-3A0A0K0K1G6 114 aa9.03□□□□□ -0.96
VPS54-203ENST00000409558 M0QXV9 152 aa9.03□□□□□ -0.96
VPS54-203ENST00000409558 C6orf48Q9UBA6 75 aa9.02□□□□□ -0.96
VPS54-203ENST00000409558 ANK2Q01484 3957 aa9.02□□□□□ -0.97
VPS54-203ENST00000409558 DEFB105AQ8NG35 78 aa9.02□□□□□ -0.97
VPS54-203ENST00000409558 Q6ZQY7 126 aa9.01□□□□□ -0.97
VPS54-203ENST00000409558 C11orf45Q8TAV5 145 aa9.01□□□□□ -0.97
VPS54-203ENST00000409558 Q8N814 137 aa9.01□□□□□ -0.97
VPS54-203ENST00000409558 C1orf43Q9BWL3 253 aa9.01□□□□□ -0.97
VPS54-203ENST00000409558 Q6ZRU5 148 aa9□□□□□ -0.97
VPS54-203ENST00000409558 SCXQ7RTU7 201 aa8.99□□□□□ -0.97
VPS54-203ENST00000409558 LINC00643Q86TS7 51 aa8.98□□□□□ -0.97
VPS54-203ENST00000409558 HAMPP81172 84 aa8.97□□□□□ -0.97
VPS54-203ENST00000409558 M0R2N4 97 aa8.97□□□□□ -0.97
VPS54-203ENST00000409558 hADV29S1A0JD25 119 aa8.96□□□□□ -0.97
VPS54-203ENST00000409558 RPL37AP8A6NKH3 93 aa8.96□□□□□ -0.97
VPS54-203ENST00000409558 FAM240AA0A1B0GVK7 77 aa8.96□□□□□ -0.98
VPS54-203ENST00000409558 KLK5Q9Y337 293 aaPredicted RBP8.95□□□□□ -0.98
VPS54-203ENST00000409558 CASC10Q5T4H9 136 aa8.95□□□□□ -0.98
VPS54-203ENST00000409558 ACYP1P07311 99 aa8.94□□□□□ -0.98
VPS54-203ENST00000409558 TRAV23DV6A0A075B6W5 121 aa8.94□□□□□ -0.98
VPS54-203ENST00000409558 C9orf153Q5TBE3 101 aa8.93□□□□□ -0.98
VPS54-203ENST00000409558 FAM19A1Q7Z5A9 133 aa8.93□□□□□ -0.98
VPS54-203ENST00000409558 A0A1B0GX51 115 aa8.92□□□□□ -0.98
VPS54-203ENST00000409558 COX17Q14061 63 aa8.92□□□□□ -0.98
VPS54-203ENST00000409558 TMEM256-PLSCR3K7ERE1 68 aa8.92□□□□□ -0.98
VPS54-203ENST00000409558 DIRC1Q969H9 104 aa8.91□□□□□ -0.98
VPS54-203ENST00000409558 PRR34Q9NV39 138 aa8.91□□□□□ -0.98
VPS54-203ENST00000409558 LINC00575Q6W349 94 aa8.91□□□□□ -0.98
VPS54-203ENST00000409558 SMIM20Q8N5G0 67 aa8.91□□□□□ -0.98
VPS54-203ENST00000409558 RBM3P98179 157 aaKnown RBP8.91□□□□□ -0.98
VPS54-203ENST00000409558 ZNF73O43830 326 aaPredicted RBP8.9□□□□□ -0.98
VPS54-203ENST00000409558 Q6ZRP5 223 aa8.9□□□□□ -0.98
VPS54-203ENST00000409558 FAM168BA1KXE4 195 aa8.9□□□□□ -0.99
VPS54-203ENST00000409558 C3orf22Q8N5N4 141 aa8.89□□□□□ -0.99
VPS54-203ENST00000409558 IGKV2-24A0A0C4DH68 120 aa8.89□□□□□ -0.99
VPS54-203ENST00000409558 C15orf56Q8N910 161 aa8.89□□□□□ -0.99
VPS54-203ENST00000409558 NKAPP1Q8N9T2 125 aa8.89□□□□□ -0.99
VPS54-203ENST00000409558 NDUFC2O95298 119 aa8.88□□□□□ -0.99
VPS54-203ENST00000409558 DSCR8Q96T75 97 aa8.88□□□□□ -0.99
VPS54-203ENST00000409558 TRBV7-7A0A0K0K1E9 115 aa8.88□□□□□ -0.99
VPS54-203ENST00000409558 LINC01600Q96MT4 127 aa8.88□□□□□ -0.99
VPS54-203ENST00000409558 COX7BP24311 80 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 SYCNQ0VAF6 134 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 Q6Q795 121 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.87□□□□□ -0.99
VPS54-203ENST00000409558 CCKP06307 115 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.87□□□□□ -0.99
VPS54-203ENST00000409558 FAM19A5Q7Z5A7 132 aaPredicted RBP8.87□□□□□ -0.99
VPS54-203ENST00000409558 LINC01561Q8N1V8 128 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 UBL5Q9BZL1 73 aa8.86□□□□□ -0.99
VPS54-203ENST00000409558 JMJD7-PLA2G4BH0Y9G9 81 aa8.85□□□□□ -0.99
VPS54-203ENST00000409558 C3orf84H3BNL1 204 aa8.85□□□□□ -0.99
VPS54-203ENST00000409558 SERTAD4-AS1Q5TG53 156 aa8.85□□□□□ -0.99
VPS54-203ENST00000409558 Q8N9L7 120 aa8.84□□□□□ -0.99
VPS54-203ENST00000409558 LINC00588Q9Y4M8 146 aa8.84□□□□□ -1
VPS54-203ENST00000409558 SRRM2Q9UQ35 2752 aaKnown RBP8.83□□□□□ -1
VPS54-203ENST00000409558 USP17L23D6RBM5 183 aa8.83□□□□□ -1
VPS54-203ENST00000409558 NDUFC2-KCTD14E9PQ53 114 aa8.83□□□□□ -1
VPS54-203ENST00000409558 IGLV6-57P01721 117 aa8.83□□□□□ -1
VPS54-203ENST00000409558 VPREB1P12018 145 aa8.82□□□□□ -1
VPS54-203ENST00000409558 UPK3BQ9BT76 320 aa8.81□□□□□ -1
VPS54-203ENST00000409558 A0A0G2JQZ4 141 aa8.81□□□□□ -1
VPS54-203ENST00000409558 A0A1W2PNN7 141 aa8.81□□□□□ -1
VPS54-203ENST00000409558 CYSTM1Q9H1C7 97 aa8.81□□□□□ -1
VPS54-203ENST00000409558 EGFEM1PQ0D2K5 195 aa8.8□□□□□ -1
VPS54-203ENST00000409558 PSCAO43653 123 aa8.8□□□□□ -1
VPS54-203ENST00000409558 GHRHP01286 108 aa8.79□□□□□ -1
VPS54-203ENST00000409558 DPH3Q96FX2 82 aa8.79□□□□□ -1
VPS54-203ENST00000409558 UBE2DNLQ8IWF7 75 aa8.79□□□□□ -1
VPS54-203ENST00000409558 M0R378 163 aa8.78□□□□□ -1
VPS54-203ENST00000409558 FUSP35637 526 aaKnown RBP eCLIP8.78□□□□□ -1
VPS54-203ENST00000409558 K7EIL1 84 aa8.78□□□□□ -1
VPS54-203ENST00000409558 KRTAP26-1Q6PEX3 210 aa8.78□□□□□ -1
VPS54-203ENST00000409558 C7orf33Q8WU49 177 aa8.78□□□□□ -1
VPS54-203ENST00000409558 COL7A1Q02388 2944 aa8.78□□□□□ -1
VPS54-203ENST00000409558 IMUPQ9GZP8 106 aa8.78□□□□□ -1
VPS54-203ENST00000409558 UBE2BP63146 152 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 LINC01556Q5JQF7 62 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 ST20-AS1Q8NBB2 130 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 LYSTQ99698 3801 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 Q6JHZ5 121 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms