RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CRPP02741 224 aa8.94□□□□□ -0.98
LIMS1-204ENST00000409441 CFAP161Q6P656 301 aa8.94□□□□□ -0.98
LIMS1-204ENST00000409441 ANKRD29Q8N6D5 301 aa8.94□□□□□ -0.98
LIMS1-204ENST00000409441 Q9HAA7 133 aa8.94□□□□□ -0.98
LIMS1-204ENST00000409441 H3BT86 120 aa8.94□□□□□ -0.98
LIMS1-204ENST00000409441 MALP21145 153 aa8.94□□□□□ -0.98
LIMS1-204ENST00000409441 CKS1BP61024 79 aa8.94□□□□□ -0.98
LIMS1-204ENST00000409441 COX17Q14061 63 aa8.94□□□□□ -0.98
LIMS1-204ENST00000409441 KIAA0087Q14695 138 aa8.94□□□□□ -0.98
LIMS1-204ENST00000409441 C1orf134Q5TEV5 83 aa8.93□□□□□ -0.98
LIMS1-204ENST00000409441 C6orf223Q8N319 242 aa8.93□□□□□ -0.98
LIMS1-204ENST00000409441 PFN2P35080 140 aa8.92□□□□□ -0.98
LIMS1-204ENST00000409441 CLEC2BQ92478 149 aa8.92□□□□□ -0.98
LIMS1-204ENST00000409441 KMT2AQ03164 3969 aa8.92□□□□□ -0.98
LIMS1-204ENST00000409441 KMT2CQ8NEZ4 4911 aaKnown RBP8.92□□□□□ -0.98
LIMS1-204ENST00000409441 RPL28P46779 137 aaKnown RBP8.91□□□□□ -0.98
LIMS1-204ENST00000409441 CARD19Q96LW7 228 aa8.91□□□□□ -0.98
LIMS1-204ENST00000409441 IGLV10-54A0A075B6I4 117 aa8.91□□□□□ -0.98
LIMS1-204ENST00000409441 IGKV2-28A0A075B6P5 120 aa8.91□□□□□ -0.98
LIMS1-204ENST00000409441 TRAV8-4A0A0B4J246 113 aa8.91□□□□□ -0.98
LIMS1-204ENST00000409441 IGKV2D-28P01615 120 aa8.91□□□□□ -0.98
LIMS1-204ENST00000409441 IGKV2D-24A0A075B6R9 120 aa8.9□□□□□ -0.99
LIMS1-204ENST00000409441 GAGE12HA6NDE8 117 aa8.9□□□□□ -0.99
LIMS1-204ENST00000409441 LINC00337Q8N6G1 96 aa8.9□□□□□ -0.99
LIMS1-204ENST00000409441 RMI2Q96E14 147 aa8.9□□□□□ -0.99
LIMS1-204ENST00000409441 C1orf43Q9BWL3 253 aa8.9□□□□□ -0.99
LIMS1-204ENST00000409441 SACSQ9NZJ4 4579 aa8.9□□□□□ -0.99
LIMS1-204ENST00000409441 HYDINQ4G0P3 5121 aa8.89□□□□□ -0.99
LIMS1-204ENST00000409441 C2orf82Q6UX34 121 aa8.89□□□□□ -0.99
LIMS1-204ENST00000409441 TRACP01848 142 aa8.88□□□□□ -0.99
LIMS1-204ENST00000409441 Q6ZRN7 208 aaPredicted RBP8.88□□□□□ -0.99
LIMS1-204ENST00000409441 NDUFC2O95298 119 aa8.87□□□□□ -0.99
LIMS1-204ENST00000409441 RTL8CO15255 209 aa8.87□□□□□ -0.99
LIMS1-204ENST00000409441 PSCAO43653 123 aa8.87□□□□□ -0.99
LIMS1-204ENST00000409441 PCP4P48539 62 aa8.87□□□□□ -0.99
LIMS1-204ENST00000409441 SPAG11BQ08648 103 aa8.87□□□□□ -0.99
LIMS1-204ENST00000409441 XP32Q5T750 250 aa8.87□□□□□ -0.99
LIMS1-204ENST00000409441 KRTAP26-1Q6PEX3 210 aa8.87□□□□□ -0.99
LIMS1-204ENST00000409441 NTN5Q8WTR8 489 aaPredicted RBP8.87□□□□□ -0.99
LIMS1-204ENST00000409441 DNAH6Q9C0G6 4158 aa8.86□□□□□ -0.99
LIMS1-204ENST00000409441 H0YGX0 51 aa8.85□□□□□ -0.99
LIMS1-204ENST00000409441 SIGMAR1Q99720 223 aa8.85□□□□□ -0.99
LIMS1-204ENST00000409441 SMIM11BQ8TCY0 68 aa8.84□□□□□ -0.99
LIMS1-204ENST00000409441 RYR2Q92736 4967 aa8.84□□□□□ -0.99
LIMS1-204ENST00000409441 GVQW2A0A096LPI5 108 aaPredicted RBP8.83□□□□□ -1
LIMS1-204ENST00000409441 TNP2Q05952 138 aa8.81□□□□□ -1
LIMS1-204ENST00000409441 OR13C6PQ8NH95 151 aa8.81□□□□□ -1
LIMS1-204ENST00000409441 CDIP1Q9H305 208 aa8.81□□□□□ -1
LIMS1-204ENST00000409441 TEX49A0A1B0GTD5 131 aa8.8□□□□□ -1
LIMS1-204ENST00000409441 LRCOL1A6NCL2 159 aa8.8□□□□□ -1
LIMS1-204ENST00000409441 SCGB1A1P11684 91 aa8.8□□□□□ -1
LIMS1-204ENST00000409441 UNQ6190/PRO20217Q6UXQ8 127 aa8.8□□□□□ -1
LIMS1-204ENST00000409441 FAM218AQ96MZ4 157 aa8.8□□□□□ -1
LIMS1-204ENST00000409441 LECT2O14960 151 aa8.8□□□□□ -1
LIMS1-204ENST00000409441 LINC00336Q6ZUF6 198 aa8.8□□□□□ -1
LIMS1-204ENST00000409441 DNAH2Q9P225 4427 aa8.79□□□□□ -1
LIMS1-204ENST00000409441 A0A087WTM6 91 aa8.79□□□□□ -1
LIMS1-204ENST00000409441 C9orf116Q5BN46 136 aaPredicted RBP8.79□□□□□ -1
LIMS1-204ENST00000409441 C10orf25Q5T742 122 aa8.79□□□□□ -1
LIMS1-204ENST00000409441 TMEM126AQ9H061 195 aa8.79□□□□□ -1
LIMS1-204ENST00000409441 USP17L23D6RBM5 183 aa8.78□□□□□ -1
LIMS1-204ENST00000409441 F8WDY8 70 aa8.78□□□□□ -1
LIMS1-204ENST00000409441 BAALC-AS2P0C853 105 aa8.78□□□□□ -1
LIMS1-204ENST00000409441 A0A1B0GX51 115 aa8.77□□□□□ -1.01
LIMS1-204ENST00000409441 DNAL4O96015 105 aa8.77□□□□□ -1.01
LIMS1-204ENST00000409441 RYR3Q15413 4870 aa8.77□□□□□ -1.01
LIMS1-204ENST00000409441 ZNF561-AS1K7EIQ3 104 aa8.76□□□□□ -1.01
LIMS1-204ENST00000409441 C2orf48Q96LS8 159 aa8.76□□□□□ -1.01
LIMS1-204ENST00000409441 FAM240AA0A1B0GVK7 77 aa8.76□□□□□ -1.01
LIMS1-204ENST00000409441 C6orf48Q9UBA6 75 aa8.76□□□□□ -1.01
LIMS1-204ENST00000409441 DNAH10Q8IVF4 4471 aa8.75□□□□□ -1.01
LIMS1-204ENST00000409441 A0A087WYN8 130 aa8.75□□□□□ -1.01
LIMS1-204ENST00000409441 LINC00528Q8N1L1 170 aa8.75□□□□□ -1.01
LIMS1-204ENST00000409441 C15orf56Q8N910 161 aa8.75□□□□□ -1.01
LIMS1-204ENST00000409441 C14orf177Q52M58 125 aa8.74□□□□□ -1.01
LIMS1-204ENST00000409441 Q8N814 137 aa8.74□□□□□ -1.01
LIMS1-204ENST00000409441 LINC00526Q96FQ7 95 aa8.74□□□□□ -1.01
LIMS1-204ENST00000409441 PRR3P79522 188 aaKnown RBP8.73□□□□□ -1.01
LIMS1-204ENST00000409441 HIGD2BQ4VC39 106 aa8.73□□□□□ -1.01
LIMS1-204ENST00000409441 CAMK2N2Q96S95 79 aa8.73□□□□□ -1.01
LIMS1-204ENST00000409441 INAFM2P0DMQ5 153 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 C21orf62-AS1Q17RA5 79 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 S100A7L2Q5SY68 101 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 LINC00167Q96N53 147 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 KRTAP4-8Q9BYQ9 185 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 C22orf24Q9Y442 160 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 DNAH17Q9UFH2 4485 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 NCR3O14931 201 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 ACYP1P07311 99 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 XGP55808 180 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 Q8NDZ9 215 aa8.72□□□□□ -1.01
LIMS1-204ENST00000409441 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.71□□□□□ -1.02
LIMS1-204ENST00000409441 FRAS1Q86XX4 4008 aa8.7□□□□□ -1.02
LIMS1-204ENST00000409441 SNCGO76070 127 aa8.7□□□□□ -1.02
LIMS1-204ENST00000409441 IGLV6-57P01721 117 aa8.7□□□□□ -1.02
LIMS1-204ENST00000409441 A0A1B0GVY2 172 aa8.69□□□□□ -1.02
LIMS1-204ENST00000409441 MT-ATP8P03928 68 aa8.69□□□□□ -1.02
LIMS1-204ENST00000409441 SLPIP03973 132 aa8.69□□□□□ -1.02
LIMS1-204ENST00000409441 FUSP35637 526 aaKnown RBP eCLIP8.69□□□□□ -1.02
LIMS1-204ENST00000409441 KRTAP10-2P60368 255 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms